Wall clock time and date at job start Mon Mar 30 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46987 * 300.00065 * 3 2 1 6 6 H 1.48503 * 109.46798 * 59.99806 * 3 2 1 7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.90031 * 56.14163 * 9 7 2 11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2 12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7 13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9 14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11 15 15 C 1.50699 * 109.47353 * 69.15552 * 14 13 12 16 16 O 1.21286 * 119.99556 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00403 * 180.02562 * 15 14 13 18 18 C 1.46934 * 120.62699 * 359.72045 * 17 15 14 19 19 C 1.53622 * 108.53947 * 126.37241 * 18 17 15 20 20 C 1.53034 * 109.24431 * 54.85473 * 19 18 17 21 21 C 1.53041 * 109.54128 * 298.50803 * 20 19 18 22 22 C 1.46917 * 120.63463 * 180.02562 * 17 15 14 23 23 C 1.47846 * 108.56553 * 0.99350 * 13 12 11 24 24 H 0.97006 * 120.00009 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.69757 * 87.90335 * 11 9 7 26 26 H 1.09005 * 110.84788 * 324.75216 * 11 9 7 27 27 H 1.08999 * 109.88748 * 262.87827 * 12 11 9 28 28 H 1.09000 * 109.89149 * 141.68777 * 12 11 9 29 29 H 1.09001 * 109.47310 * 189.16067 * 14 13 12 30 30 H 1.09001 * 109.46761 * 309.15792 * 14 13 12 31 31 H 1.08999 * 109.58450 * 246.20617 * 18 17 15 32 32 H 1.09000 * 109.58750 * 6.62704 * 18 17 15 33 33 H 1.09002 * 109.63670 * 294.85925 * 19 18 17 34 34 H 1.09005 * 109.43244 * 174.72660 * 19 18 17 35 35 H 1.09005 * 109.46072 * 178.48730 * 20 19 18 36 36 H 1.09000 * 109.44770 * 58.52323 * 20 19 18 37 37 H 1.08995 * 109.49718 * 301.41634 * 21 20 19 38 38 H 1.08993 * 109.52438 * 181.33251 * 21 20 19 39 39 H 1.09004 * 109.58744 * 353.37013 * 22 17 15 40 40 H 1.09000 * 109.59149 * 113.65563 * 22 17 15 41 41 H 1.09002 * 110.37464 * 94.73346 * 23 13 12 42 42 H 1.08999 * 110.37318 * 216.96123 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5649 -2.5521 -0.8459 11 6 0.4976 -2.7105 1.3424 12 6 0.3927 -4.2467 1.4450 13 7 1.4574 -4.8148 0.5977 14 6 2.3331 -5.7009 1.3760 15 6 1.5740 -6.9438 1.7634 16 8 0.4173 -7.0783 1.4241 17 7 2.1802 -7.9057 2.4869 18 6 3.5826 -7.7598 2.9002 19 6 3.6660 -7.9527 4.4220 20 6 3.0378 -9.2973 4.7952 21 6 1.5621 -9.3030 4.3896 22 6 1.4534 -9.1232 2.8717 23 6 2.2260 -3.7029 -0.0012 24 1 -0.4850 0.8401 -0.0004 25 1 -0.4934 -2.2583 1.3035 26 1 1.0714 -2.3069 2.1767 27 1 -0.5822 -4.5766 1.0863 28 1 0.5352 -4.5599 2.4793 29 1 3.1988 -5.9768 0.7738 30 1 2.6664 -5.1836 2.2757 31 1 4.1913 -8.5129 2.3997 32 1 3.9396 -6.7643 2.6364 33 1 3.1279 -7.1481 4.9232 34 1 4.7109 -7.9406 4.7324 35 1 3.1191 -9.4499 5.8714 36 1 3.5607 -10.0992 4.2742 37 1 1.0438 -8.4857 4.8910 38 1 1.1091 -10.2518 4.6768 39 1 0.4049 -9.0275 2.5892 40 1 1.8906 -9.9847 2.3671 41 1 3.1047 -3.4798 0.6040 42 1 2.5214 -3.9515 -1.0205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397561212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:36 Heat of formation + Delta-G solvation = -58.402425 kcal Electronic energy + Delta-G solvation = -20819.656480 eV Core-core repulsion = 17798.138943 eV Total energy + Delta-G solvation = -3021.517537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30423 -39.51506 -38.10338 -35.09952 -33.95719 -32.65263 -31.84055 -30.03377 -28.29210 -26.36519 -25.50059 -24.01030 -22.23066 -21.55868 -21.34608 -19.83074 -18.48494 -18.15506 -17.07209 -16.92260 -16.47342 -16.05129 -15.82727 -15.39582 -15.05045 -14.80544 -14.43774 -14.23090 -14.15767 -14.04000 -13.58010 -13.40022 -13.23898 -13.00116 -12.76567 -12.64651 -12.26621 -12.19571 -12.03993 -11.84480 -11.58842 -11.57217 -11.47794 -11.20308 -10.93197 -10.68900 -10.50915 -9.61622 -9.17587 -8.13245 -6.24549 1.42344 1.43703 1.55593 1.63686 1.95206 2.43516 3.14374 3.19694 3.55380 3.86599 3.98874 4.01468 4.05707 4.15070 4.19304 4.29591 4.37600 4.41825 4.49550 4.55267 4.63239 4.66615 4.77767 4.85172 4.92939 4.95629 5.02367 5.07739 5.16433 5.22505 5.23881 5.28802 5.45868 5.57168 5.61445 5.75432 5.88112 6.00681 6.12949 6.34970 6.44105 6.86384 7.23919 7.43934 8.97050 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.003901 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.082689 B = 7175.146515 C = 7469.724506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.038 3.962 10 H 0.002 0.998 11 C -0.112 4.112 12 C 0.069 3.931 13 N -0.531 5.531 14 C 0.036 3.964 15 C 0.512 3.488 16 O -0.570 6.570 17 N -0.614 5.614 18 C 0.098 3.902 19 C -0.134 4.134 20 C -0.116 4.116 21 C -0.130 4.130 22 C 0.107 3.893 23 C 0.062 3.938 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.731 -18.693 10.473 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.020 0.980 11 C -0.151 4.151 12 C -0.059 4.059 13 N -0.256 5.256 14 C -0.095 4.095 15 C 0.300 3.700 16 O -0.448 6.448 17 N -0.349 5.349 18 C -0.023 4.023 19 C -0.172 4.172 20 C -0.154 4.154 21 C -0.168 4.168 22 C -0.015 4.015 23 C -0.065 4.065 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.760 -18.973 9.903 23.523 hybrid contribution 0.011 1.589 0.493 1.664 sum 9.771 -17.384 10.397 22.489 Atomic orbital electron populations 1.70130 1.07597 1.27292 1.51140 1.25848 0.95619 1.02806 0.94611 0.85471 0.79285 0.79255 0.77427 1.18424 1.20838 1.20813 1.21416 0.93204 0.91190 1.50846 0.91850 1.19734 0.93142 0.92498 0.92703 0.97975 1.22620 1.00026 0.93094 0.99409 1.22537 0.95265 0.93760 0.94289 1.63276 1.11735 1.18572 1.32011 1.22244 0.96265 0.92125 0.98833 1.20901 0.86861 0.84891 0.77318 1.90666 1.19138 1.79658 1.55315 1.48248 1.14121 1.19183 1.53305 1.22151 0.80156 1.03948 0.96078 1.22008 1.02714 0.98011 0.94517 1.21516 0.94348 0.97497 1.01993 1.21891 0.98348 1.02532 0.94022 1.21656 0.97339 0.86345 0.96160 1.22993 0.95677 0.89172 0.98642 0.93076 0.94108 0.93817 0.93245 0.93843 0.85841 0.90743 0.89058 0.89042 0.92907 0.88359 0.90649 0.90342 0.93397 0.89193 0.91850 0.89904 0.93048 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.02 12.63 21.45 0.27 -54.75 16 2 C 0.01 0.56 5.38 84.65 0.46 1.01 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.53 -29.07 8.51 25.60 0.22 -28.85 16 8 H 0.06 3.33 7.77 -2.91 -0.02 3.30 16 9 C 0.04 2.01 2.85 -10.05 -0.03 1.98 16 10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 11 C -0.11 -5.59 5.91 31.88 0.19 -5.40 16 12 C 0.07 3.03 5.61 86.65 0.49 3.51 16 13 N -0.53 -21.35 4.87 -890.07 -4.33 -25.68 16 14 C 0.04 1.09 3.37 85.56 0.29 1.38 16 15 C 0.51 16.11 7.32 87.66 0.64 16.76 16 16 O -0.57 -23.36 14.92 -3.05 -0.05 -23.41 16 17 N -0.61 -13.84 2.97 -817.99 -2.43 -16.27 16 18 C 0.10 1.41 6.37 86.51 0.55 1.96 16 19 C -0.13 -1.59 6.10 30.81 0.19 -1.40 16 20 C -0.12 -1.25 5.88 30.62 0.18 -1.07 16 21 C -0.13 -1.95 6.08 30.69 0.19 -1.76 16 22 C 0.11 2.15 6.43 86.38 0.56 2.70 16 23 C 0.06 2.60 6.12 86.77 0.53 3.13 16 24 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 25 H 0.04 2.22 7.85 -2.38 -0.02 2.20 16 26 H 0.04 2.15 8.04 -2.38 -0.02 2.13 16 27 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.04 1.75 7.30 -2.39 -0.02 1.73 16 29 H 0.12 2.99 7.87 -2.39 -0.02 2.97 16 30 H 0.07 2.03 7.54 -2.39 -0.02 2.02 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.24 5.93 -2.39 -0.01 1.22 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.64 7.01 -2.38 -0.02 1.63 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.99 7.68 -2.39 -0.02 1.97 16 42 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -70.43 327.03 0.91 -69.52 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.97 Total: 11.11 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.44 Total: -6.05 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -6.49 Total: -96.69 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.43 0.91 -69.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397561212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.120 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds