Wall clock time and date at job start Mon Mar 30 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99562 * 2 1 4 4 H 1.48501 * 109.47234 * 270.00009 * 3 2 1 5 5 H 1.48502 * 109.47212 * 30.00023 * 3 2 1 6 6 H 1.48501 * 109.46948 * 149.99898 * 3 2 1 7 7 C 1.37871 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.53121 * 109.52424 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27695 * 182.43973 * 10 9 7 12 12 N 1.46844 * 109.52282 * 59.18155 * 11 10 9 13 13 C 1.46900 * 110.99960 * 174.15707 * 12 11 10 14 14 H 1.08997 * 109.79150 * 55.68862 * 13 12 11 15 15 C 1.53056 * 109.63405 * 295.18955 * 13 12 11 16 16 C 1.51797 * 110.74761 * 325.21897 * 15 13 12 17 17 C 1.51771 * 113.81350 * 293.18477 * 16 15 13 18 18 C 1.52987 * 110.87964 * 66.99442 * 17 16 15 19 19 N 1.47198 * 108.66769 * 273.54305 * 18 17 16 20 20 C 1.33369 * 120.43397 * 71.97012 * 19 18 17 21 21 O 1.21278 * 119.89255 * 179.69939 * 20 19 18 22 22 C 1.46844 * 111.20190 * 298.25645 * 12 11 10 23 23 C 1.53039 * 109.52204 * 61.74043 * 22 12 11 24 24 H 0.97000 * 120.00744 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.57504 * 300.15777 * 9 7 2 26 26 H 1.09004 * 109.49873 * 62.50000 * 10 9 7 27 27 H 1.09001 * 109.50283 * 302.38399 * 10 9 7 28 28 H 1.08995 * 109.46250 * 299.16346 * 11 10 9 29 29 H 1.09000 * 109.45932 * 179.19890 * 11 10 9 30 30 H 1.09005 * 109.22373 * 204.89510 * 15 13 12 31 31 H 1.08998 * 109.22461 * 85.54619 * 15 13 12 32 32 H 1.09006 * 108.61329 * 172.06349 * 16 15 13 33 33 H 1.08999 * 108.50258 * 54.22596 * 16 15 13 34 34 H 1.09004 * 109.19869 * 306.63671 * 17 16 15 35 35 H 1.09006 * 109.19623 * 187.35542 * 17 16 15 36 36 H 1.08997 * 109.60679 * 153.78366 * 18 17 16 37 37 H 1.09007 * 109.73905 * 33.37576 * 18 17 16 38 38 H 0.96998 * 119.78214 * 251.69369 * 19 18 17 39 39 H 1.08992 * 109.46586 * 181.75662 * 22 12 11 40 40 H 1.09000 * 109.46274 * 301.73027 * 22 12 11 41 41 H 1.09009 * 109.50309 * 180.88169 * 23 22 12 42 42 H 1.08997 * 109.53737 * 60.78712 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0005 11 6 1.4753 -4.9851 -0.0610 12 7 0.6546 -5.0186 -1.2782 13 6 0.0084 -6.3278 -1.4415 14 1 -0.5734 -6.5658 -0.5511 15 6 1.0746 -7.4035 -1.6620 16 6 2.2402 -6.8496 -2.4613 17 6 1.8856 -6.4892 -3.8923 18 6 0.9168 -5.3058 -3.9325 19 7 -0.4580 -5.8182 -3.8137 20 6 -0.9018 -6.2985 -2.6513 21 8 -2.0381 -6.7131 -2.5630 22 6 -0.3392 -3.9376 -1.2785 23 6 0.3764 -2.5850 -1.2533 24 1 -0.4851 0.8400 0.0004 25 1 0.6214 -2.5573 0.8883 26 1 2.8423 -3.6326 0.9120 27 1 2.9000 -3.5834 -0.8671 28 1 0.8311 -5.0711 0.8140 29 1 2.1807 -5.8160 -0.0755 30 1 0.6335 -8.2403 -2.2038 31 1 1.4365 -7.7536 -0.6954 32 1 3.0363 -7.5940 -2.4770 33 1 2.6105 -5.9560 -1.9589 34 1 1.4207 -7.3494 -4.3740 35 1 2.7956 -6.2258 -4.4316 36 1 1.0284 -4.7736 -4.8772 37 1 1.1277 -4.6290 -3.1044 38 1 -1.0463 -5.8028 -4.5847 39 1 -0.9518 -4.0076 -2.1773 40 1 -0.9750 -4.0284 -0.3978 41 1 -0.3617 -1.7830 -1.2378 42 1 1.0017 -2.4869 -2.1407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397190328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:21 Heat of formation + Delta-G solvation = -54.031766 kcal Electronic energy + Delta-G solvation = -22166.444117 eV Core-core repulsion = 19145.116106 eV Total energy + Delta-G solvation = -3021.328011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.87759 -39.33788 -37.45965 -35.71051 -34.44353 -33.12817 -31.49898 -30.64760 -27.89291 -26.35519 -25.07044 -23.57070 -23.30670 -21.45517 -20.37052 -20.26506 -18.47707 -18.26389 -17.71965 -16.67017 -16.36756 -15.98951 -15.72677 -15.35124 -14.91241 -14.71278 -14.52080 -14.38521 -14.18885 -13.77027 -13.62034 -13.29472 -12.98222 -12.78042 -12.70339 -12.48701 -12.32660 -12.03473 -11.84988 -11.75190 -11.41918 -11.38748 -11.33573 -10.88094 -10.72946 -10.60548 -10.34892 -10.00694 -9.16104 -8.04632 -6.17803 1.43427 1.45010 1.54138 1.54476 2.44518 2.46524 2.86524 3.23148 3.48268 3.90562 4.05811 4.10896 4.19486 4.27703 4.37441 4.45252 4.48752 4.57955 4.75625 4.78536 4.82701 4.89139 4.94099 5.00287 5.11855 5.22668 5.24737 5.30597 5.32302 5.34333 5.52375 5.58960 5.65625 5.74316 5.85972 5.97126 6.05437 6.13800 6.27318 6.33605 6.43614 6.95553 7.25610 7.50764 8.99680 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028091 B = 0.005716 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.522220 B = 4897.765062 C = 5081.486576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.043 3.957 10 C -0.095 4.095 11 C 0.059 3.941 12 N -0.498 5.498 13 C 0.062 3.938 14 H 0.057 0.943 15 C -0.099 4.099 16 C -0.117 4.117 17 C -0.123 4.123 18 C 0.079 3.921 19 N -0.701 5.701 20 C 0.527 3.473 21 O -0.609 6.609 22 C 0.062 3.938 23 C -0.087 4.087 24 H 0.258 0.742 25 H -0.019 1.019 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.017 0.983 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.400 0.600 39 H 0.059 0.941 40 H 0.004 0.996 41 H 0.055 0.945 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 -13.349 -7.306 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.024 3.976 10 C -0.132 4.132 11 C -0.068 4.068 12 N -0.224 5.224 13 C -0.050 4.050 14 H 0.075 0.925 15 C -0.137 4.137 16 C -0.155 4.155 17 C -0.161 4.161 18 C -0.044 4.044 19 N -0.350 5.350 20 C 0.313 3.687 21 O -0.491 6.491 22 C -0.066 4.066 23 C -0.125 4.125 24 H 0.067 0.933 25 H 0.000 1.000 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.236 0.764 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.966 -13.365 -7.494 16.443 hybrid contribution -1.084 1.164 0.606 1.702 sum 4.882 -12.201 -6.888 14.837 Atomic orbital electron populations 1.70033 1.07270 1.26874 1.51900 1.25733 0.95526 1.02344 0.95107 0.85677 0.78780 0.79727 0.78180 1.20105 1.21624 1.19148 1.21593 0.93149 0.91950 1.49676 0.92532 1.18679 0.93202 0.93032 0.92667 1.21519 0.97735 0.92949 1.01041 1.22239 0.96219 0.99425 0.88913 1.62346 1.21732 1.00475 1.37842 1.22145 0.95642 0.92655 0.94544 0.92507 1.21331 0.95017 0.95125 1.02238 1.21088 0.96775 1.02241 0.95351 1.21611 0.99725 0.97584 0.97199 1.22571 0.78751 0.97807 1.05299 1.45868 1.16649 1.61119 1.11365 1.20521 0.86439 0.75715 0.86016 1.90700 1.21394 1.51187 1.85867 1.22123 0.93251 0.92858 0.98323 1.21379 0.99070 0.93247 0.98844 0.93333 1.00043 0.92597 0.91519 0.96437 0.87713 0.91566 0.89435 0.90706 0.90347 0.92324 0.89255 0.89108 0.86894 0.76404 0.92241 0.97735 0.92682 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.03 11.37 21.44 0.24 -52.78 16 2 C 0.01 0.60 5.31 84.65 0.45 1.05 16 3 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.53 -27.84 8.56 25.60 0.22 -27.62 16 8 H 0.06 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.04 2.04 2.16 -11.46 -0.02 2.02 16 10 C -0.09 -3.47 5.32 30.65 0.16 -3.31 16 11 C 0.06 1.78 4.54 86.33 0.39 2.17 16 12 N -0.50 -15.13 0.91 -874.06 -0.79 -15.92 16 13 C 0.06 1.75 2.23 44.42 0.10 1.85 16 14 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 15 C -0.10 -2.04 4.73 30.22 0.14 -1.90 16 16 C -0.12 -2.10 5.01 29.79 0.15 -1.95 16 17 C -0.12 -2.11 5.74 30.19 0.17 -1.94 16 18 C 0.08 1.68 6.29 86.24 0.54 2.23 16 19 N -0.70 -17.64 4.84 -462.59 -2.24 -19.87 16 20 C 0.53 16.61 5.01 88.11 0.44 17.05 16 21 O -0.61 -24.18 17.92 -3.02 -0.05 -24.24 16 22 C 0.06 2.41 4.37 86.33 0.38 2.79 16 23 C -0.09 -3.95 5.09 30.65 0.16 -3.80 16 24 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 25 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 26 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.02 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.10 2.44 5.88 -2.39 -0.01 2.43 16 30 H 0.07 1.36 7.86 -2.38 -0.02 1.34 16 31 H 0.09 1.53 7.73 -2.39 -0.02 1.51 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.08 1.61 5.35 -2.39 -0.01 1.60 16 34 H 0.06 1.00 8.05 -2.38 -0.02 0.98 16 35 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 3.04 4.27 -2.38 -0.01 3.03 16 38 H 0.40 9.02 8.91 -92.71 -0.83 8.19 16 39 H 0.06 2.27 6.27 -2.39 -0.01 2.25 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.05 2.93 6.17 -2.38 -0.01 2.92 16 42 H 0.05 2.03 7.96 -2.39 -0.02 2.02 16 Total: -1.00 -64.40 308.03 2.65 -61.75 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.18 Total: 17.54 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 3.28 Total: -11.36 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -2.79 Total: -88.58 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.40 2.65 -61.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397190328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.721 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds