Wall clock time and date at job start Mon Mar 30 2020 05:25:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86803 * 120.00206 * 2 1
4 4 H 1.48493 * 109.47036 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46987 * 300.00065 * 3 2 1
6 6 H 1.48503 * 109.46798 * 59.99806 * 3 2 1
7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1
9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1
10 10 H 1.08998 * 110.90031 * 56.14163 * 9 7 2
11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2
12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7
13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9
14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11
15 15 C 1.50699 * 109.47353 * 69.15552 * 14 13 12
16 16 O 1.21286 * 119.99556 * 0.02562 * 15 14 13
17 17 N 1.34771 * 120.00403 * 180.02562 * 15 14 13
18 18 C 1.46934 * 120.62699 * 359.72045 * 17 15 14
19 19 C 1.53622 * 108.53947 * 126.37241 * 18 17 15
20 20 C 1.53034 * 109.24431 * 54.85473 * 19 18 17
21 21 C 1.53041 * 109.54128 * 298.50803 * 20 19 18
22 22 C 1.46917 * 120.63463 * 180.02562 * 17 15 14
23 23 C 1.47846 * 108.56553 * 0.99350 * 13 12 11
24 24 H 0.97006 * 120.00009 * 0.02562 * 1 2 3
25 25 H 1.09004 * 110.69757 * 87.90335 * 11 9 7
26 26 H 1.09005 * 110.84788 * 324.75216 * 11 9 7
27 27 H 1.08999 * 109.88748 * 262.87827 * 12 11 9
28 28 H 1.09000 * 109.89149 * 141.68777 * 12 11 9
29 29 H 1.09001 * 109.47310 * 189.16067 * 14 13 12
30 30 H 1.09001 * 109.46761 * 309.15792 * 14 13 12
31 31 H 1.08999 * 109.58450 * 246.20617 * 18 17 15
32 32 H 1.09000 * 109.58750 * 6.62704 * 18 17 15
33 33 H 1.09002 * 109.63670 * 294.85925 * 19 18 17
34 34 H 1.09005 * 109.43244 * 174.72660 * 19 18 17
35 35 H 1.09005 * 109.46072 * 178.48730 * 20 19 18
36 36 H 1.09000 * 109.44770 * 58.52323 * 20 19 18
37 37 H 1.08995 * 109.49718 * 301.41634 * 21 20 19
38 38 H 1.08993 * 109.52438 * 181.33251 * 21 20 19
39 39 H 1.09004 * 109.58744 * 353.37013 * 22 17 15
40 40 H 1.09000 * 109.59149 * 113.65563 * 22 17 15
41 41 H 1.09002 * 110.37464 * 94.73346 * 23 13 12
42 42 H 1.08999 * 110.37318 * 216.96123 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 1 0.5649 -2.5521 -0.8459
11 6 0.4976 -2.7105 1.3424
12 6 0.3927 -4.2467 1.4450
13 7 1.4574 -4.8148 0.5977
14 6 2.3331 -5.7009 1.3760
15 6 1.5740 -6.9438 1.7634
16 8 0.4173 -7.0783 1.4241
17 7 2.1802 -7.9057 2.4869
18 6 3.5826 -7.7598 2.9002
19 6 3.6660 -7.9527 4.4220
20 6 3.0378 -9.2973 4.7952
21 6 1.5621 -9.3030 4.3896
22 6 1.4534 -9.1232 2.8717
23 6 2.2260 -3.7029 -0.0012
24 1 -0.4850 0.8401 -0.0004
25 1 -0.4934 -2.2583 1.3035
26 1 1.0714 -2.3069 2.1767
27 1 -0.5822 -4.5766 1.0863
28 1 0.5352 -4.5599 2.4793
29 1 3.1988 -5.9768 0.7738
30 1 2.6664 -5.1836 2.2757
31 1 4.1913 -8.5129 2.3997
32 1 3.9396 -6.7643 2.6364
33 1 3.1279 -7.1481 4.9232
34 1 4.7109 -7.9406 4.7324
35 1 3.1191 -9.4499 5.8714
36 1 3.5607 -10.0992 4.2742
37 1 1.0438 -8.4857 4.8910
38 1 1.1091 -10.2518 4.6768
39 1 0.4049 -9.0275 2.5892
40 1 1.8906 -9.9847 2.3671
41 1 3.1047 -3.4798 0.6040
42 1 2.5214 -3.9515 -1.0205
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397561212.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:25:36
Heat of formation + Delta-G solvation = -58.402425 kcal
Electronic energy + Delta-G solvation = -20819.656480 eV
Core-core repulsion = 17798.138943 eV
Total energy + Delta-G solvation = -3021.517537 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.30423 -39.51506 -38.10338 -35.09952 -33.95719 -32.65263 -31.84055 -30.03377
-28.29210 -26.36519 -25.50059 -24.01030 -22.23066 -21.55868 -21.34608 -19.83074
-18.48494 -18.15506 -17.07209 -16.92260 -16.47342 -16.05129 -15.82727 -15.39582
-15.05045 -14.80544 -14.43774 -14.23090 -14.15767 -14.04000 -13.58010 -13.40022
-13.23898 -13.00116 -12.76567 -12.64651 -12.26621 -12.19571 -12.03993 -11.84480
-11.58842 -11.57217 -11.47794 -11.20308 -10.93197 -10.68900 -10.50915 -9.61622
-9.17587 -8.13245 -6.24549 1.42344 1.43703 1.55593 1.63686 1.95206
2.43516 3.14374 3.19694 3.55380 3.86599 3.98874 4.01468 4.05707
4.15070 4.19304 4.29591 4.37600 4.41825 4.49550 4.55267 4.63239
4.66615 4.77767 4.85172 4.92939 4.95629 5.02367 5.07739 5.16433
5.22505 5.23881 5.28802 5.45868 5.57168 5.61445 5.75432 5.88112
6.00681 6.12949 6.34970 6.44105 6.86384 7.23919 7.43934 8.97050
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.037172 B = 0.003901 C = 0.003748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 753.082689 B = 7175.146515 C = 7469.724506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.010 3.990
3 Si 0.960 3.040
4 H -0.260 1.260
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.528 4.528
8 H 0.063 0.937
9 C 0.038 3.962
10 H 0.002 0.998
11 C -0.112 4.112
12 C 0.069 3.931
13 N -0.531 5.531
14 C 0.036 3.964
15 C 0.512 3.488
16 O -0.570 6.570
17 N -0.614 5.614
18 C 0.098 3.902
19 C -0.134 4.134
20 C -0.116 4.116
21 C -0.130 4.130
22 C 0.107 3.893
23 C 0.062 3.938
24 H 0.260 0.740
25 H 0.040 0.960
26 H 0.043 0.957
27 H 0.049 0.951
28 H 0.043 0.957
29 H 0.124 0.876
30 H 0.075 0.925
31 H 0.091 0.909
32 H 0.091 0.909
33 H 0.052 0.948
34 H 0.098 0.902
35 H 0.075 0.925
36 H 0.078 0.922
37 H 0.047 0.953
38 H 0.090 0.910
39 H 0.063 0.937
40 H 0.083 0.917
41 H 0.051 0.949
42 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.731 -18.693 10.473 23.964
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.189 4.189
3 Si 0.786 3.214
4 H -0.184 1.184
5 H -0.208 1.208
6 H -0.208 1.208
7 C -0.567 4.567
8 H 0.081 0.919
9 C 0.019 3.981
10 H 0.020 0.980
11 C -0.151 4.151
12 C -0.059 4.059
13 N -0.256 5.256
14 C -0.095 4.095
15 C 0.300 3.700
16 O -0.448 6.448
17 N -0.349 5.349
18 C -0.023 4.023
19 C -0.172 4.172
20 C -0.154 4.154
21 C -0.168 4.168
22 C -0.015 4.015
23 C -0.065 4.065
24 H 0.069 0.931
25 H 0.059 0.941
26 H 0.062 0.938
27 H 0.068 0.932
28 H 0.062 0.938
29 H 0.142 0.858
30 H 0.093 0.907
31 H 0.109 0.891
32 H 0.110 0.890
33 H 0.071 0.929
34 H 0.116 0.884
35 H 0.094 0.906
36 H 0.097 0.903
37 H 0.066 0.934
38 H 0.108 0.892
39 H 0.082 0.918
40 H 0.101 0.899
41 H 0.070 0.930
42 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 9.760 -18.973 9.903 23.523
hybrid contribution 0.011 1.589 0.493 1.664
sum 9.771 -17.384 10.397 22.489
Atomic orbital electron populations
1.70130 1.07597 1.27292 1.51140 1.25848 0.95619 1.02806 0.94611
0.85471 0.79285 0.79255 0.77427 1.18424 1.20838 1.20813 1.21416
0.93204 0.91190 1.50846 0.91850 1.19734 0.93142 0.92498 0.92703
0.97975 1.22620 1.00026 0.93094 0.99409 1.22537 0.95265 0.93760
0.94289 1.63276 1.11735 1.18572 1.32011 1.22244 0.96265 0.92125
0.98833 1.20901 0.86861 0.84891 0.77318 1.90666 1.19138 1.79658
1.55315 1.48248 1.14121 1.19183 1.53305 1.22151 0.80156 1.03948
0.96078 1.22008 1.02714 0.98011 0.94517 1.21516 0.94348 0.97497
1.01993 1.21891 0.98348 1.02532 0.94022 1.21656 0.97339 0.86345
0.96160 1.22993 0.95677 0.89172 0.98642 0.93076 0.94108 0.93817
0.93245 0.93843 0.85841 0.90743 0.89058 0.89042 0.92907 0.88359
0.90649 0.90342 0.93397 0.89193 0.91850 0.89904 0.93048 0.91085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.02 12.63 21.45 0.27 -54.75 16
2 C 0.01 0.56 5.38 84.65 0.46 1.01 16
3 Si 0.96 43.49 29.54 68.60 2.03 45.51 16
4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16
5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
7 C -0.53 -29.07 8.51 25.60 0.22 -28.85 16
8 H 0.06 3.33 7.77 -2.91 -0.02 3.30 16
9 C 0.04 2.01 2.85 -10.05 -0.03 1.98 16
10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16
11 C -0.11 -5.59 5.91 31.88 0.19 -5.40 16
12 C 0.07 3.03 5.61 86.65 0.49 3.51 16
13 N -0.53 -21.35 4.87 -890.07 -4.33 -25.68 16
14 C 0.04 1.09 3.37 85.56 0.29 1.38 16
15 C 0.51 16.11 7.32 87.66 0.64 16.76 16
16 O -0.57 -23.36 14.92 -3.05 -0.05 -23.41 16
17 N -0.61 -13.84 2.97 -817.99 -2.43 -16.27 16
18 C 0.10 1.41 6.37 86.51 0.55 1.96 16
19 C -0.13 -1.59 6.10 30.81 0.19 -1.40 16
20 C -0.12 -1.25 5.88 30.62 0.18 -1.07 16
21 C -0.13 -1.95 6.08 30.69 0.19 -1.76 16
22 C 0.11 2.15 6.43 86.38 0.56 2.70 16
23 C 0.06 2.60 6.12 86.77 0.53 3.13 16
24 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16
25 H 0.04 2.22 7.85 -2.38 -0.02 2.20 16
26 H 0.04 2.15 8.04 -2.38 -0.02 2.13 16
27 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16
28 H 0.04 1.75 7.30 -2.39 -0.02 1.73 16
29 H 0.12 2.99 7.87 -2.39 -0.02 2.97 16
30 H 0.07 2.03 7.54 -2.39 -0.02 2.02 16
31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
32 H 0.09 1.24 5.93 -2.39 -0.01 1.22 16
33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
34 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16
35 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16
36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
39 H 0.06 1.64 7.01 -2.38 -0.02 1.63 16
40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
41 H 0.05 1.99 7.68 -2.39 -0.02 1.97 16
42 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16
Total: -1.00 -70.43 327.03 0.91 -69.52
By element:
Atomic # 1 Polarization: 10.14 SS G_CDS: 0.97 Total: 11.11 kcal
Atomic # 6 Polarization: -10.49 SS G_CDS: 4.44 Total: -6.05 kcal
Atomic # 7 Polarization: -90.20 SS G_CDS: -6.49 Total: -96.69 kcal
Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal
Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal
Total: -70.43 0.91 -69.52 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397561212.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.120 kcal
(2) G-P(sol) polarization free energy of solvation -70.431 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.311 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.402 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds