Wall clock time and date at job start Mon Mar 30 2020 05:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47025 * 274.98423 * 3 2 1 5 5 H 1.48498 * 109.47370 * 34.98865 * 3 2 1 6 6 H 1.48504 * 109.47008 * 154.98829 * 3 2 1 7 7 C 1.37874 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00224 * 189.55998 * 7 2 1 9 9 C 1.50705 * 119.99685 * 9.56369 * 7 2 1 10 10 H 1.08999 * 109.50300 * 305.50640 * 9 7 2 11 11 C 1.53118 * 109.50241 * 65.62444 * 9 7 2 12 12 C 1.53126 * 109.15984 * 177.59288 * 11 9 7 13 13 C 1.53042 * 109.27747 * 302.35074 * 12 11 9 14 14 N 1.46842 * 109.52523 * 59.17471 * 13 12 11 15 15 C 1.46902 * 110.99980 * 174.15997 * 14 13 12 16 16 C 1.53000 * 109.47131 * 294.21237 * 15 14 13 17 17 C 1.50702 * 109.46873 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00451 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99813 * 179.97438 * 17 16 15 20 20 C 1.46496 * 120.00398 * 180.02562 * 19 17 16 21 21 C 1.52997 * 117.50358 * 155.00025 * 20 19 17 22 22 C 1.52996 * 60.00105 * 107.49190 * 21 20 19 23 23 C 1.46850 * 111.20185 * 298.25821 * 14 13 12 24 24 H 0.96997 * 119.99578 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.52707 * 297.49793 * 11 9 7 26 26 H 1.09009 * 109.52251 * 57.62901 * 11 9 7 27 27 H 1.08998 * 109.49684 * 62.28565 * 12 11 9 28 28 H 1.08994 * 109.50616 * 182.36875 * 12 11 9 29 29 H 1.09009 * 109.45813 * 299.15887 * 13 12 11 30 30 H 1.09003 * 109.45852 * 179.19659 * 13 12 11 31 31 H 1.09002 * 109.47092 * 174.20905 * 15 14 13 32 32 H 1.09005 * 109.46768 * 54.20979 * 15 14 13 33 33 H 1.08999 * 109.46918 * 59.99723 * 16 15 14 34 34 H 1.08997 * 109.47189 * 299.99899 * 16 15 14 35 35 H 0.97005 * 120.00053 * 0.02562 * 19 17 16 36 36 H 1.09005 * 115.55721 * 9.30926 * 20 19 17 37 37 H 1.09004 * 117.49945 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.49797 * 214.98165 * 21 20 19 39 39 H 1.08998 * 117.49968 * 107.48825 * 22 21 20 40 40 H 1.09001 * 117.49711 * 252.49176 * 22 21 20 41 41 H 1.08998 * 109.46263 * 181.75835 * 23 14 13 42 42 H 1.09005 * 109.46095 * 301.74099 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3913 2.1073 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5955 1.4121 0.5920 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2005 0.1559 9 6 1.2667 -2.4902 -0.2157 10 1 0.4550 -2.5718 0.5071 11 6 0.6933 -2.5212 -1.6352 12 6 -0.0026 -3.8654 -1.8667 13 6 0.9995 -4.9993 -1.6379 14 7 1.5184 -4.9262 -0.2662 15 6 2.3777 -6.0793 0.0337 16 6 1.5374 -7.3578 0.0241 17 6 2.4191 -8.5408 0.3311 18 8 3.6030 -8.3774 0.5377 19 7 1.8919 -9.7803 0.3771 20 6 2.7488 -10.9302 0.6760 21 6 2.0845 -12.1675 1.2833 22 6 2.5605 -12.1907 -0.1705 23 6 2.2320 -3.6638 -0.0348 24 1 -0.4849 0.8401 -0.0004 25 1 -0.0275 -1.7125 -1.7547 26 1 1.5009 -2.3991 -2.3570 27 1 -0.8346 -3.9690 -1.1702 28 1 -0.3765 -3.9103 -2.8895 29 1 1.8244 -4.9028 -2.3439 30 1 0.5033 -5.9582 -1.7880 31 1 2.8303 -5.9493 1.0168 32 1 3.1615 -6.1541 -0.7201 33 1 1.0849 -7.4878 -0.9590 34 1 0.7536 -7.2831 0.7779 35 1 0.9449 -9.9110 0.2122 36 1 3.7605 -10.6903 1.0034 37 1 1.0097 -12.1260 1.4601 38 1 2.6591 -12.7415 2.0103 39 1 3.4482 -12.7800 -0.4001 40 1 1.7989 -12.1647 -0.9499 41 1 2.6312 -3.6528 0.9794 42 1 3.0510 -3.5736 -0.7485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397744236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:21 Heat of formation + Delta-G solvation = -44.460069 kcal Electronic energy + Delta-G solvation = -20088.368940 eV Core-core repulsion = 17067.455989 eV Total energy + Delta-G solvation = -3020.912951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96226 -39.73775 -38.04869 -35.84183 -34.11650 -33.71887 -31.80098 -30.90071 -26.89699 -25.93014 -23.50997 -23.28666 -23.25049 -22.12633 -21.28199 -20.37814 -18.54627 -18.15250 -17.43569 -16.74677 -16.70552 -16.18586 -15.69343 -15.41631 -15.12113 -14.98712 -14.65452 -14.28087 -14.03767 -13.87136 -13.64264 -13.20641 -12.96202 -12.80709 -12.61179 -12.51808 -12.46704 -12.32904 -12.04377 -11.82134 -11.68640 -11.46649 -11.35997 -10.96026 -10.77793 -10.66053 -10.40516 -9.73957 -9.17475 -8.12620 -6.20877 1.39942 1.41159 1.51467 1.55425 2.04695 2.43082 2.99957 3.11060 3.17511 3.78097 3.83789 3.97576 4.06620 4.09137 4.15344 4.20976 4.33249 4.46992 4.58177 4.63873 4.72881 4.77679 4.85289 4.88554 4.92051 4.97501 5.03309 5.04342 5.14151 5.17929 5.22005 5.42916 5.46982 5.53248 5.64278 5.94736 6.06091 6.15237 6.32043 6.46115 6.51969 6.91512 7.23602 7.45390 8.96188 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046216 B = 0.003181 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.708872 B = 8800.365612 C = 9128.205414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.047 0.953 9 C 0.053 3.947 10 H 0.005 0.995 11 C -0.101 4.101 12 C -0.109 4.109 13 C 0.060 3.940 14 N -0.542 5.542 15 C 0.074 3.926 16 C -0.124 4.124 17 C 0.519 3.481 18 O -0.587 6.587 19 N -0.690 5.690 20 C 0.047 3.953 21 C -0.172 4.172 22 C -0.184 4.184 23 C 0.081 3.919 24 H 0.261 0.739 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.418 0.582 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -23.462 -2.092 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.578 4.578 8 H 0.066 0.934 9 C 0.034 3.966 10 H 0.024 0.976 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.067 4.067 14 N -0.267 5.267 15 C -0.054 4.054 16 C -0.164 4.164 17 C 0.307 3.693 18 O -0.467 6.467 19 N -0.341 5.341 20 C -0.059 4.059 21 C -0.211 4.211 22 C -0.222 4.222 23 C -0.047 4.047 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.256 0.744 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.449 -23.234 -1.622 23.295 hybrid contribution 0.838 1.318 -0.440 1.623 sum 0.389 -21.916 -2.062 22.016 Atomic orbital electron populations 1.70094 1.07176 1.27228 1.50875 1.25672 0.95564 1.02184 0.94694 0.85681 0.78893 0.79780 0.78151 1.20082 1.20763 1.19477 1.21503 0.94013 0.92741 1.49544 0.93435 1.18583 0.93627 0.90930 0.93449 0.97642 1.21441 0.98275 0.96420 0.97808 1.21577 0.97977 0.94191 1.00955 1.22170 0.97086 0.99792 0.87678 1.61952 1.37431 1.01644 1.25661 1.21692 0.93514 0.89610 1.00604 1.21574 0.98594 0.89907 1.06300 1.20984 0.88189 0.84992 0.75107 1.90690 1.18741 1.86162 1.51143 1.45275 1.12758 1.04996 1.71084 1.21627 0.96368 0.81796 1.06082 1.23461 1.02286 0.98694 0.96613 1.23494 1.04490 0.99360 0.94868 1.21978 0.94956 0.89198 0.98546 0.92980 0.94129 0.95441 0.92495 0.90699 0.95900 0.87967 0.92038 0.95765 0.86261 0.86236 0.74406 0.86973 0.87015 0.87123 0.87511 0.87432 0.93052 0.97003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.12 12.19 21.45 0.26 -53.86 16 2 C 0.02 1.03 5.22 84.65 0.44 1.47 16 3 Si 0.95 44.63 29.55 68.60 2.03 46.65 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.81 8.48 25.60 0.22 -30.59 16 8 H 0.05 2.70 7.77 -2.91 -0.02 2.67 16 9 C 0.05 2.75 2.13 -11.49 -0.02 2.73 16 10 H 0.01 0.31 8.09 -2.39 -0.02 0.30 16 11 C -0.10 -4.79 5.09 30.68 0.16 -4.63 16 12 C -0.11 -3.97 6.09 30.65 0.19 -3.78 16 13 C 0.06 1.90 5.29 86.33 0.46 2.35 16 14 N -0.54 -19.46 4.66 -896.32 -4.17 -23.63 16 15 C 0.07 2.30 4.25 86.30 0.37 2.67 16 16 C -0.12 -2.65 5.63 29.85 0.17 -2.49 16 17 C 0.52 12.35 7.83 87.66 0.69 13.03 16 18 O -0.59 -19.67 15.55 -3.03 -0.05 -19.72 16 19 N -0.69 -11.19 5.57 -442.54 -2.46 -13.65 16 20 C 0.05 0.76 6.43 44.99 0.29 1.05 16 21 C -0.17 -1.70 10.45 30.59 0.32 -1.38 16 22 C -0.18 -1.96 10.46 30.59 0.32 -1.64 16 23 C 0.08 3.60 4.69 86.33 0.40 4.00 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H 0.04 2.15 6.99 -2.39 -0.02 2.13 16 26 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 29 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.10 2.39 6.21 -2.39 -0.01 2.37 16 31 H 0.06 2.10 7.95 -2.39 -0.02 2.08 16 32 H 0.02 0.80 8.08 -2.38 -0.02 0.78 16 33 H 0.12 1.95 6.43 -2.39 -0.02 1.94 16 34 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.42 3.93 8.83 -92.70 -0.82 3.11 16 36 H 0.11 2.38 7.40 -2.38 -0.02 2.36 16 37 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 2.33 8.02 -2.39 -0.02 2.31 16 42 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -70.33 336.36 -0.23 -70.56 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.17 Total: 10.86 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 3.99 Total: -17.22 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -6.38 Total: -91.14 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.05 Total: -19.72 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.33 -0.23 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397744236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.101 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds