Wall clock time and date at job start Mon Mar 30 2020 04:49:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86798 * 119.99973 * 2 1
4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1
5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1
6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1
7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3
8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1
9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1
10 10 N 1.46497 * 109.47141 * 179.97438 * 9 7 2
11 11 C 1.34777 * 120.00075 * 179.97438 * 10 9 7
12 12 O 1.21282 * 119.99645 * 0.02562 * 11 10 9
13 13 C 1.50692 * 120.00138 * 180.02562 * 11 10 9
14 14 N 1.46900 * 109.47199 * 180.02562 * 13 11 10
15 15 C 1.46901 * 110.99988 * 180.02562 * 14 13 11
16 16 C 1.53001 * 109.47022 * 179.97438 * 15 14 13
17 17 H 1.08996 * 109.61688 * 54.64136 * 16 15 14
18 18 C 1.53301 * 109.61708 * 294.09810 * 16 15 14
19 19 C 1.54478 * 107.11065 * 164.38586 * 18 16 15
20 20 C 1.52708 * 109.53652 * 56.75760 * 19 18 16
21 21 H 1.09005 * 114.90928 * 125.95845 * 20 19 18
22 22 C 1.51363 * 115.52002 * 267.54391 * 20 19 18
23 23 C 1.52063 * 120.52550 * 336.64899 * 20 19 18
24 24 H 1.08998 * 115.93506 * 150.00149 * 23 20 19
25 25 C 1.52075 * 120.01965 * 5.28418 * 23 20 19
26 26 H 0.96997 * 119.99848 * 0.02562 * 1 2 3
27 27 H 1.08994 * 109.46697 * 300.00254 * 9 7 2
28 28 H 1.09000 * 109.47083 * 59.99509 * 9 7 2
29 29 H 0.97000 * 119.99760 * 0.02562 * 10 9 7
30 30 H 1.09007 * 109.47323 * 300.00043 * 13 11 10
31 31 H 1.09000 * 109.47412 * 60.00056 * 13 11 10
32 32 H 1.00901 * 110.99981 * 303.94935 * 14 13 11
33 33 H 1.08998 * 109.46945 * 299.99583 * 15 14 13
34 34 H 1.09001 * 109.47546 * 59.99929 * 15 14 13
35 35 H 1.08992 * 109.62031 * 285.55273 * 18 16 15
36 36 H 1.08995 * 109.61586 * 46.10101 * 18 16 15
37 37 H 1.08997 * 111.19391 * 295.77724 * 19 18 16
38 38 H 1.09000 * 108.00728 * 175.78158 * 19 18 16
39 39 H 1.09003 * 117.05648 * 4.28856 * 22 20 19
40 40 H 1.08998 * 117.72262 * 219.52273 * 22 20 19
41 41 H 1.09012 * 109.26461 * 219.25383 * 25 23 20
42 42 H 1.08999 * 109.27067 * 99.79113 * 25 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 1.4001
5 1 1.4466 2.6527 -0.7001
6 1 3.5467 1.4402 -0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 6 3.5116 -1.1940 0.0000
10 7 4.0000 -2.5752 -0.0001
11 6 5.3251 -2.8215 -0.0001
12 8 6.1131 -1.8996 0.0004
13 6 5.8274 -4.2422 -0.0008
14 7 7.2964 -4.2422 -0.0002
15 6 7.8229 -5.6136 -0.0014
16 6 9.3523 -5.5727 -0.0013
17 1 9.7022 -4.9698 0.8366
18 6 9.8511 -4.9683 -1.3189
19 6 11.3334 -4.5862 -1.1112
20 6 12.1224 -5.8189 -0.6755
21 1 12.9963 -6.0443 -1.2868
22 6 12.2488 -6.0173 0.8197
23 6 11.4188 -6.9900 -0.0078
24 1 11.8624 -7.9713 -0.1760
25 6 9.9037 -6.9931 0.1229
26 1 -0.4850 0.8400 -0.0004
27 1 3.8752 -0.6796 -0.8894
28 1 3.8746 -0.6807 0.8905
29 1 3.3696 -3.3125 -0.0009
30 1 5.4640 -4.7566 0.8889
31 1 5.4642 -4.7556 -0.8911
32 1 7.6583 -3.7156 -0.7810
33 1 7.4730 -6.1379 0.8878
34 1 7.4738 -6.1360 -0.8921
35 1 9.7342 -5.6953 -2.1225
36 1 9.2792 -4.0694 -1.5488
37 1 11.4373 -3.8058 -0.3574
38 1 11.7245 -4.2244 -2.0621
39 1 11.7135 -5.3161 1.4599
40 1 13.2048 -6.3719 1.2051
41 1 9.6274 -7.4026 1.0947
42 1 9.4761 -7.6150 -0.6635
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000403416311.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:54
Heat of formation + Delta-G solvation = -53.776081 kcal
Electronic energy + Delta-G solvation = -19730.193428 eV
Core-core repulsion = 16708.876505 eV
Total energy + Delta-G solvation = -3021.316923 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.82182 -40.41720 -37.22030 -36.09323 -34.41231 -33.85483 -31.86093 -30.44072
-28.28260 -25.63440 -24.83085 -23.74936 -22.39065 -21.62913 -21.40521 -19.43899
-19.19822 -17.94784 -17.20355 -16.94774 -16.88275 -16.11706 -15.74920 -15.48274
-15.32233 -14.88011 -14.76783 -14.39723 -14.27534 -14.11503 -13.73875 -13.48651
-13.07613 -13.05037 -12.98984 -12.68591 -12.61676 -12.16243 -11.93915 -11.70191
-11.66099 -11.49242 -11.22424 -10.92446 -10.75050 -10.69742 -10.44246 -9.92559
-9.35920 -8.40614 -6.47482 1.32388 1.34600 1.47168 1.75099 2.27458
2.36325 2.89786 2.94797 3.29992 3.71604 3.82133 3.87591 3.95739
4.08356 4.20618 4.29995 4.35866 4.39756 4.48944 4.60887 4.63330
4.70200 4.75425 4.79747 4.83903 4.98329 5.02899 5.06869 5.08579
5.16804 5.25178 5.25822 5.34479 5.39254 5.45870 5.52935 5.55363
5.96903 6.11403 6.35679 6.53827 6.87532 7.15703 7.43859 8.74086
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.046430 B = 0.002892 C = 0.002781
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 602.908076 B = 9680.777269 C =10064.799262
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.026 3.974
3 Si 0.938 3.062
4 H -0.266 1.266
5 H -0.273 1.273
6 H -0.261 1.261
7 C -0.546 4.546
8 H 0.060 0.940
9 C 0.232 3.768
10 N -0.707 5.707
11 C 0.496 3.504
12 O -0.588 6.588
13 C 0.054 3.946
14 N -0.691 5.691
15 C 0.067 3.933
16 C -0.084 4.084
17 H 0.064 0.936
18 C -0.115 4.115
19 C -0.091 4.091
20 C -0.152 4.152
21 H 0.106 0.894
22 C -0.187 4.187
23 C -0.139 4.139
24 H 0.109 0.891
25 C -0.079 4.079
26 H 0.272 0.728
27 H 0.012 0.988
28 H 0.009 0.991
29 H 0.409 0.591
30 H 0.120 0.880
31 H 0.083 0.917
32 H 0.344 0.656
33 H 0.080 0.920
34 H 0.043 0.957
35 H 0.073 0.927
36 H 0.053 0.947
37 H 0.059 0.941
38 H 0.066 0.934
39 H 0.085 0.915
40 H 0.098 0.902
41 H 0.072 0.928
42 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.370 -16.821 -1.693 28.039
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.175 4.175
3 Si 0.762 3.238
4 H -0.191 1.191
5 H -0.198 1.198
6 H -0.186 1.186
7 C -0.584 4.584
8 H 0.078 0.922
9 C 0.108 3.892
10 N -0.358 5.358
11 C 0.283 3.717
12 O -0.468 6.468
13 C -0.078 4.078
14 N -0.324 5.324
15 C -0.062 4.062
16 C -0.103 4.103
17 H 0.082 0.918
18 C -0.152 4.152
19 C -0.128 4.128
20 C -0.170 4.170
21 H 0.124 0.876
22 C -0.224 4.224
23 C -0.157 4.157
24 H 0.128 0.872
25 C -0.116 4.116
26 H 0.082 0.918
27 H 0.029 0.971
28 H 0.027 0.973
29 H 0.245 0.755
30 H 0.138 0.862
31 H 0.101 0.899
32 H 0.164 0.836
33 H 0.099 0.901
34 H 0.061 0.939
35 H 0.092 0.908
36 H 0.071 0.929
37 H 0.078 0.922
38 H 0.085 0.915
39 H 0.104 0.896
40 H 0.117 0.883
41 H 0.091 0.909
42 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 22.792 -15.976 -1.012 27.852
hybrid contribution -0.565 0.554 -0.782 1.112
sum 22.228 -15.422 -1.794 27.113
Atomic orbital electron populations
1.69979 1.07658 1.28613 1.50734 1.25605 0.95553 1.02686 0.93618
0.85852 0.79213 0.79361 0.79416 1.19080 1.19758 1.18557 1.21301
0.89955 0.94606 1.52547 0.92156 1.19066 0.93323 0.81261 0.95507
1.46021 1.06841 1.09619 1.73284 1.21389 0.81974 0.92746 0.75557
1.90631 1.56296 1.48063 1.51856 1.21766 0.89917 0.91371 1.04780
1.60178 1.05309 1.15247 1.51707 1.22053 0.94709 0.87936 1.01479
1.21188 0.93664 0.97224 0.98187 0.91774 1.21930 0.95700 1.00269
0.97324 1.21334 0.94607 0.95675 1.01190 1.21919 1.01851 0.97577
0.95679 0.87583 1.22819 1.01924 1.03524 0.94099 1.21868 0.94662
0.95032 1.04187 0.87243 1.20826 0.92493 0.95638 1.02665 0.91839
0.97052 0.97336 0.75510 0.86214 0.89886 0.83581 0.90124 0.93850
0.90817 0.92883 0.92232 0.91515 0.89639 0.88343 0.90920 0.90471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16
2 C 0.03 1.46 5.47 84.65 0.46 1.92 16
3 Si 0.94 44.47 27.47 68.60 1.88 46.35 16
4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16
6 H -0.26 -12.32 6.54 99.48 0.65 -11.67 16
7 C -0.55 -30.26 9.83 25.60 0.25 -30.01 16
8 H 0.06 3.49 7.84 -2.92 -0.02 3.47 16
9 C 0.23 11.50 4.50 85.64 0.39 11.89 16
10 N -0.71 -28.04 5.55 -466.80 -2.59 -30.63 16
11 C 0.50 18.33 7.87 87.65 0.69 19.02 16
12 O -0.59 -26.84 16.20 -3.04 -0.05 -26.89 16
13 C 0.05 1.33 6.17 85.55 0.53 1.86 16
14 N -0.69 -17.06 6.13 -517.94 -3.17 -20.23 16
15 C 0.07 1.17 5.15 86.30 0.44 1.61 16
16 C -0.08 -1.40 2.13 -10.74 -0.02 -1.42 16
17 H 0.06 1.32 7.06 -2.39 -0.02 1.31 16
18 C -0.11 -1.94 5.36 31.20 0.17 -1.77 16
19 C -0.09 -1.49 5.82 31.00 0.18 -1.31 16
20 C -0.15 -2.19 6.10 -11.74 -0.07 -2.26 16
21 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16
22 C -0.19 -2.69 9.51 29.83 0.28 -2.41 16
23 C -0.14 -1.85 6.09 -11.64 -0.07 -1.92 16
24 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16
25 C -0.08 -1.03 5.22 30.25 0.16 -0.88 16
26 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16
27 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16
28 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16
29 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16
30 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16
31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
32 H 0.34 9.13 6.53 -89.69 -0.59 8.55 16
33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16
34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16
35 H 0.07 1.13 8.04 -2.39 -0.02 1.11 16
36 H 0.05 1.04 6.25 -2.39 -0.01 1.02 16
37 H 0.06 1.10 8.02 -2.39 -0.02 1.08 16
38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
39 H 0.09 1.42 7.25 -2.39 -0.02 1.41 16
40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
41 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16
42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
Total: -1.00 -67.74 333.08 -0.65 -68.39
By element:
Atomic # 1 Polarization: 24.56 SS G_CDS: -0.40 Total: 24.16 kcal
Atomic # 6 Polarization: -9.07 SS G_CDS: 3.38 Total: -5.69 kcal
Atomic # 7 Polarization: -100.86 SS G_CDS: -5.46 Total: -106.32 kcal
Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal
Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal
Total: -67.74 -0.65 -68.39 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000403416311.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.613 kcal
(2) G-P(sol) polarization free energy of solvation -67.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.129 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.776 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds