Wall clock time and date at job start Mon Mar 30 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47025 * 274.98423 * 3 2 1 5 5 H 1.48498 * 109.47370 * 34.98865 * 3 2 1 6 6 H 1.48504 * 109.47008 * 154.98829 * 3 2 1 7 7 C 1.37874 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00224 * 189.55998 * 7 2 1 9 9 C 1.50705 * 119.99685 * 9.56369 * 7 2 1 10 10 H 1.08999 * 109.50300 * 305.50640 * 9 7 2 11 11 C 1.53118 * 109.50241 * 65.62444 * 9 7 2 12 12 C 1.53126 * 109.15984 * 177.59288 * 11 9 7 13 13 C 1.53042 * 109.27747 * 302.35074 * 12 11 9 14 14 N 1.46842 * 109.52523 * 59.17471 * 13 12 11 15 15 C 1.46902 * 110.99980 * 174.15997 * 14 13 12 16 16 C 1.53000 * 109.47131 * 294.21237 * 15 14 13 17 17 C 1.50702 * 109.46873 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00451 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99813 * 179.97438 * 17 16 15 20 20 C 1.46496 * 120.00398 * 180.02562 * 19 17 16 21 21 C 1.52997 * 117.50358 * 155.00025 * 20 19 17 22 22 C 1.52996 * 60.00105 * 107.49190 * 21 20 19 23 23 C 1.46850 * 111.20185 * 298.25821 * 14 13 12 24 24 H 0.96997 * 119.99578 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.52707 * 297.49793 * 11 9 7 26 26 H 1.09009 * 109.52251 * 57.62901 * 11 9 7 27 27 H 1.08998 * 109.49684 * 62.28565 * 12 11 9 28 28 H 1.08994 * 109.50616 * 182.36875 * 12 11 9 29 29 H 1.09009 * 109.45813 * 299.15887 * 13 12 11 30 30 H 1.09003 * 109.45852 * 179.19659 * 13 12 11 31 31 H 1.09002 * 109.47092 * 174.20905 * 15 14 13 32 32 H 1.09005 * 109.46768 * 54.20979 * 15 14 13 33 33 H 1.08999 * 109.46918 * 59.99723 * 16 15 14 34 34 H 1.08997 * 109.47189 * 299.99899 * 16 15 14 35 35 H 0.97005 * 120.00053 * 0.02562 * 19 17 16 36 36 H 1.09005 * 115.55721 * 9.30926 * 20 19 17 37 37 H 1.09004 * 117.49945 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.49797 * 214.98165 * 21 20 19 39 39 H 1.08998 * 117.49968 * 107.48825 * 22 21 20 40 40 H 1.09001 * 117.49711 * 252.49176 * 22 21 20 41 41 H 1.08998 * 109.46263 * 181.75835 * 23 14 13 42 42 H 1.09005 * 109.46095 * 301.74099 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3913 2.1073 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5955 1.4121 0.5920 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2005 0.1559 9 6 1.2667 -2.4902 -0.2157 10 1 0.4550 -2.5718 0.5071 11 6 0.6933 -2.5212 -1.6352 12 6 -0.0026 -3.8654 -1.8667 13 6 0.9995 -4.9993 -1.6379 14 7 1.5184 -4.9262 -0.2662 15 6 2.3777 -6.0793 0.0337 16 6 1.5374 -7.3578 0.0241 17 6 2.4191 -8.5408 0.3311 18 8 3.6030 -8.3774 0.5377 19 7 1.8919 -9.7803 0.3771 20 6 2.7488 -10.9302 0.6760 21 6 2.0845 -12.1675 1.2833 22 6 2.5605 -12.1907 -0.1705 23 6 2.2320 -3.6638 -0.0348 24 1 -0.4849 0.8401 -0.0004 25 1 -0.0275 -1.7125 -1.7547 26 1 1.5009 -2.3991 -2.3570 27 1 -0.8346 -3.9690 -1.1702 28 1 -0.3765 -3.9103 -2.8895 29 1 1.8244 -4.9028 -2.3439 30 1 0.5033 -5.9582 -1.7880 31 1 2.8303 -5.9493 1.0168 32 1 3.1615 -6.1541 -0.7201 33 1 1.0849 -7.4878 -0.9590 34 1 0.7536 -7.2831 0.7779 35 1 0.9449 -9.9110 0.2122 36 1 3.7605 -10.6903 1.0034 37 1 1.0097 -12.1260 1.4601 38 1 2.6591 -12.7415 2.0103 39 1 3.4482 -12.7800 -0.4001 40 1 1.7989 -12.1647 -0.9499 41 1 2.6312 -3.6528 0.9794 42 1 3.0510 -3.5736 -0.7485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397744236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:22 Heat of formation + Delta-G solvation = -23.376224 kcal Electronic energy + Delta-G solvation = -20087.454676 eV Core-core repulsion = 17067.455989 eV Total energy + Delta-G solvation = -3019.998687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99558 -38.24380 -37.27121 -34.11307 -33.06475 -32.11620 -30.18124 -29.41384 -24.93057 -24.57132 -22.76965 -22.31780 -21.69024 -21.08424 -20.15422 -18.63502 -17.36317 -16.69327 -16.26304 -15.65436 -15.10232 -14.77074 -14.58062 -14.13665 -13.83826 -13.54307 -13.11878 -12.95591 -12.69221 -12.46310 -12.18075 -11.97972 -11.68625 -11.59100 -11.47687 -10.94421 -10.88131 -10.86208 -10.67773 -10.56750 -10.14124 -9.91847 -9.87242 -9.43163 -9.01445 -8.97381 -8.71842 -8.27042 -7.65798 -5.97770 -3.98862 2.48243 2.85412 3.33338 3.40600 3.43999 3.57161 4.36176 4.41970 4.52143 4.58588 4.62352 4.85611 5.08521 5.23412 5.24046 5.34549 5.44303 5.58470 5.64073 5.68050 5.72028 5.78427 6.05086 6.08209 6.15833 6.25977 6.32600 6.43644 6.54181 6.68153 6.73454 6.97126 7.20180 7.27031 7.33768 7.66423 7.77722 7.81376 8.04255 8.09608 8.14602 8.51309 9.05650 9.64020 11.11504 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046216 B = 0.003181 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.708872 B = 8800.365612 C = 9128.205414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.042 0.958 11 C -0.106 4.106 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.540 5.540 15 C 0.071 3.929 16 C -0.136 4.136 17 C 0.520 3.480 18 O -0.537 6.537 19 N -0.708 5.708 20 C 0.081 3.919 21 C -0.191 4.191 22 C -0.196 4.196 23 C 0.069 3.931 24 H 0.259 0.741 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.402 0.598 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 -21.418 -1.254 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.060 0.940 11 C -0.144 4.144 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.265 5.265 15 C -0.058 4.058 16 C -0.176 4.176 17 C 0.307 3.693 18 O -0.413 6.413 19 N -0.359 5.359 20 C -0.026 4.026 21 C -0.229 4.229 22 C -0.234 4.234 23 C -0.058 4.058 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.236 0.764 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.376 -21.140 -0.778 21.158 hybrid contribution 0.601 0.743 -0.729 1.202 sum 0.978 -20.397 -1.507 20.476 Atomic orbital electron populations 1.69982 1.05877 1.26375 1.50268 1.24924 0.94739 0.98915 0.95071 0.86677 0.80101 0.83898 0.77917 1.20797 1.21327 1.19912 1.21136 0.94040 0.91037 1.49286 0.92805 1.18682 0.94290 0.90324 0.93267 0.93997 1.21604 0.99037 0.94505 0.99295 1.21656 0.98133 0.96295 0.99380 1.22082 0.97435 0.98564 0.88786 1.62000 1.37593 1.02475 1.24390 1.21742 0.93325 0.88807 1.01912 1.21694 0.99283 0.92366 1.04294 1.20927 0.88911 0.83915 0.75509 1.90700 1.16693 1.85406 1.48505 1.45468 1.11898 1.05883 1.72675 1.21589 0.96841 0.81134 1.03000 1.23373 1.01577 1.01362 0.96602 1.23424 1.04014 1.01665 0.94342 1.22306 0.95911 0.88253 0.99293 0.93109 0.90931 0.94885 0.91927 0.93545 0.95841 0.92357 0.90359 0.94771 0.88849 0.87830 0.76353 0.84531 0.88432 0.87922 0.88066 0.88510 0.92034 0.96275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 12.19 55.43 0.68 -24.94 16 2 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 3 Si 0.89 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.32 8.48 -34.44 -0.29 -14.61 16 8 H 0.05 1.48 7.77 -52.49 -0.41 1.08 16 9 C 0.05 1.34 2.13 -91.69 -0.19 1.14 16 10 H 0.04 1.17 8.09 -51.93 -0.42 0.75 16 11 C -0.11 -2.48 5.09 -26.61 -0.14 -2.61 16 12 C -0.12 -2.21 6.09 -26.64 -0.16 -2.37 16 13 C 0.06 1.01 5.29 -3.83 -0.02 0.99 16 14 N -0.54 -9.92 4.66 -234.66 -1.09 -11.02 16 15 C 0.07 1.13 4.25 -3.82 -0.02 1.11 16 16 C -0.14 -1.63 5.63 -27.88 -0.16 -1.79 16 17 C 0.52 6.53 7.83 -10.99 -0.09 6.45 16 18 O -0.54 -8.92 15.55 5.56 0.09 -8.83 16 19 N -0.71 -6.51 5.57 -53.81 -0.30 -6.81 16 20 C 0.08 0.71 6.43 -67.93 -0.44 0.27 16 21 C -0.19 -1.20 10.45 -26.73 -0.28 -1.48 16 22 C -0.20 -1.30 10.46 -26.73 -0.28 -1.58 16 23 C 0.07 1.50 4.69 -3.83 -0.02 1.48 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.07 1.88 6.99 -51.93 -0.36 1.51 16 26 H 0.03 0.77 8.14 -51.92 -0.42 0.34 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.82 6.21 -51.93 -0.32 0.50 16 31 H 0.08 1.32 7.95 -51.93 -0.41 0.91 16 32 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.09 0.97 6.43 -51.93 -0.33 0.64 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 2.57 8.83 -40.82 -0.36 2.21 16 36 H 0.14 1.42 7.40 -51.93 -0.38 1.04 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.34 8.02 -51.93 -0.42 0.93 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -31.16 336.36 -9.96 -41.11 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.20 Total: 0.24 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.17 Total: -11.27 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.72 Total: -42.77 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.16 -9.96 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397744236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.738 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds