Wall clock time and date at job start Mon Mar 30 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99873 * 2 1 4 4 H 1.48503 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47171 * 300.00055 * 3 2 1 6 6 H 1.48502 * 109.47222 * 60.00168 * 3 2 1 7 7 C 1.37880 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99978 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.53482 * 300.10492 * 9 7 2 11 11 C 1.53125 * 109.50031 * 60.20022 * 9 7 2 12 12 C 1.53117 * 109.15947 * 177.59489 * 11 9 7 13 13 C 1.53038 * 109.27728 * 302.34562 * 12 11 9 14 14 N 1.46844 * 109.52504 * 59.18002 * 13 12 11 15 15 C 1.46896 * 110.99930 * 174.15760 * 14 13 12 16 16 H 1.09007 * 109.63095 * 68.60166 * 15 14 13 17 17 C 1.53062 * 109.63255 * 188.99298 * 15 14 13 18 18 C 1.51788 * 110.74297 * 34.79088 * 17 15 14 19 19 C 1.51784 * 113.81237 * 66.80770 * 18 17 15 20 20 C 1.52984 * 110.87870 * 292.99430 * 19 18 17 21 21 N 1.47203 * 108.66233 * 86.46707 * 20 19 18 22 22 C 1.33363 * 120.42788 * 288.04074 * 21 20 19 23 23 O 1.21277 * 119.89135 * 180.28803 * 22 21 20 24 24 C 1.46847 * 111.19644 * 298.25841 * 14 13 12 25 25 H 0.97001 * 120.00213 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.52231 * 297.49769 * 11 9 7 27 27 H 1.08993 * 109.52188 * 57.68652 * 11 9 7 28 28 H 1.09002 * 109.50520 * 62.28712 * 12 11 9 29 29 H 1.08999 * 109.50581 * 182.36264 * 12 11 9 30 30 H 1.09009 * 109.46099 * 179.19621 * 13 12 11 31 31 H 1.08998 * 109.46307 * 299.16310 * 13 12 11 32 32 H 1.09001 * 109.22198 * 155.11574 * 17 15 14 33 33 H 1.09003 * 109.22501 * 274.46239 * 17 15 14 34 34 H 1.08999 * 108.61920 * 187.92452 * 18 17 15 35 35 H 1.08999 * 108.61499 * 305.82710 * 18 17 15 36 36 H 1.08994 * 109.19586 * 53.35385 * 19 18 17 37 37 H 1.09000 * 109.19592 * 172.68920 * 19 18 17 38 38 H 1.08998 * 109.60894 * 206.21765 * 20 19 18 39 39 H 1.09000 * 109.61128 * 326.54683 * 20 19 18 40 40 H 0.97003 * 119.78460 * 108.04232 * 21 20 19 41 41 H 1.08997 * 109.46403 * 301.72583 * 24 14 13 42 42 H 1.09004 * 109.46058 * 181.76042 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6230 -2.5574 0.8884 11 6 0.3738 -2.5829 -1.2528 12 6 -0.3418 -3.9364 -1.2754 13 6 0.6982 -5.0584 -1.2390 14 7 1.5113 -4.9348 -0.0225 15 6 2.4283 -6.0739 0.1158 16 1 3.1906 -6.0270 -0.6620 17 6 3.0957 -6.0327 1.4927 18 6 2.1366 -5.4948 2.5390 19 6 0.9538 -6.4060 2.8123 20 6 0.0357 -6.4885 1.5914 21 7 0.5332 -7.5480 0.6987 22 6 1.6528 -7.3690 -0.0034 23 8 2.0510 -8.2463 -0.7400 24 6 2.2449 -3.6628 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 -0.3643 -1.7809 -1.2348 27 1 0.9972 -2.4855 -2.1414 28 1 -0.9950 -4.0173 -0.4065 29 1 -0.9355 -4.0190 -2.1858 30 1 0.1915 -6.0236 -1.2407 31 1 1.3423 -4.9852 -2.1153 32 1 3.4039 -7.0401 1.7725 33 1 3.9743 -5.3892 1.4466 34 1 2.6842 -5.3470 3.4698 35 1 1.7590 -4.5296 2.2015 36 1 1.3188 -7.4040 3.0544 37 1 0.3889 -6.0158 3.6589 38 1 -0.9785 -6.7268 1.9119 39 1 0.0383 -5.5333 1.0664 40 1 0.0435 -8.3817 0.6206 41 1 2.8817 -3.5961 -0.8833 42 1 2.8616 -3.6143 0.8963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397827809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:28 Heat of formation + Delta-G solvation = -53.241177 kcal Electronic energy + Delta-G solvation = -22249.870789 eV Core-core repulsion = 19228.577060 eV Total energy + Delta-G solvation = -3021.293728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87709 -39.33740 -37.43073 -35.53369 -34.69475 -33.11478 -31.65442 -30.57138 -27.36094 -26.74059 -25.03177 -23.89936 -23.04386 -21.48295 -20.39911 -20.26541 -18.52694 -18.11463 -17.72646 -16.55566 -16.43017 -16.03252 -15.67437 -15.21909 -15.04371 -14.74150 -14.48383 -14.42837 -14.15811 -13.95333 -13.50921 -13.36791 -12.97920 -12.83717 -12.57348 -12.53433 -12.50465 -11.84646 -11.80139 -11.75941 -11.46731 -11.41075 -11.34665 -10.98070 -10.68807 -10.59169 -10.33706 -10.00515 -9.12044 -8.04332 -6.16252 1.42127 1.45723 1.53764 1.55668 2.43327 2.46319 2.90811 3.24019 3.48614 3.90379 4.04504 4.08526 4.17054 4.22710 4.38871 4.43902 4.48046 4.60605 4.70635 4.77453 4.81732 4.90077 4.93651 5.01355 5.06688 5.17532 5.20523 5.27423 5.33191 5.34920 5.52125 5.54678 5.68526 5.74585 5.90599 5.94098 6.12638 6.14901 6.22959 6.32694 6.48464 6.95879 7.27185 7.51360 9.00152 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027969 B = 0.005977 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.864663 B = 4683.128554 C = 4917.933902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.049 0.951 9 C 0.060 3.940 10 H 0.013 0.987 11 C -0.106 4.106 12 C -0.103 4.103 13 C 0.057 3.943 14 N -0.504 5.504 15 C 0.062 3.938 16 H 0.057 0.943 17 C -0.100 4.100 18 C -0.119 4.119 19 C -0.123 4.123 20 C 0.081 3.919 21 N -0.697 5.697 22 C 0.533 3.467 23 O -0.604 6.604 24 C 0.076 3.924 25 H 0.259 0.741 26 H 0.061 0.939 27 H 0.016 0.984 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.403 0.597 41 H 0.009 0.991 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -11.732 5.042 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.042 3.958 10 H 0.032 0.968 11 C -0.145 4.145 12 C -0.141 4.141 13 C -0.071 4.071 14 N -0.230 5.230 15 C -0.049 4.049 16 H 0.075 0.925 17 C -0.138 4.138 18 C -0.157 4.157 19 C -0.161 4.161 20 C -0.041 4.041 21 N -0.347 5.347 22 C 0.319 3.681 23 O -0.486 6.486 24 C -0.050 4.050 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.240 0.760 41 H 0.028 0.972 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.619 -11.876 5.108 12.943 hybrid contribution 0.847 0.862 -0.995 1.565 sum 0.228 -11.015 4.113 11.760 Atomic orbital electron populations 1.70004 1.06882 1.26843 1.51364 1.25583 0.95558 1.01826 0.94999 0.85698 0.79161 0.80489 0.77426 1.19445 1.21119 1.20648 1.21533 0.92948 0.92209 1.50404 0.93260 1.18533 0.92727 0.90595 0.93992 0.96841 1.21503 0.99234 0.96117 0.97601 1.21542 0.97010 0.94116 1.01437 1.22133 0.95561 0.99167 0.90226 1.62337 1.22791 1.01199 1.36655 1.22109 0.93975 0.88590 1.00276 0.92549 1.21285 0.98622 1.02047 0.91819 1.21076 0.96272 1.00802 0.97534 1.21606 0.96708 0.99754 0.98037 1.22527 0.97513 0.93307 0.90793 1.45808 1.24499 1.20177 1.44175 1.20317 0.81356 0.88237 0.78234 1.90703 1.70032 1.46375 1.41526 1.22148 0.95733 0.87962 0.99202 0.93155 0.92046 0.96559 0.91527 0.91757 0.90687 0.96381 0.91185 0.90723 0.91621 0.91178 0.91975 0.89622 0.88353 0.86967 0.76016 0.97228 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.41 11.36 21.45 0.24 -50.17 16 2 C 0.02 1.03 5.30 84.66 0.45 1.48 16 3 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.53 -27.92 8.56 25.60 0.22 -27.70 16 8 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 9 C 0.06 2.80 2.26 -11.49 -0.03 2.77 16 10 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 11 C -0.11 -4.79 5.03 30.68 0.15 -4.64 16 12 C -0.10 -3.66 6.07 30.65 0.19 -3.47 16 13 C 0.06 1.88 4.38 86.33 0.38 2.26 16 14 N -0.50 -16.12 0.90 -874.04 -0.79 -16.91 16 15 C 0.06 1.85 2.23 44.42 0.10 1.95 16 16 H 0.06 1.85 8.13 -2.38 -0.02 1.83 16 17 C -0.10 -2.51 4.73 30.22 0.14 -2.37 16 18 C -0.12 -2.83 5.00 29.80 0.15 -2.68 16 19 C -0.12 -2.42 5.74 30.19 0.17 -2.25 16 20 C 0.08 1.70 6.29 86.24 0.54 2.25 16 21 N -0.70 -16.07 4.84 -462.60 -2.24 -18.31 16 22 C 0.53 16.00 5.01 88.11 0.44 16.44 16 23 O -0.60 -22.59 17.92 -3.02 -0.05 -22.64 16 24 C 0.08 2.93 3.76 86.32 0.32 3.25 16 25 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 26 H 0.06 3.15 6.16 -2.38 -0.01 3.14 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 2.30 7.97 -2.39 -0.02 2.29 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.07 2.28 6.27 -2.38 -0.01 2.26 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.65 7.86 -2.39 -0.02 1.63 16 33 H 0.07 1.84 7.73 -2.39 -0.02 1.82 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 2.05 5.36 -2.39 -0.01 2.04 16 36 H 0.06 1.15 8.05 -2.39 -0.02 1.13 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 2.98 4.28 -2.39 -0.01 2.97 16 40 H 0.40 7.86 8.91 -92.71 -0.83 7.04 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.08 2.79 5.88 -2.39 -0.01 2.77 16 Total: -1.00 -60.51 308.02 2.60 -57.90 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.18 Total: 18.41 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 3.23 Total: -12.71 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -2.79 Total: -85.39 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -60.51 2.60 -57.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397827809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.661 kcal (2) G-P(sol) polarization free energy of solvation -60.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds