Wall clock time and date at job start Mon Mar 30 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46987 * 300.00065 * 3 2 1 6 6 H 1.48503 * 109.46798 * 59.99806 * 3 2 1 7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.90031 * 56.14163 * 9 7 2 11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2 12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7 13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9 14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11 15 15 C 1.50699 * 109.47353 * 69.15552 * 14 13 12 16 16 O 1.21286 * 119.99556 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00403 * 180.02562 * 15 14 13 18 18 C 1.46934 * 120.62699 * 359.72045 * 17 15 14 19 19 C 1.53622 * 108.53947 * 126.37241 * 18 17 15 20 20 C 1.53034 * 109.24431 * 54.85473 * 19 18 17 21 21 C 1.53041 * 109.54128 * 298.50803 * 20 19 18 22 22 C 1.46917 * 120.63463 * 180.02562 * 17 15 14 23 23 C 1.47846 * 108.56553 * 0.99350 * 13 12 11 24 24 H 0.97006 * 120.00009 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.69757 * 87.90335 * 11 9 7 26 26 H 1.09005 * 110.84788 * 324.75216 * 11 9 7 27 27 H 1.08999 * 109.88748 * 262.87827 * 12 11 9 28 28 H 1.09000 * 109.89149 * 141.68777 * 12 11 9 29 29 H 1.09001 * 109.47310 * 189.16067 * 14 13 12 30 30 H 1.09001 * 109.46761 * 309.15792 * 14 13 12 31 31 H 1.08999 * 109.58450 * 246.20617 * 18 17 15 32 32 H 1.09000 * 109.58750 * 6.62704 * 18 17 15 33 33 H 1.09002 * 109.63670 * 294.85925 * 19 18 17 34 34 H 1.09005 * 109.43244 * 174.72660 * 19 18 17 35 35 H 1.09005 * 109.46072 * 178.48730 * 20 19 18 36 36 H 1.09000 * 109.44770 * 58.52323 * 20 19 18 37 37 H 1.08995 * 109.49718 * 301.41634 * 21 20 19 38 38 H 1.08993 * 109.52438 * 181.33251 * 21 20 19 39 39 H 1.09004 * 109.58744 * 353.37013 * 22 17 15 40 40 H 1.09000 * 109.59149 * 113.65563 * 22 17 15 41 41 H 1.09002 * 110.37464 * 94.73346 * 23 13 12 42 42 H 1.08999 * 110.37318 * 216.96123 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5649 -2.5521 -0.8459 11 6 0.4976 -2.7105 1.3424 12 6 0.3927 -4.2467 1.4450 13 7 1.4574 -4.8148 0.5977 14 6 2.3331 -5.7009 1.3760 15 6 1.5740 -6.9438 1.7634 16 8 0.4173 -7.0783 1.4241 17 7 2.1802 -7.9057 2.4869 18 6 3.5826 -7.7598 2.9002 19 6 3.6660 -7.9527 4.4220 20 6 3.0378 -9.2973 4.7952 21 6 1.5621 -9.3030 4.3896 22 6 1.4534 -9.1232 2.8717 23 6 2.2260 -3.7029 -0.0012 24 1 -0.4850 0.8401 -0.0004 25 1 -0.4934 -2.2583 1.3035 26 1 1.0714 -2.3069 2.1767 27 1 -0.5822 -4.5766 1.0863 28 1 0.5352 -4.5599 2.4793 29 1 3.1988 -5.9768 0.7738 30 1 2.6664 -5.1836 2.2757 31 1 4.1913 -8.5129 2.3997 32 1 3.9396 -6.7643 2.6364 33 1 3.1279 -7.1481 4.9232 34 1 4.7109 -7.9406 4.7324 35 1 3.1191 -9.4499 5.8714 36 1 3.5607 -10.0992 4.2742 37 1 1.0438 -8.4857 4.8910 38 1 1.1091 -10.2518 4.6768 39 1 0.4049 -9.0275 2.5892 40 1 1.8906 -9.9847 2.3671 41 1 3.1047 -3.4798 0.6040 42 1 2.5214 -3.9515 -1.0205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397561212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:37 Heat of formation + Delta-G solvation = -37.956316 kcal Electronic energy + Delta-G solvation = -20818.769870 eV Core-core repulsion = 17798.138943 eV Total energy + Delta-G solvation = -3020.630927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16633 -38.05548 -36.89633 -33.24583 -32.90625 -31.49400 -30.50271 -28.17078 -26.84966 -25.07051 -23.99093 -23.16538 -21.12588 -19.94295 -19.65474 -18.79172 -17.00867 -16.51086 -15.74307 -15.61877 -14.78583 -14.71494 -14.62042 -14.27383 -14.12168 -13.80405 -13.29780 -13.16182 -12.56206 -12.42494 -12.21072 -12.08697 -11.77052 -11.50566 -11.22222 -11.05339 -10.94125 -10.92014 -10.80372 -10.76177 -10.46112 -10.19716 -9.62275 -9.48813 -9.21686 -8.82317 -8.65021 -8.38395 -7.57475 -6.01273 -4.04881 2.84903 2.95639 3.29478 3.37593 3.40765 4.38983 4.44851 4.54474 4.61479 4.69449 4.84618 4.92143 5.05364 5.23243 5.28621 5.32094 5.45129 5.51474 5.53986 5.59748 5.62167 5.70445 5.79290 5.82661 5.89062 6.06671 6.19566 6.27611 6.47396 6.49080 6.63744 6.84450 7.18441 7.19540 7.38441 7.64014 7.70545 7.74009 7.87352 8.03774 8.40634 8.43964 8.98031 9.59313 11.08775 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.003901 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.082689 B = 7175.146515 C = 7469.724506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.050 3.950 10 H 0.042 0.958 11 C -0.123 4.123 12 C 0.052 3.948 13 N -0.518 5.518 14 C 0.036 3.964 15 C 0.517 3.483 16 O -0.517 6.517 17 N -0.622 5.622 18 C 0.107 3.893 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.135 4.135 22 C 0.112 3.888 23 C 0.046 3.954 24 H 0.260 0.740 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.700 -17.574 9.305 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.031 3.969 10 H 0.061 0.939 11 C -0.162 4.162 12 C -0.075 4.075 13 N -0.242 5.242 14 C -0.095 4.095 15 C 0.305 3.695 16 O -0.390 6.390 17 N -0.359 5.359 18 C -0.016 4.016 19 C -0.175 4.175 20 C -0.156 4.156 21 C -0.173 4.173 22 C -0.011 4.011 23 C -0.080 4.080 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.672 -17.816 8.705 20.921 hybrid contribution 0.943 1.330 0.842 1.835 sum 7.615 -16.486 9.547 20.516 Atomic orbital electron populations 1.69982 1.05914 1.26426 1.50117 1.24981 0.94825 0.99056 0.94975 0.86565 0.80109 0.83909 0.77570 1.19797 1.20982 1.21105 1.21062 0.92754 0.90268 1.51228 0.92537 1.19781 0.92653 0.90793 0.93705 0.93935 1.22824 1.01996 0.91202 1.00164 1.22815 0.95293 0.96026 0.93400 1.63398 1.11068 1.18782 1.30987 1.22134 0.96347 0.92895 0.98162 1.20854 0.87457 0.84179 0.77044 1.90680 1.17051 1.78513 1.52804 1.48170 1.12758 1.19908 1.55074 1.21817 0.82197 1.02750 0.94856 1.22004 1.01406 0.98263 0.95823 1.21505 0.95759 0.97329 1.01055 1.21921 0.96923 1.02353 0.96111 1.21511 0.98800 0.86441 0.94302 1.23222 0.96446 0.90677 0.97672 0.93049 0.91156 0.93528 0.91310 0.95234 0.88726 0.92400 0.91383 0.89532 0.91350 0.90737 0.91804 0.91821 0.91521 0.90927 0.89051 0.91925 0.94608 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 12.63 55.43 0.70 -25.05 16 2 C 0.06 1.77 5.38 -17.82 -0.10 1.68 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.11 8.51 -34.44 -0.29 -14.40 16 8 H 0.06 1.51 7.77 -52.49 -0.41 1.11 16 9 C 0.05 1.27 2.85 -89.48 -0.26 1.02 16 10 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 11 C -0.12 -2.96 5.91 -24.75 -0.15 -3.11 16 12 C 0.05 1.12 5.61 -2.83 -0.02 1.10 16 13 N -0.52 -10.53 4.87 -232.68 -1.13 -11.67 16 14 C 0.04 0.58 3.37 -4.98 -0.02 0.57 16 15 C 0.52 8.37 7.32 -10.99 -0.08 8.28 16 16 O -0.52 -10.41 14.92 5.55 0.08 -10.33 16 17 N -0.62 -7.59 2.97 -172.48 -0.51 -8.10 16 18 C 0.11 0.95 6.37 -3.48 -0.02 0.93 16 19 C -0.14 -1.04 6.10 -26.39 -0.16 -1.20 16 20 C -0.12 -0.84 5.88 -26.69 -0.16 -1.00 16 21 C -0.13 -1.14 6.08 -26.59 -0.16 -1.30 16 22 C 0.11 1.20 6.43 -3.69 -0.02 1.17 16 23 C 0.05 1.00 6.12 -2.30 -0.01 0.98 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.07 1.82 7.85 -51.93 -0.41 1.42 16 26 H 0.05 1.13 8.04 -51.93 -0.42 0.71 16 27 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.03 0.59 7.30 -51.93 -0.38 0.21 16 29 H 0.09 1.31 7.87 -51.93 -0.41 0.90 16 30 H 0.06 0.87 7.54 -51.93 -0.39 0.48 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.75 5.93 -51.93 -0.31 0.44 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.16 7.01 -51.93 -0.36 0.80 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.73 7.68 -51.93 -0.40 0.33 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -31.54 327.03 -9.67 -41.20 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.27 Total: -1.89 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.44 Total: -5.29 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.94 Total: -44.81 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.54 -9.67 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397561212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.248 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds