Wall clock time and date at job start Mon Mar 30 2020 05:25:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86803 * 120.00206 * 2 1
4 4 H 1.48493 * 109.47036 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46987 * 300.00065 * 3 2 1
6 6 H 1.48503 * 109.46798 * 59.99806 * 3 2 1
7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1
9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1
10 10 H 1.08998 * 110.90031 * 56.14163 * 9 7 2
11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2
12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7
13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9
14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11
15 15 C 1.50699 * 109.47353 * 69.15552 * 14 13 12
16 16 O 1.21286 * 119.99556 * 0.02562 * 15 14 13
17 17 N 1.34771 * 120.00403 * 180.02562 * 15 14 13
18 18 C 1.46934 * 120.62699 * 359.72045 * 17 15 14
19 19 C 1.53622 * 108.53947 * 126.37241 * 18 17 15
20 20 C 1.53034 * 109.24431 * 54.85473 * 19 18 17
21 21 C 1.53041 * 109.54128 * 298.50803 * 20 19 18
22 22 C 1.46917 * 120.63463 * 180.02562 * 17 15 14
23 23 C 1.47846 * 108.56553 * 0.99350 * 13 12 11
24 24 H 0.97006 * 120.00009 * 0.02562 * 1 2 3
25 25 H 1.09004 * 110.69757 * 87.90335 * 11 9 7
26 26 H 1.09005 * 110.84788 * 324.75216 * 11 9 7
27 27 H 1.08999 * 109.88748 * 262.87827 * 12 11 9
28 28 H 1.09000 * 109.89149 * 141.68777 * 12 11 9
29 29 H 1.09001 * 109.47310 * 189.16067 * 14 13 12
30 30 H 1.09001 * 109.46761 * 309.15792 * 14 13 12
31 31 H 1.08999 * 109.58450 * 246.20617 * 18 17 15
32 32 H 1.09000 * 109.58750 * 6.62704 * 18 17 15
33 33 H 1.09002 * 109.63670 * 294.85925 * 19 18 17
34 34 H 1.09005 * 109.43244 * 174.72660 * 19 18 17
35 35 H 1.09005 * 109.46072 * 178.48730 * 20 19 18
36 36 H 1.09000 * 109.44770 * 58.52323 * 20 19 18
37 37 H 1.08995 * 109.49718 * 301.41634 * 21 20 19
38 38 H 1.08993 * 109.52438 * 181.33251 * 21 20 19
39 39 H 1.09004 * 109.58744 * 353.37013 * 22 17 15
40 40 H 1.09000 * 109.59149 * 113.65563 * 22 17 15
41 41 H 1.09002 * 110.37464 * 94.73346 * 23 13 12
42 42 H 1.08999 * 110.37318 * 216.96123 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 1 0.5649 -2.5521 -0.8459
11 6 0.4976 -2.7105 1.3424
12 6 0.3927 -4.2467 1.4450
13 7 1.4574 -4.8148 0.5977
14 6 2.3331 -5.7009 1.3760
15 6 1.5740 -6.9438 1.7634
16 8 0.4173 -7.0783 1.4241
17 7 2.1802 -7.9057 2.4869
18 6 3.5826 -7.7598 2.9002
19 6 3.6660 -7.9527 4.4220
20 6 3.0378 -9.2973 4.7952
21 6 1.5621 -9.3030 4.3896
22 6 1.4534 -9.1232 2.8717
23 6 2.2260 -3.7029 -0.0012
24 1 -0.4850 0.8401 -0.0004
25 1 -0.4934 -2.2583 1.3035
26 1 1.0714 -2.3069 2.1767
27 1 -0.5822 -4.5766 1.0863
28 1 0.5352 -4.5599 2.4793
29 1 3.1988 -5.9768 0.7738
30 1 2.6664 -5.1836 2.2757
31 1 4.1913 -8.5129 2.3997
32 1 3.9396 -6.7643 2.6364
33 1 3.1279 -7.1481 4.9232
34 1 4.7109 -7.9406 4.7324
35 1 3.1191 -9.4499 5.8714
36 1 3.5607 -10.0992 4.2742
37 1 1.0438 -8.4857 4.8910
38 1 1.1091 -10.2518 4.6768
39 1 0.4049 -9.0275 2.5892
40 1 1.8906 -9.9847 2.3671
41 1 3.1047 -3.4798 0.6040
42 1 2.5214 -3.9515 -1.0205
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397561212.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:25:37
Heat of formation + Delta-G solvation = -37.956316 kcal
Electronic energy + Delta-G solvation = -20818.769870 eV
Core-core repulsion = 17798.138943 eV
Total energy + Delta-G solvation = -3020.630927 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.16633 -38.05548 -36.89633 -33.24583 -32.90625 -31.49400 -30.50271 -28.17078
-26.84966 -25.07051 -23.99093 -23.16538 -21.12588 -19.94295 -19.65474 -18.79172
-17.00867 -16.51086 -15.74307 -15.61877 -14.78583 -14.71494 -14.62042 -14.27383
-14.12168 -13.80405 -13.29780 -13.16182 -12.56206 -12.42494 -12.21072 -12.08697
-11.77052 -11.50566 -11.22222 -11.05339 -10.94125 -10.92014 -10.80372 -10.76177
-10.46112 -10.19716 -9.62275 -9.48813 -9.21686 -8.82317 -8.65021 -8.38395
-7.57475 -6.01273 -4.04881 2.84903 2.95639 3.29478 3.37593 3.40765
4.38983 4.44851 4.54474 4.61479 4.69449 4.84618 4.92143 5.05364
5.23243 5.28621 5.32094 5.45129 5.51474 5.53986 5.59748 5.62167
5.70445 5.79290 5.82661 5.89062 6.06671 6.19566 6.27611 6.47396
6.49080 6.63744 6.84450 7.18441 7.19540 7.38441 7.64014 7.70545
7.74009 7.87352 8.03774 8.40634 8.43964 8.98031 9.59313 11.08775
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.037172 B = 0.003901 C = 0.003748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 753.082689 B = 7175.146515 C = 7469.724506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.064 3.936
3 Si 0.890 3.110
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.285 1.285
7 C -0.515 4.515
8 H 0.056 0.944
9 C 0.050 3.950
10 H 0.042 0.958
11 C -0.123 4.123
12 C 0.052 3.948
13 N -0.518 5.518
14 C 0.036 3.964
15 C 0.517 3.483
16 O -0.517 6.517
17 N -0.622 5.622
18 C 0.107 3.893
19 C -0.137 4.137
20 C -0.119 4.119
21 C -0.135 4.135
22 C 0.112 3.888
23 C 0.046 3.954
24 H 0.260 0.740
25 H 0.070 0.930
26 H 0.046 0.954
27 H 0.069 0.931
28 H 0.029 0.971
29 H 0.095 0.905
30 H 0.058 0.942
31 H 0.068 0.932
32 H 0.086 0.914
33 H 0.068 0.932
34 H 0.074 0.926
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.066 0.934
38 H 0.072 0.928
39 H 0.091 0.909
40 H 0.062 0.938
41 H 0.036 0.964
42 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.700 -17.574 9.305 21.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.524 5.524
2 C -0.138 4.138
3 Si 0.718 3.282
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.211 1.211
7 C -0.553 4.553
8 H 0.075 0.925
9 C 0.031 3.969
10 H 0.061 0.939
11 C -0.162 4.162
12 C -0.075 4.075
13 N -0.242 5.242
14 C -0.095 4.095
15 C 0.305 3.695
16 O -0.390 6.390
17 N -0.359 5.359
18 C -0.016 4.016
19 C -0.175 4.175
20 C -0.156 4.156
21 C -0.173 4.173
22 C -0.011 4.011
23 C -0.080 4.080
24 H 0.070 0.930
25 H 0.088 0.912
26 H 0.065 0.935
27 H 0.087 0.913
28 H 0.048 0.952
29 H 0.113 0.887
30 H 0.076 0.924
31 H 0.086 0.914
32 H 0.105 0.895
33 H 0.086 0.914
34 H 0.093 0.907
35 H 0.082 0.918
36 H 0.082 0.918
37 H 0.085 0.915
38 H 0.091 0.909
39 H 0.109 0.891
40 H 0.081 0.919
41 H 0.054 0.946
42 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 6.672 -17.816 8.705 20.921
hybrid contribution 0.943 1.330 0.842 1.835
sum 7.615 -16.486 9.547 20.516
Atomic orbital electron populations
1.69982 1.05914 1.26426 1.50117 1.24981 0.94825 0.99056 0.94975
0.86565 0.80109 0.83909 0.77570 1.19797 1.20982 1.21105 1.21062
0.92754 0.90268 1.51228 0.92537 1.19781 0.92653 0.90793 0.93705
0.93935 1.22824 1.01996 0.91202 1.00164 1.22815 0.95293 0.96026
0.93400 1.63398 1.11068 1.18782 1.30987 1.22134 0.96347 0.92895
0.98162 1.20854 0.87457 0.84179 0.77044 1.90680 1.17051 1.78513
1.52804 1.48170 1.12758 1.19908 1.55074 1.21817 0.82197 1.02750
0.94856 1.22004 1.01406 0.98263 0.95823 1.21505 0.95759 0.97329
1.01055 1.21921 0.96923 1.02353 0.96111 1.21511 0.98800 0.86441
0.94302 1.23222 0.96446 0.90677 0.97672 0.93049 0.91156 0.93528
0.91310 0.95234 0.88726 0.92400 0.91383 0.89532 0.91350 0.90737
0.91804 0.91821 0.91521 0.90927 0.89051 0.91925 0.94608 0.91782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.75 12.63 55.43 0.70 -25.05 16
2 C 0.06 1.77 5.38 -17.82 -0.10 1.68 16
3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16
4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
7 C -0.51 -14.11 8.51 -34.44 -0.29 -14.40 16
8 H 0.06 1.51 7.77 -52.49 -0.41 1.11 16
9 C 0.05 1.27 2.85 -89.48 -0.26 1.02 16
10 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16
11 C -0.12 -2.96 5.91 -24.75 -0.15 -3.11 16
12 C 0.05 1.12 5.61 -2.83 -0.02 1.10 16
13 N -0.52 -10.53 4.87 -232.68 -1.13 -11.67 16
14 C 0.04 0.58 3.37 -4.98 -0.02 0.57 16
15 C 0.52 8.37 7.32 -10.99 -0.08 8.28 16
16 O -0.52 -10.41 14.92 5.55 0.08 -10.33 16
17 N -0.62 -7.59 2.97 -172.48 -0.51 -8.10 16
18 C 0.11 0.95 6.37 -3.48 -0.02 0.93 16
19 C -0.14 -1.04 6.10 -26.39 -0.16 -1.20 16
20 C -0.12 -0.84 5.88 -26.69 -0.16 -1.00 16
21 C -0.13 -1.14 6.08 -26.59 -0.16 -1.30 16
22 C 0.11 1.20 6.43 -3.69 -0.02 1.17 16
23 C 0.05 1.00 6.12 -2.30 -0.01 0.98 16
24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
25 H 0.07 1.82 7.85 -51.93 -0.41 1.42 16
26 H 0.05 1.13 8.04 -51.93 -0.42 0.71 16
27 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16
28 H 0.03 0.59 7.30 -51.93 -0.38 0.21 16
29 H 0.09 1.31 7.87 -51.93 -0.41 0.90 16
30 H 0.06 0.87 7.54 -51.93 -0.39 0.48 16
31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.09 0.75 5.93 -51.93 -0.31 0.44 16
33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.09 1.16 7.01 -51.93 -0.36 0.80 16
40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
41 H 0.04 0.73 7.68 -51.93 -0.40 0.33 16
42 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16
LS Contribution 327.03 15.07 4.93 4.93
Total: -1.00 -31.54 327.03 -9.67 -41.20
By element:
Atomic # 1 Polarization: 5.38 SS G_CDS: -7.27 Total: -1.89 kcal
Atomic # 6 Polarization: -3.85 SS G_CDS: -1.44 Total: -5.29 kcal
Atomic # 7 Polarization: -43.87 SS G_CDS: -0.94 Total: -44.81 kcal
Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -31.54 -9.67 -41.20 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397561212.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.248 kcal
(2) G-P(sol) polarization free energy of solvation -31.539 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.291 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.956 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds