Wall clock time and date at job start Mon Mar 30 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99873 * 2 1 4 4 H 1.48503 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47171 * 300.00055 * 3 2 1 6 6 H 1.48502 * 109.47222 * 60.00168 * 3 2 1 7 7 C 1.37880 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99978 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.53482 * 300.10492 * 9 7 2 11 11 C 1.53125 * 109.50031 * 60.20022 * 9 7 2 12 12 C 1.53117 * 109.15947 * 177.59489 * 11 9 7 13 13 C 1.53038 * 109.27728 * 302.34562 * 12 11 9 14 14 N 1.46844 * 109.52504 * 59.18002 * 13 12 11 15 15 C 1.46896 * 110.99930 * 174.15760 * 14 13 12 16 16 H 1.09007 * 109.63095 * 68.60166 * 15 14 13 17 17 C 1.53062 * 109.63255 * 188.99298 * 15 14 13 18 18 C 1.51788 * 110.74297 * 34.79088 * 17 15 14 19 19 C 1.51784 * 113.81237 * 66.80770 * 18 17 15 20 20 C 1.52984 * 110.87870 * 292.99430 * 19 18 17 21 21 N 1.47203 * 108.66233 * 86.46707 * 20 19 18 22 22 C 1.33363 * 120.42788 * 288.04074 * 21 20 19 23 23 O 1.21277 * 119.89135 * 180.28803 * 22 21 20 24 24 C 1.46847 * 111.19644 * 298.25841 * 14 13 12 25 25 H 0.97001 * 120.00213 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.52231 * 297.49769 * 11 9 7 27 27 H 1.08993 * 109.52188 * 57.68652 * 11 9 7 28 28 H 1.09002 * 109.50520 * 62.28712 * 12 11 9 29 29 H 1.08999 * 109.50581 * 182.36264 * 12 11 9 30 30 H 1.09009 * 109.46099 * 179.19621 * 13 12 11 31 31 H 1.08998 * 109.46307 * 299.16310 * 13 12 11 32 32 H 1.09001 * 109.22198 * 155.11574 * 17 15 14 33 33 H 1.09003 * 109.22501 * 274.46239 * 17 15 14 34 34 H 1.08999 * 108.61920 * 187.92452 * 18 17 15 35 35 H 1.08999 * 108.61499 * 305.82710 * 18 17 15 36 36 H 1.08994 * 109.19586 * 53.35385 * 19 18 17 37 37 H 1.09000 * 109.19592 * 172.68920 * 19 18 17 38 38 H 1.08998 * 109.60894 * 206.21765 * 20 19 18 39 39 H 1.09000 * 109.61128 * 326.54683 * 20 19 18 40 40 H 0.97003 * 119.78460 * 108.04232 * 21 20 19 41 41 H 1.08997 * 109.46403 * 301.72583 * 24 14 13 42 42 H 1.09004 * 109.46058 * 181.76042 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6230 -2.5574 0.8884 11 6 0.3738 -2.5829 -1.2528 12 6 -0.3418 -3.9364 -1.2754 13 6 0.6982 -5.0584 -1.2390 14 7 1.5113 -4.9348 -0.0225 15 6 2.4283 -6.0739 0.1158 16 1 3.1906 -6.0270 -0.6620 17 6 3.0957 -6.0327 1.4927 18 6 2.1366 -5.4948 2.5390 19 6 0.9538 -6.4060 2.8123 20 6 0.0357 -6.4885 1.5914 21 7 0.5332 -7.5480 0.6987 22 6 1.6528 -7.3690 -0.0034 23 8 2.0510 -8.2463 -0.7400 24 6 2.2449 -3.6628 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 -0.3643 -1.7809 -1.2348 27 1 0.9972 -2.4855 -2.1414 28 1 -0.9950 -4.0173 -0.4065 29 1 -0.9355 -4.0190 -2.1858 30 1 0.1915 -6.0236 -1.2407 31 1 1.3423 -4.9852 -2.1153 32 1 3.4039 -7.0401 1.7725 33 1 3.9743 -5.3892 1.4466 34 1 2.6842 -5.3470 3.4698 35 1 1.7590 -4.5296 2.2015 36 1 1.3188 -7.4040 3.0544 37 1 0.3889 -6.0158 3.6589 38 1 -0.9785 -6.7268 1.9119 39 1 0.0383 -5.5333 1.0664 40 1 0.0435 -8.3817 0.6206 41 1 2.8817 -3.5961 -0.8833 42 1 2.8616 -3.6143 0.8963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397827809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:28 Heat of formation + Delta-G solvation = -37.189473 kcal Electronic energy + Delta-G solvation = -22249.174734 eV Core-core repulsion = 19228.577060 eV Total energy + Delta-G solvation = -3020.597674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61476 -37.87249 -36.17058 -34.09610 -33.17947 -31.64721 -29.95340 -29.29830 -26.01997 -25.00387 -23.86496 -22.37756 -21.45197 -20.37941 -19.17248 -18.64196 -17.09584 -16.73518 -16.15456 -15.17418 -14.80252 -14.68521 -14.26565 -13.82087 -13.68848 -13.50122 -13.14783 -12.86472 -12.80301 -12.39110 -12.12405 -11.96378 -11.63949 -11.37514 -11.00304 -10.77642 -10.72836 -10.67718 -10.46081 -10.38492 -10.14685 -9.91544 -9.66850 -9.46535 -9.07946 -8.87540 -8.75210 -8.35278 -7.73572 -6.02594 -4.08527 2.80556 3.27087 3.35878 3.39092 3.54575 4.23845 4.44894 4.65036 5.02302 5.11585 5.18530 5.28140 5.41379 5.46977 5.57134 5.71329 5.83742 5.87295 5.90796 5.99043 6.14412 6.17446 6.23878 6.29429 6.31385 6.42787 6.53911 6.62007 6.66384 6.77981 6.86849 7.00107 7.13707 7.28657 7.44935 7.49213 7.61314 7.72143 7.99761 8.10869 8.41846 8.44188 8.95425 9.56432 11.03327 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027969 B = 0.005977 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.864663 B = 4683.128554 C = 4917.933902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.058 3.942 10 H 0.036 0.964 11 C -0.112 4.112 12 C -0.114 4.114 13 C 0.051 3.949 14 N -0.519 5.519 15 C 0.063 3.937 16 H 0.069 0.931 17 C -0.103 4.103 18 C -0.121 4.121 19 C -0.127 4.127 20 C 0.083 3.917 21 N -0.713 5.713 22 C 0.532 3.468 23 O -0.568 6.568 24 C 0.060 3.940 25 H 0.259 0.741 26 H 0.092 0.908 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.392 0.608 41 H 0.023 0.977 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -10.727 4.015 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.039 3.961 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.152 4.152 13 C -0.076 4.076 14 N -0.245 5.245 15 C -0.049 4.049 16 H 0.087 0.913 17 C -0.141 4.141 18 C -0.159 4.159 19 C -0.165 4.165 20 C -0.040 4.040 21 N -0.364 5.364 22 C 0.318 3.682 23 O -0.446 6.446 24 C -0.066 4.066 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.152 0.848 40 H 0.226 0.774 41 H 0.041 0.959 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.445 -10.866 4.056 11.607 hybrid contribution 0.824 0.545 -0.696 1.208 sum 0.379 -10.321 3.360 10.861 Atomic orbital electron populations 1.69886 1.05811 1.26267 1.50656 1.24910 0.94807 0.98925 0.95067 0.86594 0.80164 0.84012 0.77549 1.19871 1.21125 1.21056 1.21164 0.92887 0.90582 1.50718 0.92771 1.18656 0.92473 0.90157 0.94801 0.94639 1.21682 1.00106 0.94605 0.98643 1.21674 0.96932 0.96268 1.00350 1.22191 0.95938 0.99047 0.90464 1.62328 1.23104 1.01950 1.37111 1.22083 0.94374 0.89157 0.99276 0.91272 1.21278 0.98540 1.01324 0.92957 1.21100 0.95666 1.01753 0.97340 1.21631 0.97361 0.99622 0.97887 1.22480 0.95739 0.94715 0.91109 1.45866 1.25706 1.19517 1.45263 1.20375 0.80779 0.88781 0.78291 1.90713 1.68891 1.45308 1.39728 1.22474 0.96816 0.87778 0.99512 0.93093 0.89008 0.95066 0.92048 0.93379 0.92216 0.95303 0.92180 0.90943 0.92947 0.88696 0.92872 0.91227 0.91310 0.84768 0.77351 0.95863 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 11.36 55.43 0.63 -23.52 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.29 8.56 -34.44 -0.29 -13.59 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.06 1.32 2.26 -91.69 -0.21 1.11 16 10 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.11 -2.48 5.03 -26.61 -0.13 -2.62 16 12 C -0.11 -2.06 6.07 -26.65 -0.16 -2.23 16 13 C 0.05 0.87 4.38 -3.83 -0.02 0.85 16 14 N -0.52 -8.47 0.90 -227.61 -0.21 -8.68 16 15 C 0.06 0.97 2.23 -68.48 -0.15 0.82 16 16 H 0.07 1.14 8.13 -51.92 -0.42 0.72 16 17 C -0.10 -1.38 4.73 -27.31 -0.13 -1.51 16 18 C -0.12 -1.56 5.00 -27.96 -0.14 -1.70 16 19 C -0.13 -1.44 5.74 -27.36 -0.16 -1.60 16 20 C 0.08 0.99 6.29 -3.67 -0.02 0.97 16 21 N -0.71 -9.17 4.84 -59.90 -0.29 -9.46 16 22 C 0.53 8.43 5.01 -11.26 -0.06 8.38 16 23 O -0.57 -10.93 17.92 5.56 0.10 -10.83 16 24 C 0.06 1.15 3.76 -3.84 -0.01 1.14 16 25 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 26 H 0.09 2.30 6.16 -51.93 -0.32 1.98 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.09 7.97 -51.93 -0.41 0.68 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.96 6.27 -51.92 -0.33 0.64 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.77 7.86 -51.93 -0.41 0.37 16 33 H 0.07 0.94 7.73 -51.93 -0.40 0.54 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.45 5.36 -51.93 -0.28 1.17 16 36 H 0.05 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.13 1.93 4.28 -51.93 -0.22 1.70 16 40 H 0.39 4.41 8.91 -40.82 -0.36 4.04 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.27 5.88 -51.93 -0.31 0.96 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -28.02 308.02 -8.53 -36.54 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.80 Total: 4.14 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.58 Total: -8.38 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.13 Total: -41.65 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.10 Total: -10.83 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.02 -8.53 -36.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397827809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.645 kcal (2) G-P(sol) polarization free energy of solvation -28.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds