Wall clock time and date at job start Mon Mar 30 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99605 * 2 1 4 4 H 1.48504 * 109.46797 * 239.99950 * 3 2 1 5 5 H 1.48492 * 109.47550 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47363 * 120.00360 * 3 2 1 7 7 C 1.37871 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00021 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.50401 * 60.00412 * 9 7 2 11 11 C 1.53115 * 109.53904 * 299.90426 * 9 7 2 12 12 C 1.53125 * 109.16423 * 182.38505 * 11 9 7 13 13 C 1.53030 * 109.27626 * 57.65164 * 12 11 9 14 14 N 1.46842 * 109.53004 * 300.82381 * 13 12 11 15 15 C 1.46899 * 111.00380 * 185.83903 * 14 13 12 16 16 H 1.09001 * 109.62936 * 61.68842 * 15 14 13 17 17 C 1.53065 * 109.63101 * 182.28347 * 15 14 13 18 18 C 1.51875 * 110.73606 * 204.60081 * 17 15 14 19 19 C 1.51777 * 113.82951 * 293.23224 * 18 17 15 20 20 C 1.52985 * 110.88022 * 66.96416 * 19 18 17 21 21 N 1.47199 * 108.66462 * 273.53772 * 20 19 18 22 22 C 1.33365 * 120.42995 * 71.98902 * 21 20 19 23 23 O 1.21284 * 119.89231 * 179.67882 * 22 21 20 24 24 C 1.46849 * 111.19796 * 61.74083 * 14 13 12 25 25 H 0.96997 * 119.99868 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.52247 * 302.29033 * 11 9 7 27 27 H 1.09001 * 109.52296 * 62.47944 * 11 9 7 28 28 H 1.09004 * 109.50156 * 297.71555 * 12 11 9 29 29 H 1.08997 * 109.50326 * 177.59621 * 12 11 9 30 30 H 1.09002 * 109.46363 * 180.80629 * 13 12 11 31 31 H 1.09000 * 109.45664 * 60.83768 * 13 12 11 32 32 H 1.09000 * 109.22612 * 324.95034 * 17 15 14 33 33 H 1.09001 * 109.21905 * 84.30150 * 17 15 14 34 34 H 1.09001 * 108.63066 * 172.08276 * 18 17 15 35 35 H 1.08999 * 108.57857 * 54.33775 * 18 17 15 36 36 H 1.09003 * 109.19473 * 306.60232 * 19 18 17 37 37 H 1.09001 * 109.15776 * 187.30358 * 19 18 17 38 38 H 1.09002 * 109.60581 * 153.78738 * 20 19 18 39 39 H 1.09000 * 109.60494 * 33.28853 * 20 19 18 40 40 H 0.97002 * 119.78497 * 251.96759 * 21 20 19 41 41 H 1.09000 * 109.46678 * 178.24928 * 24 14 13 42 42 H 1.08995 * 109.46361 * 58.27295 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6239 -2.5572 -0.8901 11 6 0.3725 -2.5831 1.2506 12 6 -0.3432 -3.9367 1.2723 13 6 0.6969 -5.0587 1.2368 14 7 1.5112 -4.9348 0.0211 15 6 2.4285 -6.0739 -0.1165 16 1 1.8555 -6.9970 -0.2039 17 6 3.3000 -5.8850 -1.3605 18 6 3.7972 -7.2239 -1.8771 19 6 4.7671 -7.9207 -0.9405 20 6 4.0663 -8.3486 0.3504 21 7 4.0967 -7.2228 1.2983 22 6 3.3323 -6.1488 1.0962 23 8 3.3606 -5.2293 1.8866 24 6 2.2449 -3.6629 0.0009 25 1 -0.4850 0.8400 0.0004 26 1 0.9951 -2.4860 2.1401 27 1 -0.3655 -1.7812 1.2321 28 1 -0.9954 -4.0174 0.4027 29 1 -0.9372 -4.0197 2.1824 30 1 0.1902 -6.0238 1.2376 31 1 1.3400 -4.9855 2.1137 32 1 2.7141 -5.3950 -2.1381 33 1 4.1552 -5.2582 -1.1077 34 1 4.2918 -7.0654 -2.8354 35 1 2.9380 -7.8755 -2.0361 36 1 5.5822 -7.2393 -0.6969 37 1 5.1731 -8.8021 -1.4370 38 1 4.5855 -9.2042 0.7821 39 1 3.0322 -8.6163 0.1337 40 1 4.6762 -7.2625 2.0751 41 1 2.8625 -3.6141 -0.8960 42 1 2.8808 -3.5963 0.8836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397827817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:36 Heat of formation + Delta-G solvation = -40.643064 kcal Electronic energy + Delta-G solvation = -21851.192830 eV Core-core repulsion = 18830.445397 eV Total energy + Delta-G solvation = -3020.747433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58589 -37.48364 -36.63777 -34.19344 -32.89504 -31.68879 -29.73392 -29.30632 -25.87912 -24.91818 -23.99671 -22.34793 -21.48722 -20.37391 -19.17157 -18.44468 -17.18317 -16.77525 -16.18534 -15.24940 -14.84383 -14.44496 -14.15451 -14.09723 -14.00045 -13.41752 -13.26463 -12.94588 -12.42273 -12.20367 -12.10677 -11.84978 -11.73751 -11.30933 -10.94520 -10.84011 -10.80933 -10.73900 -10.56896 -10.35937 -9.92870 -9.90990 -9.67033 -9.30659 -8.98799 -8.86890 -8.55441 -8.17595 -7.38317 -5.85302 -3.90194 2.85127 3.35566 3.40258 3.44029 3.47446 4.41778 4.51895 4.57724 4.63123 4.69510 4.97146 5.16210 5.29158 5.34926 5.42322 5.44633 5.59011 5.76458 5.83539 5.91651 5.93631 6.06169 6.20875 6.24512 6.33812 6.50014 6.68414 6.73497 6.85573 6.91058 7.01134 7.15849 7.35994 7.39123 7.54086 7.77642 7.87317 7.92388 8.24447 8.31466 8.46871 8.64273 9.13545 9.72955 11.20827 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.005549 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.838743 B = 5044.672757 C = 5406.255029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.509 4.509 8 H 0.051 0.949 9 C 0.057 3.943 10 H 0.029 0.971 11 C -0.109 4.109 12 C -0.114 4.114 13 C 0.049 3.951 14 N -0.510 5.510 15 C 0.071 3.929 16 H 0.095 0.905 17 C -0.109 4.109 18 C -0.120 4.120 19 C -0.142 4.142 20 C 0.109 3.891 21 N -0.732 5.732 22 C 0.484 3.516 23 O -0.529 6.529 24 C 0.049 3.951 25 H 0.258 0.742 26 H 0.031 0.969 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.392 0.608 41 H 0.054 0.946 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -18.705 -1.524 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.039 3.961 10 H 0.047 0.953 11 C -0.147 4.147 12 C -0.151 4.151 13 C -0.079 4.079 14 N -0.232 5.232 15 C -0.042 4.042 16 H 0.113 0.887 17 C -0.147 4.147 18 C -0.158 4.158 19 C -0.181 4.181 20 C -0.016 4.016 21 N -0.386 5.386 22 C 0.269 3.731 23 O -0.405 6.405 24 C -0.077 4.077 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.228 0.772 41 H 0.072 0.928 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.776 -18.050 -1.695 19.027 hybrid contribution 1.340 0.740 1.023 1.841 sum 7.116 -17.310 -0.672 18.728 Atomic orbital electron populations 1.69893 1.05782 1.26196 1.51089 1.24919 0.94805 0.98794 0.95340 0.86716 0.79623 0.83465 0.78498 1.20401 1.21381 1.20429 1.21125 0.92763 0.90749 1.50126 0.93040 1.18627 0.92585 0.90433 0.94502 0.95267 1.21622 0.99890 0.94433 0.98750 1.21631 0.97003 0.96674 0.99838 1.22205 0.95754 0.98051 0.91867 1.62583 1.21263 1.01902 1.37477 1.22107 0.92491 0.97518 0.92073 0.88686 1.21369 0.99205 0.97259 0.96823 1.21166 0.99121 0.96572 0.98894 1.21848 0.99174 1.01036 0.96003 1.21737 1.01547 0.88567 0.89705 1.46253 1.45325 1.18968 1.28053 1.22346 0.80813 0.81452 0.88477 1.90742 1.66405 1.36461 1.46912 1.22594 0.97161 0.87634 1.00347 0.93167 0.95024 0.89366 0.92429 0.93717 0.93356 0.93142 0.89106 0.91744 0.91515 0.91736 0.91246 0.90820 0.89946 0.90667 0.77243 0.92783 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 11.36 55.43 0.63 -25.73 16 2 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -14.74 8.56 -34.44 -0.29 -15.03 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.06 1.53 2.26 -91.69 -0.21 1.32 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.79 5.03 -26.61 -0.13 -2.92 16 12 C -0.11 -2.42 6.09 -26.65 -0.16 -2.58 16 13 C 0.05 0.96 4.99 -3.84 -0.02 0.94 16 14 N -0.51 -9.95 4.67 -227.62 -1.06 -11.01 16 15 C 0.07 1.09 2.04 -68.48 -0.14 0.95 16 16 H 0.10 1.24 6.79 -51.93 -0.35 0.89 16 17 C -0.11 -1.45 3.79 -27.27 -0.10 -1.55 16 18 C -0.12 -1.10 5.28 -27.92 -0.15 -1.24 16 19 C -0.14 -1.09 5.74 -27.36 -0.16 -1.25 16 20 C 0.11 0.83 6.47 -3.67 -0.02 0.81 16 21 N -0.73 -8.32 5.27 -59.90 -0.32 -8.63 16 22 C 0.48 7.72 6.30 -11.26 -0.07 7.65 16 23 O -0.53 -11.01 12.62 5.55 0.07 -10.94 16 24 C 0.05 1.13 4.01 -3.83 -0.02 1.11 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.09 2.47 6.16 -51.93 -0.32 2.15 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.05 1.09 5.82 -51.93 -0.30 0.79 16 32 H 0.09 1.31 7.87 -51.93 -0.41 0.90 16 33 H 0.06 0.96 7.42 -51.93 -0.39 0.58 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.52 7.89 -51.93 -0.41 0.12 16 36 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.55 6.71 -51.93 -0.35 0.20 16 40 H 0.39 4.08 8.91 -40.82 -0.36 3.72 16 41 H 0.05 1.21 6.32 -51.93 -0.33 0.88 16 42 H 0.06 1.40 5.61 -51.93 -0.29 1.11 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -32.60 309.33 -9.46 -42.05 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.85 Total: 2.58 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.57 Total: -10.11 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.75 Total: -45.38 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.60 -9.46 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397827817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.409 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds