Wall clock time and date at job start Mon Mar 30 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48498 * 109.47536 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.47118 * 30.00411 * 3 2 1 6 6 H 1.48500 * 109.46981 * 149.99886 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09011 * 110.27033 * 302.09207 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.50694 * 109.47194 * 52.66331 * 14 13 12 16 16 O 1.21285 * 120.00082 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00402 * 179.97438 * 15 14 13 18 18 C 1.46928 * 120.62852 * 359.72701 * 17 15 14 19 19 C 1.53622 * 108.54643 * 126.36151 * 18 17 15 20 20 C 1.53043 * 109.23713 * 54.85998 * 19 18 17 21 21 C 1.53046 * 109.53727 * 298.50831 * 20 19 18 22 22 C 1.46925 * 120.63525 * 179.97438 * 17 15 14 23 23 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 24 24 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 26 26 H 1.08999 * 110.72080 * 22.51964 * 11 9 7 27 27 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 28 28 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 29 29 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 30 30 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 31 31 H 1.09000 * 109.58738 * 246.20037 * 18 17 15 32 32 H 1.09002 * 109.58192 * 6.62324 * 18 17 15 33 33 H 1.08992 * 109.63545 * 294.86832 * 19 18 17 34 34 H 1.08995 * 109.42974 * 174.72312 * 19 18 17 35 35 H 1.08997 * 109.45807 * 178.48930 * 20 19 18 36 36 H 1.08993 * 109.46209 * 58.53002 * 20 19 18 37 37 H 1.09005 * 109.49322 * 301.41432 * 21 20 19 38 38 H 1.08995 * 109.49515 * 181.32284 * 21 20 19 39 39 H 1.09001 * 109.58445 * 353.38238 * 22 17 15 40 40 H 1.08998 * 109.58284 * 113.80222 * 22 17 15 41 41 H 1.09002 * 109.91668 * 215.45268 * 23 13 12 42 42 H 1.09002 * 109.91761 * 94.35443 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 1.7406 -6.6385 -2.2545 16 8 1.2784 -6.0391 -3.2022 17 7 1.8323 -7.9827 -2.2871 18 6 2.3965 -8.7224 -1.1498 19 6 1.3871 -9.7963 -0.7163 20 6 1.0330 -10.6711 -1.9211 21 6 0.3828 -9.8094 -3.0059 22 6 1.3750 -8.7360 -3.4628 23 6 2.2345 -3.6841 -0.0020 24 1 -0.4851 0.8401 -0.0004 25 1 -0.6104 -2.4039 -1.1404 26 1 0.8593 -2.0254 -2.0975 27 1 -0.0910 -4.7560 -1.0663 28 1 0.4615 -4.3210 -2.7164 29 1 3.2736 -6.0760 -0.8805 30 1 1.6477 -6.2035 -0.1673 31 1 3.3316 -9.1955 -1.4493 32 1 2.5800 -8.0364 -0.3228 33 1 0.4845 -9.3183 -0.3360 34 1 1.8288 -10.4147 0.0650 35 1 0.3375 -11.4511 -1.6115 36 1 1.9396 -11.1293 -2.3162 37 1 -0.5105 -9.3313 -2.6039 38 1 0.1096 -10.4371 -3.8540 39 1 0.8846 -8.0591 -4.1624 40 1 2.2284 -9.2103 -3.9474 41 1 3.2599 -3.3156 0.0284 42 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397561214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:40 Heat of formation + Delta-G solvation = -53.602970 kcal Electronic energy + Delta-G solvation = -20872.863390 eV Core-core repulsion = 17851.553973 eV Total energy + Delta-G solvation = -3021.309417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37744 -39.47875 -38.09930 -35.10204 -33.99889 -32.67312 -31.85928 -29.95623 -28.22863 -26.34777 -25.46436 -24.02194 -22.30071 -21.55747 -21.27787 -19.87586 -18.58263 -18.13090 -17.21985 -16.67127 -16.50598 -16.03870 -15.81719 -15.39225 -15.08853 -14.85685 -14.51889 -14.39612 -14.02686 -13.86395 -13.79679 -13.22138 -13.15508 -12.88083 -12.73632 -12.54882 -12.36728 -12.19785 -12.05340 -11.85819 -11.69258 -11.48476 -11.44914 -11.25080 -10.82957 -10.62664 -10.39751 -9.62870 -9.24779 -8.11598 -6.20384 1.42089 1.43848 1.53565 1.60140 1.93965 2.45074 3.15942 3.21542 3.50821 3.86567 3.98921 4.01824 4.10816 4.15263 4.24730 4.28807 4.37469 4.44766 4.53677 4.55659 4.59313 4.63194 4.83969 4.91538 4.92979 4.98680 5.02535 5.07451 5.16230 5.22657 5.23790 5.41193 5.45676 5.53867 5.63208 5.69254 5.84374 6.09955 6.14792 6.37098 6.43806 6.88138 7.21664 7.46207 8.98295 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.047798 B = 0.003793 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.654713 B = 7380.366602 C = 7533.940583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.031 3.969 10 H 0.005 0.995 11 C -0.085 4.085 12 C 0.050 3.950 13 N -0.517 5.517 14 C 0.031 3.969 15 C 0.510 3.490 16 O -0.568 6.568 17 N -0.612 5.612 18 C 0.098 3.902 19 C -0.134 4.134 20 C -0.116 4.116 21 C -0.130 4.130 22 C 0.107 3.893 23 C 0.057 3.943 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 -24.151 -1.176 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.012 3.988 10 H 0.023 0.977 11 C -0.124 4.124 12 C -0.078 4.078 13 N -0.242 5.242 14 C -0.100 4.100 15 C 0.299 3.701 16 O -0.447 6.447 17 N -0.346 5.346 18 C -0.024 4.024 19 C -0.172 4.172 20 C -0.154 4.154 21 C -0.168 4.168 22 C -0.015 4.015 23 C -0.070 4.070 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.101 0.899 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.337 -23.586 -2.064 24.070 hybrid contribution -0.622 1.037 0.523 1.317 sum 3.715 -22.549 -1.541 22.904 Atomic orbital electron populations 1.70104 1.07354 1.27205 1.51542 1.25805 0.95699 1.02626 0.94889 0.85566 0.78872 0.79223 0.78061 1.20581 1.20899 1.18765 1.21543 0.92962 0.91533 1.50253 0.92442 1.19493 0.93080 0.93151 0.93119 0.97685 1.22200 0.98385 0.93271 0.98553 1.23299 0.88052 0.95595 1.00838 1.64671 1.23889 1.05699 1.29925 1.22353 1.04098 0.88603 0.94966 1.20865 0.77733 0.82597 0.88896 1.90638 1.46663 1.68365 1.39004 1.48241 1.62267 1.04814 1.19306 1.22166 0.97217 0.95028 0.87964 1.22005 0.99086 0.97274 0.98837 1.21519 1.01526 0.97521 0.94823 1.21881 0.97582 0.97029 1.00328 1.21647 0.98566 0.93808 0.87491 1.22918 1.00544 0.94553 0.89016 0.93153 0.94481 0.94991 0.95462 0.89949 0.85699 0.90546 0.89071 0.88893 0.92862 0.88305 0.90652 0.90377 0.93369 0.89230 0.91778 0.89925 0.91065 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.71 12.63 21.45 0.27 -55.44 16 2 C 0.01 0.47 5.34 84.65 0.45 0.92 16 3 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.52 -29.99 8.37 25.60 0.21 -29.77 16 8 H 0.06 3.20 7.34 -2.91 -0.02 3.18 16 9 C 0.03 1.61 2.87 -10.66 -0.03 1.58 16 10 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 11 C -0.09 -4.47 5.75 31.80 0.18 -4.28 16 12 C 0.05 2.21 5.31 86.59 0.46 2.67 16 13 N -0.52 -20.97 5.27 -886.79 -4.67 -25.64 16 14 C 0.03 0.90 3.87 85.56 0.33 1.23 16 15 C 0.51 15.81 7.41 87.65 0.65 16.46 16 16 O -0.57 -22.88 12.95 -3.05 -0.04 -22.92 16 17 N -0.61 -13.49 2.97 -818.15 -2.43 -15.92 16 18 C 0.10 1.34 6.37 86.51 0.55 1.89 16 19 C -0.13 -1.49 6.10 30.82 0.19 -1.30 16 20 C -0.12 -1.21 5.88 30.62 0.18 -1.03 16 21 C -0.13 -1.91 6.08 30.66 0.19 -1.73 16 22 C 0.11 2.11 6.43 86.35 0.55 2.67 16 23 C 0.06 2.42 6.34 86.44 0.55 2.96 16 24 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 25 H 0.04 2.02 8.12 -2.39 -0.02 2.00 16 26 H 0.03 1.81 7.86 -2.39 -0.02 1.79 16 27 H 0.03 1.15 8.02 -2.39 -0.02 1.13 16 28 H 0.08 3.88 6.00 -2.38 -0.01 3.86 16 29 H 0.13 2.97 7.93 -2.39 -0.02 2.95 16 30 H 0.08 1.98 7.38 -2.38 -0.02 1.96 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.17 5.93 -2.39 -0.01 1.15 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.64 7.01 -2.39 -0.02 1.63 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 3.04 7.39 -2.39 -0.02 3.02 16 42 H 0.05 1.68 7.57 -2.39 -0.02 1.66 16 Total: -1.00 -71.47 322.92 0.61 -70.87 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.98 Total: 9.60 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.47 Total: -7.73 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -6.83 Total: -97.00 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -71.47 0.61 -70.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397561214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.262 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds