Wall clock time and date at job start Mon Mar 30 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48498 * 109.47536 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.47118 * 30.00411 * 3 2 1 6 6 H 1.48500 * 109.46981 * 149.99886 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09011 * 110.27033 * 302.09207 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.50694 * 109.47194 * 52.66331 * 14 13 12 16 16 O 1.21285 * 120.00082 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00402 * 179.97438 * 15 14 13 18 18 C 1.46928 * 120.62852 * 359.72701 * 17 15 14 19 19 C 1.53622 * 108.54643 * 126.36151 * 18 17 15 20 20 C 1.53043 * 109.23713 * 54.85998 * 19 18 17 21 21 C 1.53046 * 109.53727 * 298.50831 * 20 19 18 22 22 C 1.46925 * 120.63525 * 179.97438 * 17 15 14 23 23 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 24 24 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 26 26 H 1.08999 * 110.72080 * 22.51964 * 11 9 7 27 27 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 28 28 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 29 29 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 30 30 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 31 31 H 1.09000 * 109.58738 * 246.20037 * 18 17 15 32 32 H 1.09002 * 109.58192 * 6.62324 * 18 17 15 33 33 H 1.08992 * 109.63545 * 294.86832 * 19 18 17 34 34 H 1.08995 * 109.42974 * 174.72312 * 19 18 17 35 35 H 1.08997 * 109.45807 * 178.48930 * 20 19 18 36 36 H 1.08993 * 109.46209 * 58.53002 * 20 19 18 37 37 H 1.09005 * 109.49322 * 301.41432 * 21 20 19 38 38 H 1.08995 * 109.49515 * 181.32284 * 21 20 19 39 39 H 1.09001 * 109.58445 * 353.38238 * 22 17 15 40 40 H 1.08998 * 109.58284 * 113.80222 * 22 17 15 41 41 H 1.09002 * 109.91668 * 215.45268 * 23 13 12 42 42 H 1.09002 * 109.91761 * 94.35443 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 1.7406 -6.6385 -2.2545 16 8 1.2784 -6.0391 -3.2022 17 7 1.8323 -7.9827 -2.2871 18 6 2.3965 -8.7224 -1.1498 19 6 1.3871 -9.7963 -0.7163 20 6 1.0330 -10.6711 -1.9211 21 6 0.3828 -9.8094 -3.0059 22 6 1.3750 -8.7360 -3.4628 23 6 2.2345 -3.6841 -0.0020 24 1 -0.4851 0.8401 -0.0004 25 1 -0.6104 -2.4039 -1.1404 26 1 0.8593 -2.0254 -2.0975 27 1 -0.0910 -4.7560 -1.0663 28 1 0.4615 -4.3210 -2.7164 29 1 3.2736 -6.0760 -0.8805 30 1 1.6477 -6.2035 -0.1673 31 1 3.3316 -9.1955 -1.4493 32 1 2.5800 -8.0364 -0.3228 33 1 0.4845 -9.3183 -0.3360 34 1 1.8288 -10.4147 0.0650 35 1 0.3375 -11.4511 -1.6115 36 1 1.9396 -11.1293 -2.3162 37 1 -0.5105 -9.3313 -2.6039 38 1 0.1096 -10.4371 -3.8540 39 1 0.8846 -8.0591 -4.1624 40 1 2.2284 -9.2103 -3.9474 41 1 3.2599 -3.3156 0.0284 42 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397561214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:40 Heat of formation + Delta-G solvation = -32.386487 kcal Electronic energy + Delta-G solvation = -20871.943374 eV Core-core repulsion = 17851.553973 eV Total energy + Delta-G solvation = -3020.389401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24445 -38.07579 -36.84301 -33.27004 -32.93048 -31.50123 -30.51753 -28.05999 -26.80336 -25.05609 -23.91716 -23.17963 -21.12855 -20.15916 -19.37730 -18.91099 -17.00156 -16.46530 -15.96987 -15.48828 -14.84166 -14.70769 -14.42940 -14.33672 -14.10795 -13.93493 -13.34601 -12.99350 -12.71464 -12.53405 -12.32813 -11.88304 -11.53628 -11.34890 -11.22999 -11.13995 -10.96588 -10.83584 -10.80972 -10.58439 -10.52015 -10.14074 -9.70436 -9.29611 -9.10061 -8.71087 -8.66587 -8.29698 -7.65397 -5.93915 -3.95508 2.79238 2.92208 3.37140 3.43265 3.46312 4.39913 4.50621 4.52072 4.59274 4.70001 4.81050 4.87619 5.03374 5.20677 5.26553 5.39215 5.47173 5.48805 5.52604 5.57213 5.60132 5.68486 5.77054 5.85104 5.97719 6.04723 6.17445 6.30479 6.39101 6.49399 6.85594 6.92646 7.22325 7.30577 7.41006 7.53674 7.73578 7.82219 7.97405 8.10389 8.38201 8.51921 9.05545 9.67341 11.16279 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.047798 B = 0.003793 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.654713 B = 7380.366602 C = 7533.940583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.092 4.092 12 C 0.029 3.971 13 N -0.501 5.501 14 C 0.030 3.970 15 C 0.517 3.483 16 O -0.517 6.517 17 N -0.621 5.621 18 C 0.107 3.893 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.135 4.135 22 C 0.112 3.888 23 C 0.044 3.956 24 H 0.259 0.741 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -21.919 -1.984 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.131 4.131 12 C -0.098 4.098 13 N -0.226 5.226 14 C -0.101 4.101 15 C 0.305 3.695 16 O -0.391 6.391 17 N -0.357 5.357 18 C -0.016 4.016 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.173 4.173 22 C -0.011 4.011 23 C -0.083 4.083 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.613 -21.289 -2.898 21.644 hybrid contribution -0.091 0.448 0.780 0.904 sum 2.522 -20.841 -2.118 21.099 Atomic orbital electron populations 1.69976 1.05893 1.26381 1.50750 1.24980 0.94847 0.99041 0.95243 0.86609 0.79799 0.83580 0.78085 1.20701 1.21412 1.19969 1.21178 0.92712 0.90193 1.50405 0.92478 1.19500 0.92481 0.91777 0.94178 0.95223 1.22418 1.00014 0.91138 0.99550 1.23612 0.86648 0.98259 1.01253 1.64807 1.25185 1.02379 1.30239 1.22237 1.01966 0.91731 0.94188 1.20801 0.77926 0.81267 0.89508 1.90655 1.44062 1.66988 1.37416 1.48166 1.63646 1.05864 1.18032 1.21825 0.96086 0.94723 0.89016 1.22003 0.99955 0.97467 0.98057 1.21507 1.00779 0.97723 0.95657 1.21913 0.98900 0.97434 0.99091 1.21510 0.97434 0.93938 0.88187 1.23169 1.02094 0.95560 0.87482 0.93155 0.92439 0.92018 0.96334 0.89004 0.88587 0.92644 0.91321 0.89537 0.91372 0.90730 0.91787 0.91803 0.91512 0.90880 0.88965 0.91872 0.90935 0.96251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 12.63 55.43 0.70 -25.55 16 2 C 0.06 1.71 5.34 -17.82 -0.10 1.62 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.27 8.37 -34.44 -0.29 -14.56 16 8 H 0.06 1.59 7.34 -52.48 -0.39 1.20 16 9 C 0.04 1.02 2.87 -90.42 -0.26 0.76 16 10 H 0.03 0.82 8.14 -51.92 -0.42 0.40 16 11 C -0.09 -2.33 5.75 -24.87 -0.14 -2.47 16 12 C 0.03 0.64 5.31 -1.74 -0.01 0.63 16 13 N -0.50 -10.37 5.27 -231.64 -1.22 -11.59 16 14 C 0.03 0.48 3.87 -4.98 -0.02 0.46 16 15 C 0.52 8.27 7.41 -10.99 -0.08 8.19 16 16 O -0.52 -10.25 12.95 5.55 0.07 -10.18 16 17 N -0.62 -7.44 2.97 -172.53 -0.51 -7.95 16 18 C 0.11 0.92 6.37 -3.49 -0.02 0.89 16 19 C -0.14 -1.00 6.10 -26.39 -0.16 -1.16 16 20 C -0.12 -0.82 5.88 -26.69 -0.16 -0.98 16 21 C -0.14 -1.12 6.08 -26.63 -0.16 -1.28 16 22 C 0.11 1.18 6.43 -3.74 -0.02 1.15 16 23 C 0.04 0.96 6.34 -2.75 -0.02 0.94 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.06 1.50 8.12 -51.93 -0.42 1.07 16 26 H 0.06 1.68 7.86 -51.93 -0.41 1.27 16 27 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 28 H 0.09 2.09 6.00 -51.93 -0.31 1.78 16 29 H 0.10 1.31 7.93 -51.93 -0.41 0.90 16 30 H 0.06 0.81 7.38 -51.92 -0.38 0.42 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.71 5.93 -51.93 -0.31 0.40 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 1.16 7.01 -51.93 -0.36 0.80 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.59 7.39 -51.93 -0.38 1.21 16 42 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -32.01 322.92 -9.68 -41.69 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -7.13 Total: -2.30 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.44 Total: -5.80 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -1.03 Total: -45.09 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.01 -9.68 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397561214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.306 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds