Wall clock time and date at job start Mon Mar 30 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47465 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47518 * 179.97438 * 12 11 10 14 14 C 1.46698 * 110.99999 * 294.54062 * 13 12 11 15 15 C 1.51371 * 109.31215 * 169.43223 * 14 13 12 16 16 C 1.51659 * 110.69998 * 58.72140 * 15 14 13 17 17 C 1.49856 * 114.93126 * 315.77088 * 16 15 14 18 18 H 1.09011 * 107.12430 * 156.15775 * 17 16 15 19 19 C 1.52367 * 113.89078 * 275.11101 * 17 16 15 20 20 O 1.21278 * 125.23551 * 326.70245 * 19 17 16 21 21 N 1.34866 * 109.36158 * 146.70001 * 19 17 16 22 22 C 1.46981 * 111.13799 * 359.31706 * 21 19 17 23 23 C 1.46662 * 111.00573 * 170.00057 * 13 12 11 24 24 H 1.09008 * 111.95478 * 53.77024 * 23 13 12 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 27 27 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 28 28 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 29 29 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 30 30 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 31 31 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 32 32 H 1.08997 * 109.47279 * 300.00209 * 12 11 10 33 33 H 1.09004 * 109.47330 * 59.99722 * 12 11 10 34 34 H 1.08999 * 109.61919 * 288.59483 * 14 13 12 35 35 H 1.09004 * 109.61846 * 49.13524 * 14 13 12 36 36 H 1.09000 * 108.96641 * 298.55083 * 15 14 13 37 37 H 1.08998 * 109.39994 * 179.17098 * 15 14 13 38 38 H 1.09002 * 108.39212 * 194.36140 * 16 15 14 39 39 H 1.08993 * 108.25704 * 77.08827 * 16 15 14 40 40 H 0.97005 * 124.43060 * 179.29603 * 21 19 17 41 41 H 1.08994 * 110.35625 * 222.95249 * 22 21 19 42 42 H 1.09004 * 110.43691 * 100.71625 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 6 6.0615 -4.0791 -0.0022 13 7 7.5305 -4.0792 -0.0029 14 6 8.0557 -3.5099 -1.2487 15 6 9.5462 -3.2867 -1.1078 16 6 10.2561 -4.5896 -0.7941 17 6 9.5871 -5.4397 0.2429 18 1 9.9119 -6.4666 0.0744 19 6 9.9520 -5.0679 1.6748 20 8 11.0292 -4.6421 2.0342 21 7 8.8908 -5.2864 2.4778 22 6 7.7415 -5.7896 1.7121 23 6 8.0562 -5.4277 0.2341 24 1 7.6441 -6.1546 -0.4658 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6797 -0.8895 27 1 3.8746 -0.6808 0.8905 28 1 3.6579 -3.1514 0.8880 29 1 3.6585 -3.1495 -0.8920 30 1 5.9148 -2.1220 -0.8910 31 1 5.9149 -2.1236 0.8890 32 1 5.6982 -4.5934 0.8875 33 1 5.6981 -4.5925 -0.8924 34 1 7.8808 -4.2042 -2.0706 35 1 7.5596 -2.5616 -1.4554 36 1 9.7233 -2.5772 -0.2995 37 1 9.9405 -2.8774 -2.0380 38 1 11.2643 -4.3579 -0.4507 39 1 10.3325 -5.1672 -1.7153 40 1 8.8866 -5.1320 3.4354 41 1 6.8249 -5.2968 2.0361 42 1 7.6512 -6.8698 1.8269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395371658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:38 Heat of formation + Delta-G solvation = -70.986478 kcal Electronic energy + Delta-G solvation = -20617.919338 eV Core-core repulsion = 17595.856115 eV Total energy + Delta-G solvation = -3022.063222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90528 -39.12540 -36.94575 -36.39240 -35.06747 -33.69357 -31.67910 -30.49208 -27.78931 -26.85275 -25.15716 -23.13516 -22.83932 -21.63301 -21.41903 -19.66564 -18.84443 -18.22401 -17.56100 -16.68014 -16.55484 -16.25243 -16.09211 -15.71524 -15.12447 -14.83172 -14.67966 -14.43471 -14.11469 -13.98527 -13.64767 -13.48053 -13.29395 -13.17838 -12.86013 -12.72194 -12.32467 -12.13417 -11.77523 -11.73087 -11.56983 -11.41997 -11.31797 -11.16269 -11.00557 -10.75486 -10.75304 -10.01312 -9.21906 -8.28977 -6.32289 1.36004 1.37211 1.49484 1.61699 2.36524 2.49685 2.83615 3.06778 3.32245 3.36376 3.75754 4.01037 4.09267 4.17414 4.25606 4.31000 4.46096 4.52997 4.58462 4.64611 4.67646 4.70173 4.78159 4.82053 4.88203 4.92191 5.04267 5.12377 5.19068 5.22048 5.29302 5.34655 5.38187 5.62386 5.68304 5.70976 5.89347 6.05338 6.15446 6.21495 6.31167 6.76403 7.30371 7.32675 8.87886 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030908 B = 0.003664 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.690724 B = 7639.159566 C = 7842.158496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.248 1.248 6 H -0.284 1.284 7 C -0.532 4.532 8 H 0.033 0.967 9 C -0.014 4.014 10 C -0.093 4.093 11 C -0.106 4.106 12 C 0.062 3.938 13 N -0.545 5.545 14 C 0.052 3.948 15 C -0.112 4.112 16 C -0.101 4.101 17 C -0.107 4.107 18 H 0.125 0.875 19 C 0.520 3.480 20 O -0.587 6.587 21 N -0.721 5.721 22 C 0.104 3.896 23 C 0.075 3.925 24 H 0.103 0.897 25 H 0.266 0.734 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.412 0.588 41 H 0.091 0.909 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.344 -14.297 -1.477 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.171 1.171 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.052 0.948 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.144 4.144 12 C -0.065 4.065 13 N -0.270 5.270 14 C -0.075 4.075 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.129 4.129 18 H 0.142 0.858 19 C 0.307 3.693 20 O -0.468 6.468 21 N -0.374 5.374 22 C -0.020 4.020 23 C -0.033 4.033 24 H 0.121 0.879 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.251 0.749 41 H 0.109 0.891 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.902 -13.726 -1.029 25.027 hybrid contribution -0.616 0.612 0.039 0.869 sum 20.285 -13.114 -0.990 24.176 Atomic orbital electron populations 1.70072 1.08267 1.28086 1.52945 1.26028 0.95598 1.03510 0.94256 0.85664 0.79480 0.78398 0.79133 1.19333 1.17147 1.20952 1.21580 0.92395 0.93054 1.49959 0.94847 1.19552 0.93614 0.95843 0.96109 1.21276 0.94551 0.96523 1.00731 1.21529 0.94173 0.96915 1.01747 1.22095 0.85968 0.96624 1.01794 1.61913 1.07833 1.20948 1.36350 1.21787 0.95406 1.00181 0.90163 1.20965 0.94727 0.97420 1.01885 1.20345 0.99097 0.96217 0.98194 1.21182 0.95960 1.03427 0.92285 0.85771 1.21583 0.82831 0.74978 0.89883 1.90685 1.26426 1.48417 1.81247 1.46261 1.13547 1.66452 1.11157 1.22700 0.89029 1.00452 0.89844 1.22637 0.92891 0.90815 0.96990 0.87941 0.92559 0.96593 0.96849 0.93091 0.93205 0.92353 0.92549 0.89456 0.93822 0.93331 0.90782 0.93999 0.89652 0.92240 0.89174 0.74880 0.89060 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 2 C 0.00 0.15 5.47 84.66 0.46 0.61 16 3 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 10 C -0.09 -3.38 5.15 30.59 0.16 -3.22 16 11 C -0.11 -2.97 5.15 30.59 0.16 -2.81 16 12 C 0.06 1.28 4.78 86.30 0.41 1.69 16 13 N -0.55 -10.32 4.31 -870.37 -3.75 -14.06 16 14 C 0.05 0.96 5.29 85.81 0.45 1.41 16 15 C -0.11 -2.02 6.08 29.62 0.18 -1.84 16 16 C -0.10 -1.63 5.40 29.14 0.16 -1.47 16 17 C -0.11 -1.68 2.66 -11.98 -0.03 -1.71 16 18 H 0.12 1.35 8.13 -2.38 -0.02 1.33 16 19 C 0.52 11.88 8.13 88.18 0.72 12.60 16 20 O -0.59 -18.82 17.46 -3.02 -0.05 -18.88 16 21 N -0.72 -12.47 6.28 -455.91 -2.86 -15.34 16 22 C 0.10 1.26 7.19 87.11 0.63 1.89 16 23 C 0.08 1.03 2.96 45.81 0.14 1.16 16 24 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.02 0.73 7.20 -2.38 -0.02 0.71 16 27 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 28 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.63 6.33 -2.38 -0.02 1.62 16 31 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.09 1.62 6.07 -2.39 -0.01 1.60 16 33 H 0.04 0.85 8.13 -2.38 -0.02 0.83 16 34 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 35 H 0.07 1.55 6.04 -2.39 -0.01 1.53 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.18 7.58 -2.39 -0.02 1.17 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.41 6.44 8.96 -92.70 -0.83 5.61 16 41 H 0.09 1.19 6.02 -2.39 -0.01 1.17 16 42 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -73.83 323.76 -0.57 -74.40 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.11 Total: 9.82 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 3.80 Total: -22.76 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -6.31 Total: -89.28 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -73.83 -0.57 -74.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395371658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.414 kcal (2) G-P(sol) polarization free energy of solvation -73.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds