Wall clock time and date at job start Mon Mar 30 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99562 * 2 1 4 4 H 1.48501 * 109.47234 * 270.00009 * 3 2 1 5 5 H 1.48502 * 109.47212 * 30.00023 * 3 2 1 6 6 H 1.48501 * 109.46948 * 149.99898 * 3 2 1 7 7 C 1.37871 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.53121 * 109.52424 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27695 * 182.43973 * 10 9 7 12 12 N 1.46844 * 109.52282 * 59.18155 * 11 10 9 13 13 C 1.46900 * 110.99960 * 174.15707 * 12 11 10 14 14 H 1.08997 * 109.79150 * 55.68862 * 13 12 11 15 15 C 1.53056 * 109.63405 * 295.18955 * 13 12 11 16 16 C 1.51797 * 110.74761 * 325.21897 * 15 13 12 17 17 C 1.51771 * 113.81350 * 293.18477 * 16 15 13 18 18 C 1.52987 * 110.87964 * 66.99442 * 17 16 15 19 19 N 1.47198 * 108.66769 * 273.54305 * 18 17 16 20 20 C 1.33369 * 120.43397 * 71.97012 * 19 18 17 21 21 O 1.21278 * 119.89255 * 179.69939 * 20 19 18 22 22 C 1.46844 * 111.20190 * 298.25645 * 12 11 10 23 23 C 1.53039 * 109.52204 * 61.74043 * 22 12 11 24 24 H 0.97000 * 120.00744 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.57504 * 300.15777 * 9 7 2 26 26 H 1.09004 * 109.49873 * 62.50000 * 10 9 7 27 27 H 1.09001 * 109.50283 * 302.38399 * 10 9 7 28 28 H 1.08995 * 109.46250 * 299.16346 * 11 10 9 29 29 H 1.09000 * 109.45932 * 179.19890 * 11 10 9 30 30 H 1.09005 * 109.22373 * 204.89510 * 15 13 12 31 31 H 1.08998 * 109.22461 * 85.54619 * 15 13 12 32 32 H 1.09006 * 108.61329 * 172.06349 * 16 15 13 33 33 H 1.08999 * 108.50258 * 54.22596 * 16 15 13 34 34 H 1.09004 * 109.19869 * 306.63671 * 17 16 15 35 35 H 1.09006 * 109.19623 * 187.35542 * 17 16 15 36 36 H 1.08997 * 109.60679 * 153.78366 * 18 17 16 37 37 H 1.09007 * 109.73905 * 33.37576 * 18 17 16 38 38 H 0.96998 * 119.78214 * 251.69369 * 19 18 17 39 39 H 1.08992 * 109.46586 * 181.75662 * 22 12 11 40 40 H 1.09000 * 109.46274 * 301.73027 * 22 12 11 41 41 H 1.09009 * 109.50309 * 180.88169 * 23 22 12 42 42 H 1.08997 * 109.53737 * 60.78712 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0005 11 6 1.4753 -4.9851 -0.0610 12 7 0.6546 -5.0186 -1.2782 13 6 0.0084 -6.3278 -1.4415 14 1 -0.5734 -6.5658 -0.5511 15 6 1.0746 -7.4035 -1.6620 16 6 2.2402 -6.8496 -2.4613 17 6 1.8856 -6.4892 -3.8923 18 6 0.9168 -5.3058 -3.9325 19 7 -0.4580 -5.8182 -3.8137 20 6 -0.9018 -6.2985 -2.6513 21 8 -2.0381 -6.7131 -2.5630 22 6 -0.3392 -3.9376 -1.2785 23 6 0.3764 -2.5850 -1.2533 24 1 -0.4851 0.8400 0.0004 25 1 0.6214 -2.5573 0.8883 26 1 2.8423 -3.6326 0.9120 27 1 2.9000 -3.5834 -0.8671 28 1 0.8311 -5.0711 0.8140 29 1 2.1807 -5.8160 -0.0755 30 1 0.6335 -8.2403 -2.2038 31 1 1.4365 -7.7536 -0.6954 32 1 3.0363 -7.5940 -2.4770 33 1 2.6105 -5.9560 -1.9589 34 1 1.4207 -7.3494 -4.3740 35 1 2.7956 -6.2258 -4.4316 36 1 1.0284 -4.7736 -4.8772 37 1 1.1277 -4.6290 -3.1044 38 1 -1.0463 -5.8028 -4.5847 39 1 -0.9518 -4.0076 -2.1773 40 1 -0.9750 -4.0284 -0.3978 41 1 -0.3617 -1.7830 -1.2378 42 1 1.0017 -2.4869 -2.1407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397190328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:21 Heat of formation + Delta-G solvation = -36.794087 kcal Electronic energy + Delta-G solvation = -22165.696635 eV Core-core repulsion = 19145.116106 eV Total energy + Delta-G solvation = -3020.580529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63862 -37.87869 -36.21090 -34.25220 -33.05303 -31.53277 -30.03175 -29.23983 -26.44030 -24.82792 -23.93996 -21.98740 -21.74920 -20.40906 -19.20992 -18.64628 -17.06484 -16.79651 -16.17379 -15.25614 -14.90511 -14.50622 -14.44668 -14.02927 -13.72453 -13.42133 -13.07928 -12.89729 -12.77429 -12.33509 -12.17101 -12.00207 -11.54516 -11.43850 -10.98414 -10.92734 -10.73008 -10.60444 -10.50824 -10.43399 -10.24979 -10.04335 -9.60310 -9.45384 -9.00184 -8.91326 -8.72161 -8.32241 -7.81126 -5.99616 -4.05498 2.81404 3.29448 3.36901 3.39418 3.55858 4.21237 4.43118 4.60022 4.90413 5.03766 5.09375 5.30439 5.34570 5.43676 5.56723 5.71584 5.76754 5.81142 5.82598 6.00208 6.07913 6.11675 6.14460 6.17506 6.24500 6.40025 6.50381 6.57561 6.66795 6.78390 6.92782 6.99855 7.11878 7.31929 7.44347 7.50459 7.53297 7.76213 7.99265 8.11517 8.44323 8.45543 8.98473 9.59456 11.06403 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028091 B = 0.005716 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.522220 B = 4897.765062 C = 5081.486576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.105 4.105 11 C 0.053 3.947 12 N -0.516 5.516 13 C 0.061 3.939 14 H 0.070 0.930 15 C -0.104 4.104 16 C -0.118 4.118 17 C -0.127 4.127 18 C 0.082 3.918 19 N -0.713 5.713 20 C 0.533 3.467 21 O -0.566 6.566 22 C 0.046 3.954 23 C -0.101 4.101 24 H 0.259 0.741 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.136 0.864 38 H 0.393 0.607 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.093 0.907 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.910 -12.102 -6.245 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.074 4.074 12 N -0.242 5.242 13 C -0.050 4.050 14 H 0.088 0.912 15 C -0.142 4.142 16 C -0.155 4.155 17 C -0.166 4.166 18 C -0.041 4.041 19 N -0.363 5.363 20 C 0.318 3.682 21 O -0.444 6.444 22 C -0.081 4.081 23 C -0.139 4.139 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.228 0.772 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.111 0.889 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.616 -12.119 -6.409 14.178 hybrid contribution -0.363 0.762 0.288 0.892 sum 3.253 -11.357 -6.121 13.305 Atomic orbital electron populations 1.69870 1.05867 1.26374 1.50897 1.24967 0.94809 0.99013 0.95189 0.86648 0.79883 0.83725 0.78039 1.20756 1.21365 1.20000 1.21184 0.92850 0.90595 1.50291 0.92722 1.18691 0.92672 0.91793 0.93951 1.21681 0.98632 0.93467 1.00477 1.22260 0.96025 0.99720 0.89393 1.62328 1.23062 1.00770 1.38079 1.22091 0.94830 0.92646 0.95459 0.91221 1.21299 0.95715 0.96371 1.00862 1.21077 0.96812 1.02119 0.95515 1.21637 0.99461 0.98414 0.97059 1.22477 0.79372 0.97132 1.05125 1.45838 1.15828 1.62705 1.11911 1.20286 0.86909 0.75927 0.85030 1.90721 1.19651 1.48950 1.85094 1.22448 0.93254 0.93057 0.99328 1.21674 1.00164 0.92638 0.99428 0.93057 0.96089 0.92987 0.92361 0.95336 0.91580 0.92002 0.91172 0.93047 0.89285 0.92747 0.91256 0.91184 0.84675 0.77232 0.92409 0.95391 0.88852 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.86 11.37 55.43 0.63 -24.23 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.41 8.56 -34.44 -0.29 -13.70 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.05 1.11 2.16 -91.64 -0.20 0.91 16 10 C -0.10 -1.98 5.32 -26.65 -0.14 -2.12 16 11 C 0.05 0.85 4.54 -3.83 -0.02 0.83 16 12 N -0.52 -8.11 0.91 -227.62 -0.21 -8.31 16 13 C 0.06 0.91 2.23 -68.48 -0.15 0.76 16 14 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16 15 C -0.10 -1.24 4.73 -27.31 -0.13 -1.37 16 16 C -0.12 -1.29 5.01 -27.97 -0.14 -1.43 16 17 C -0.13 -1.33 5.74 -27.36 -0.16 -1.49 16 18 C 0.08 0.99 6.29 -3.67 -0.02 0.97 16 19 N -0.71 -9.50 4.84 -59.90 -0.29 -9.79 16 20 C 0.53 8.59 5.01 -11.25 -0.06 8.54 16 21 O -0.57 -11.16 17.92 5.56 0.10 -11.06 16 22 C 0.05 0.87 4.37 -3.83 -0.02 0.86 16 23 C -0.10 -2.23 5.09 -26.65 -0.14 -2.36 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.89 5.88 -51.93 -0.31 0.59 16 30 H 0.06 0.73 7.86 -51.93 -0.41 0.32 16 31 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.10 5.35 -51.93 -0.28 0.82 16 34 H 0.05 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.14 1.96 4.27 -51.93 -0.22 1.74 16 38 H 0.39 4.70 8.91 -40.82 -0.36 4.33 16 39 H 0.06 1.08 6.27 -51.93 -0.33 0.76 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 2.38 6.17 -51.92 -0.32 2.06 16 42 H 0.04 0.97 7.96 -51.93 -0.41 0.55 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -28.87 308.03 -8.50 -37.37 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.80 Total: 3.69 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.56 Total: -8.07 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.13 Total: -42.33 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.10 Total: -11.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.87 -8.50 -37.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397190328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.577 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds