Wall clock time and date at job start Mon Mar 30 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99605 * 2 1 4 4 H 1.48504 * 109.46797 * 239.99950 * 3 2 1 5 5 H 1.48492 * 109.47550 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47363 * 120.00360 * 3 2 1 7 7 C 1.37871 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00021 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.50401 * 60.00412 * 9 7 2 11 11 C 1.53115 * 109.53904 * 299.90426 * 9 7 2 12 12 C 1.53125 * 109.16423 * 182.38505 * 11 9 7 13 13 C 1.53030 * 109.27626 * 57.65164 * 12 11 9 14 14 N 1.46842 * 109.53004 * 300.82381 * 13 12 11 15 15 C 1.46899 * 111.00380 * 185.83903 * 14 13 12 16 16 H 1.09001 * 109.62936 * 61.68842 * 15 14 13 17 17 C 1.53065 * 109.63101 * 182.28347 * 15 14 13 18 18 C 1.51875 * 110.73606 * 204.60081 * 17 15 14 19 19 C 1.51777 * 113.82951 * 293.23224 * 18 17 15 20 20 C 1.52985 * 110.88022 * 66.96416 * 19 18 17 21 21 N 1.47199 * 108.66462 * 273.53772 * 20 19 18 22 22 C 1.33365 * 120.42995 * 71.98902 * 21 20 19 23 23 O 1.21284 * 119.89231 * 179.67882 * 22 21 20 24 24 C 1.46849 * 111.19796 * 61.74083 * 14 13 12 25 25 H 0.96997 * 119.99868 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.52247 * 302.29033 * 11 9 7 27 27 H 1.09001 * 109.52296 * 62.47944 * 11 9 7 28 28 H 1.09004 * 109.50156 * 297.71555 * 12 11 9 29 29 H 1.08997 * 109.50326 * 177.59621 * 12 11 9 30 30 H 1.09002 * 109.46363 * 180.80629 * 13 12 11 31 31 H 1.09000 * 109.45664 * 60.83768 * 13 12 11 32 32 H 1.09000 * 109.22612 * 324.95034 * 17 15 14 33 33 H 1.09001 * 109.21905 * 84.30150 * 17 15 14 34 34 H 1.09001 * 108.63066 * 172.08276 * 18 17 15 35 35 H 1.08999 * 108.57857 * 54.33775 * 18 17 15 36 36 H 1.09003 * 109.19473 * 306.60232 * 19 18 17 37 37 H 1.09001 * 109.15776 * 187.30358 * 19 18 17 38 38 H 1.09002 * 109.60581 * 153.78738 * 20 19 18 39 39 H 1.09000 * 109.60494 * 33.28853 * 20 19 18 40 40 H 0.97002 * 119.78497 * 251.96759 * 21 20 19 41 41 H 1.09000 * 109.46678 * 178.24928 * 24 14 13 42 42 H 1.08995 * 109.46361 * 58.27295 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6239 -2.5572 -0.8901 11 6 0.3725 -2.5831 1.2506 12 6 -0.3432 -3.9367 1.2723 13 6 0.6969 -5.0587 1.2368 14 7 1.5112 -4.9348 0.0211 15 6 2.4285 -6.0739 -0.1165 16 1 1.8555 -6.9970 -0.2039 17 6 3.3000 -5.8850 -1.3605 18 6 3.7972 -7.2239 -1.8771 19 6 4.7671 -7.9207 -0.9405 20 6 4.0663 -8.3486 0.3504 21 7 4.0967 -7.2228 1.2983 22 6 3.3323 -6.1488 1.0962 23 8 3.3606 -5.2293 1.8866 24 6 2.2449 -3.6629 0.0009 25 1 -0.4850 0.8400 0.0004 26 1 0.9951 -2.4860 2.1401 27 1 -0.3655 -1.7812 1.2321 28 1 -0.9954 -4.0174 0.4027 29 1 -0.9372 -4.0197 2.1824 30 1 0.1902 -6.0238 1.2376 31 1 1.3400 -4.9855 2.1137 32 1 2.7141 -5.3950 -2.1381 33 1 4.1552 -5.2582 -1.1077 34 1 4.2918 -7.0654 -2.8354 35 1 2.9380 -7.8755 -2.0361 36 1 5.5822 -7.2393 -0.6969 37 1 5.1731 -8.8021 -1.4370 38 1 4.5855 -9.2042 0.7821 39 1 3.0322 -8.6163 0.1337 40 1 4.6762 -7.2625 2.0751 41 1 2.8625 -3.6141 -0.8960 42 1 2.8808 -3.5963 0.8836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397827817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:35 Heat of formation + Delta-G solvation = -64.601132 kcal Electronic energy + Delta-G solvation = -21852.231730 eV Core-core repulsion = 18830.445397 eV Total energy + Delta-G solvation = -3021.786333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83443 -39.04808 -37.70861 -35.78746 -34.46224 -33.16033 -31.69509 -30.52322 -27.14932 -26.84915 -25.07646 -23.97549 -23.15803 -21.33800 -20.72289 -19.98288 -18.46449 -18.13026 -17.90279 -16.82346 -16.37363 -15.93596 -15.71632 -15.21363 -15.02836 -14.81886 -14.59648 -14.29820 -14.22543 -13.88807 -13.59507 -13.25725 -13.05838 -12.84263 -12.63664 -12.52978 -12.37593 -11.94922 -11.75661 -11.66315 -11.59237 -11.49988 -11.34467 -11.21029 -10.84806 -10.63625 -10.37613 -10.00362 -8.97861 -8.07980 -6.21751 1.38202 1.40869 1.48468 1.64418 2.40380 2.42201 3.02987 3.17994 3.56976 3.81325 3.93392 4.06657 4.21694 4.26684 4.32393 4.36413 4.52967 4.54765 4.69425 4.74615 4.77393 4.85511 4.94800 5.03536 5.08186 5.15299 5.17267 5.21596 5.24879 5.28742 5.41503 5.47780 5.51861 5.62346 5.91605 5.97847 6.10238 6.17208 6.22359 6.37925 6.47232 6.89218 7.31800 7.45071 8.96799 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.005549 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.838743 B = 5044.672757 C = 5406.255029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.042 0.958 9 C 0.055 3.945 10 H -0.001 1.001 11 C -0.101 4.101 12 C -0.107 4.107 13 C 0.054 3.946 14 N -0.515 5.515 15 C 0.069 3.931 16 H 0.130 0.870 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.139 4.139 20 C 0.101 3.899 21 N -0.717 5.717 22 C 0.480 3.520 23 O -0.589 6.589 24 C 0.072 3.928 25 H 0.261 0.739 26 H 0.008 0.992 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.399 0.601 41 H 0.051 0.949 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -21.492 -2.159 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.061 0.939 9 C 0.037 3.963 10 H 0.017 0.983 11 C -0.139 4.139 12 C -0.145 4.145 13 C -0.073 4.073 14 N -0.238 5.238 15 C -0.043 4.043 16 H 0.148 0.852 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.177 4.177 20 C -0.021 4.021 21 N -0.369 5.369 22 C 0.266 3.734 23 O -0.470 6.470 24 C -0.056 4.056 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.234 0.766 41 H 0.070 0.930 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.465 -20.910 -2.352 22.012 hybrid contribution 1.159 1.528 1.198 2.261 sum 7.625 -19.382 -1.155 20.860 Atomic orbital electron populations 1.70025 1.07053 1.27134 1.51143 1.25707 0.95737 1.02213 0.94692 0.85684 0.78512 0.79178 0.78705 1.19396 1.20321 1.20221 1.21455 0.92634 0.92515 1.50996 0.93925 1.18559 0.92922 0.91403 0.93448 0.98299 1.21421 0.98871 0.96426 0.97193 1.21549 0.97340 0.94705 1.00910 1.22150 0.95024 0.98933 0.91218 1.62498 1.22161 1.01686 1.37412 1.22298 0.92580 0.96791 0.92619 0.85248 1.21351 0.97732 0.99652 0.95560 1.21155 1.00387 0.94287 0.99435 1.21843 0.98168 1.01782 0.95896 1.22144 1.03018 0.87938 0.89015 1.46208 1.43487 1.18559 1.28602 1.22312 0.81335 0.81810 0.87931 1.90729 1.68515 1.38937 1.48775 1.22115 0.95825 0.88642 0.98974 0.92976 0.97275 0.92244 0.92399 0.91572 0.89490 0.95017 0.90597 0.94321 0.90562 0.89611 0.92970 0.87463 0.86355 0.89375 0.76552 0.93032 0.95158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.82 11.36 21.45 0.24 -55.58 16 2 C 0.02 0.90 5.30 84.65 0.45 1.35 16 3 Si 0.95 46.44 29.54 68.60 2.03 48.47 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.54 -32.60 8.56 25.60 0.22 -32.38 16 8 H 0.04 2.58 7.74 -2.91 -0.02 2.56 16 9 C 0.06 3.11 2.26 -11.49 -0.03 3.09 16 10 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 11 C -0.10 -5.42 5.03 30.67 0.15 -5.27 16 12 C -0.11 -4.60 6.09 30.65 0.19 -4.41 16 13 C 0.05 2.10 4.99 86.32 0.43 2.53 16 14 N -0.52 -20.12 4.67 -874.04 -4.08 -24.20 16 15 C 0.07 2.02 2.04 44.42 0.09 2.11 16 16 H 0.13 2.88 6.79 -2.39 -0.02 2.86 16 17 C -0.10 -2.70 3.79 30.25 0.11 -2.59 16 18 C -0.11 -1.73 5.28 29.82 0.16 -1.57 16 19 C -0.14 -1.58 5.74 30.19 0.17 -1.41 16 20 C 0.10 1.09 6.47 86.24 0.56 1.65 16 21 N -0.72 -14.64 5.27 -462.60 -2.44 -17.08 16 22 C 0.48 14.96 6.30 88.11 0.55 15.52 16 23 O -0.59 -25.18 12.62 -3.04 -0.04 -25.22 16 24 C 0.07 3.47 4.01 86.33 0.35 3.81 16 25 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.06 3.50 6.16 -2.39 -0.01 3.48 16 28 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.09 2.70 8.12 -2.39 -0.02 2.69 16 31 H 0.03 1.38 5.82 -2.39 -0.01 1.36 16 32 H 0.08 2.18 7.87 -2.39 -0.02 2.16 16 33 H 0.04 1.17 7.42 -2.39 -0.02 1.16 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.09 0.98 7.89 -2.39 -0.02 0.97 16 36 H 0.05 0.81 8.05 -2.39 -0.02 0.79 16 37 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 0.81 6.71 -2.39 -0.02 0.79 16 40 H 0.40 7.54 8.91 -92.71 -0.83 6.72 16 41 H 0.05 2.44 6.32 -2.39 -0.02 2.43 16 42 H 0.03 1.63 5.61 -2.39 -0.01 1.62 16 Total: -1.00 -75.98 309.33 -0.69 -76.67 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.18 Total: 14.52 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 3.41 Total: -17.57 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -6.27 Total: -96.86 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.04 Total: -25.22 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.98 -0.69 -76.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397827817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.070 kcal (2) G-P(sol) polarization free energy of solvation -75.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds