Wall clock time and date at job start Mon Mar 30 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00075 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99645 * 0.02562 * 11 10 9 13 13 C 1.50692 * 120.00138 * 180.02562 * 11 10 9 14 14 N 1.46900 * 109.47199 * 180.02562 * 13 11 10 15 15 C 1.46901 * 110.99988 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47022 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.61688 * 54.64136 * 16 15 14 18 18 C 1.53301 * 109.61708 * 294.09810 * 16 15 14 19 19 C 1.54478 * 107.11065 * 164.38586 * 18 16 15 20 20 C 1.52708 * 109.53652 * 56.75760 * 19 18 16 21 21 H 1.09005 * 114.90928 * 125.95845 * 20 19 18 22 22 C 1.51363 * 115.52002 * 267.54391 * 20 19 18 23 23 C 1.52063 * 120.52550 * 336.64899 * 20 19 18 24 24 H 1.08998 * 115.93506 * 150.00149 * 23 20 19 25 25 C 1.52075 * 120.01965 * 5.28418 * 23 20 19 26 26 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 28 28 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 29 29 H 0.97000 * 119.99760 * 0.02562 * 10 9 7 30 30 H 1.09007 * 109.47323 * 300.00043 * 13 11 10 31 31 H 1.09000 * 109.47412 * 60.00056 * 13 11 10 32 32 H 1.00901 * 110.99981 * 303.94935 * 14 13 11 33 33 H 1.08998 * 109.46945 * 299.99583 * 15 14 13 34 34 H 1.09001 * 109.47546 * 59.99929 * 15 14 13 35 35 H 1.08992 * 109.62031 * 285.55273 * 18 16 15 36 36 H 1.08995 * 109.61586 * 46.10101 * 18 16 15 37 37 H 1.08997 * 111.19391 * 295.77724 * 19 18 16 38 38 H 1.09000 * 108.00728 * 175.78158 * 19 18 16 39 39 H 1.09003 * 117.05648 * 4.28856 * 22 20 19 40 40 H 1.08998 * 117.72262 * 219.52273 * 22 20 19 41 41 H 1.09012 * 109.26461 * 219.25383 * 25 23 20 42 42 H 1.08999 * 109.27067 * 99.79113 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 5.3251 -2.8215 -0.0001 12 8 6.1131 -1.8996 0.0004 13 6 5.8274 -4.2422 -0.0008 14 7 7.2964 -4.2422 -0.0002 15 6 7.8229 -5.6136 -0.0014 16 6 9.3523 -5.5727 -0.0013 17 1 9.7022 -4.9698 0.8366 18 6 9.8511 -4.9683 -1.3189 19 6 11.3334 -4.5862 -1.1112 20 6 12.1224 -5.8189 -0.6755 21 1 12.9963 -6.0443 -1.2868 22 6 12.2488 -6.0173 0.8197 23 6 11.4188 -6.9900 -0.0078 24 1 11.8624 -7.9713 -0.1760 25 6 9.9037 -6.9931 0.1229 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6796 -0.8894 28 1 3.8746 -0.6807 0.8905 29 1 3.3696 -3.3125 -0.0009 30 1 5.4640 -4.7566 0.8889 31 1 5.4642 -4.7556 -0.8911 32 1 7.6583 -3.7156 -0.7810 33 1 7.4730 -6.1379 0.8878 34 1 7.4738 -6.1360 -0.8921 35 1 9.7342 -5.6953 -2.1225 36 1 9.2792 -4.0694 -1.5488 37 1 11.4373 -3.8058 -0.3574 38 1 11.7245 -4.2244 -2.0621 39 1 11.7135 -5.3161 1.4599 40 1 13.2048 -6.3719 1.2051 41 1 9.6274 -7.4026 1.0947 42 1 9.4761 -7.6150 -0.6635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403416311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:54 Heat of formation + Delta-G solvation = -53.776081 kcal Electronic energy + Delta-G solvation = -19730.193428 eV Core-core repulsion = 16708.876505 eV Total energy + Delta-G solvation = -3021.316923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82182 -40.41720 -37.22030 -36.09323 -34.41231 -33.85483 -31.86093 -30.44072 -28.28260 -25.63440 -24.83085 -23.74936 -22.39065 -21.62913 -21.40521 -19.43899 -19.19822 -17.94784 -17.20355 -16.94774 -16.88275 -16.11706 -15.74920 -15.48274 -15.32233 -14.88011 -14.76783 -14.39723 -14.27534 -14.11503 -13.73875 -13.48651 -13.07613 -13.05037 -12.98984 -12.68591 -12.61676 -12.16243 -11.93915 -11.70191 -11.66099 -11.49242 -11.22424 -10.92446 -10.75050 -10.69742 -10.44246 -9.92559 -9.35920 -8.40614 -6.47482 1.32388 1.34600 1.47168 1.75099 2.27458 2.36325 2.89786 2.94797 3.29992 3.71604 3.82133 3.87591 3.95739 4.08356 4.20618 4.29995 4.35866 4.39756 4.48944 4.60887 4.63330 4.70200 4.75425 4.79747 4.83903 4.98329 5.02899 5.06869 5.08579 5.16804 5.25178 5.25822 5.34479 5.39254 5.45870 5.52935 5.55363 5.96903 6.11403 6.35679 6.53827 6.87532 7.15703 7.43859 8.74086 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046430 B = 0.002892 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.908076 B = 9680.777269 C =10064.799262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.232 3.768 10 N -0.707 5.707 11 C 0.496 3.504 12 O -0.588 6.588 13 C 0.054 3.946 14 N -0.691 5.691 15 C 0.067 3.933 16 C -0.084 4.084 17 H 0.064 0.936 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.152 4.152 21 H 0.106 0.894 22 C -0.187 4.187 23 C -0.139 4.139 24 H 0.109 0.891 25 C -0.079 4.079 26 H 0.272 0.728 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.409 0.591 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.344 0.656 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.370 -16.821 -1.693 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.108 3.892 10 N -0.358 5.358 11 C 0.283 3.717 12 O -0.468 6.468 13 C -0.078 4.078 14 N -0.324 5.324 15 C -0.062 4.062 16 C -0.103 4.103 17 H 0.082 0.918 18 C -0.152 4.152 19 C -0.128 4.128 20 C -0.170 4.170 21 H 0.124 0.876 22 C -0.224 4.224 23 C -0.157 4.157 24 H 0.128 0.872 25 C -0.116 4.116 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.027 0.973 29 H 0.245 0.755 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 22.792 -15.976 -1.012 27.852 hybrid contribution -0.565 0.554 -0.782 1.112 sum 22.228 -15.422 -1.794 27.113 Atomic orbital electron populations 1.69979 1.07658 1.28613 1.50734 1.25605 0.95553 1.02686 0.93618 0.85852 0.79213 0.79361 0.79416 1.19080 1.19758 1.18557 1.21301 0.89955 0.94606 1.52547 0.92156 1.19066 0.93323 0.81261 0.95507 1.46021 1.06841 1.09619 1.73284 1.21389 0.81974 0.92746 0.75557 1.90631 1.56296 1.48063 1.51856 1.21766 0.89917 0.91371 1.04780 1.60178 1.05309 1.15247 1.51707 1.22053 0.94709 0.87936 1.01479 1.21188 0.93664 0.97224 0.98187 0.91774 1.21930 0.95700 1.00269 0.97324 1.21334 0.94607 0.95675 1.01190 1.21919 1.01851 0.97577 0.95679 0.87583 1.22819 1.01924 1.03524 0.94099 1.21868 0.94662 0.95032 1.04187 0.87243 1.20826 0.92493 0.95638 1.02665 0.91839 0.97052 0.97336 0.75510 0.86214 0.89886 0.83581 0.90124 0.93850 0.90817 0.92883 0.92232 0.91515 0.89639 0.88343 0.90920 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16 2 C 0.03 1.46 5.47 84.65 0.46 1.92 16 3 Si 0.94 44.47 27.47 68.60 1.88 46.35 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.32 6.54 99.48 0.65 -11.67 16 7 C -0.55 -30.26 9.83 25.60 0.25 -30.01 16 8 H 0.06 3.49 7.84 -2.92 -0.02 3.47 16 9 C 0.23 11.50 4.50 85.64 0.39 11.89 16 10 N -0.71 -28.04 5.55 -466.80 -2.59 -30.63 16 11 C 0.50 18.33 7.87 87.65 0.69 19.02 16 12 O -0.59 -26.84 16.20 -3.04 -0.05 -26.89 16 13 C 0.05 1.33 6.17 85.55 0.53 1.86 16 14 N -0.69 -17.06 6.13 -517.94 -3.17 -20.23 16 15 C 0.07 1.17 5.15 86.30 0.44 1.61 16 16 C -0.08 -1.40 2.13 -10.74 -0.02 -1.42 16 17 H 0.06 1.32 7.06 -2.39 -0.02 1.31 16 18 C -0.11 -1.94 5.36 31.20 0.17 -1.77 16 19 C -0.09 -1.49 5.82 31.00 0.18 -1.31 16 20 C -0.15 -2.19 6.10 -11.74 -0.07 -2.26 16 21 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 22 C -0.19 -2.69 9.51 29.83 0.28 -2.41 16 23 C -0.14 -1.85 6.09 -11.64 -0.07 -1.92 16 24 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 25 C -0.08 -1.03 5.22 30.25 0.16 -0.88 16 26 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 27 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 28 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 29 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16 30 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.34 9.13 6.53 -89.69 -0.59 8.55 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.13 8.04 -2.39 -0.02 1.11 16 36 H 0.05 1.04 6.25 -2.39 -0.01 1.02 16 37 H 0.06 1.10 8.02 -2.39 -0.02 1.08 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.42 7.25 -2.39 -0.02 1.41 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -67.74 333.08 -0.65 -68.39 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.40 Total: 24.16 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 3.38 Total: -5.69 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -5.46 Total: -106.32 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -67.74 -0.65 -68.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403416311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.613 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds