Wall clock time and date at job start Mon Mar 30 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00564 * 2 1 4 4 H 1.48497 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47107 * 299.99925 * 3 2 1 6 6 H 1.48508 * 109.47067 * 59.99613 * 3 2 1 7 7 C 1.37883 * 119.99349 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99604 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46884 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00008 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00123 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47306 * 180.02562 * 13 11 10 15 15 C 1.46903 * 110.99987 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47019 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.61853 * 54.99981 * 16 15 14 18 18 C 1.53306 * 109.76805 * 294.54043 * 16 15 14 19 19 C 1.51024 * 110.50554 * 167.76808 * 18 16 15 20 20 C 1.52067 * 111.26705 * 51.73258 * 19 18 16 21 21 H 1.09012 * 114.63250 * 195.75365 * 20 19 18 22 22 C 1.49171 * 119.10081 * 52.68674 * 20 19 18 23 23 C 1.52066 * 120.02804 * 340.89925 * 20 19 18 24 24 H 1.08992 * 117.26017 * 215.57016 * 23 20 19 25 25 C 1.52712 * 120.51814 * 5.29168 * 23 20 19 26 26 H 0.97007 * 119.99400 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46986 * 60.00090 * 9 7 2 28 28 H 1.08991 * 109.47475 * 299.99966 * 9 7 2 29 29 H 0.96999 * 119.99967 * 0.02562 * 10 9 7 30 30 H 1.09002 * 109.46842 * 60.00349 * 13 11 10 31 31 H 1.09000 * 109.47021 * 300.00753 * 13 11 10 32 32 H 1.00895 * 111.00170 * 56.04955 * 14 13 11 33 33 H 1.08999 * 109.47309 * 59.99749 * 15 14 13 34 34 H 1.08998 * 109.46945 * 300.00049 * 15 14 13 35 35 H 1.08997 * 109.61598 * 285.47140 * 18 16 15 36 36 H 1.08996 * 109.61744 * 46.01380 * 18 16 15 37 37 H 1.09000 * 106.78413 * 292.56996 * 19 18 16 38 38 H 1.08996 * 110.92614 * 173.60140 * 19 18 16 39 39 H 1.08997 * 117.66769 * 142.05228 * 22 20 19 40 40 H 1.09004 * 117.01517 * 357.45421 * 22 20 19 41 41 H 1.08999 * 109.35637 * 216.70223 * 25 23 20 42 42 H 1.08997 * 109.35964 * 97.12114 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0005 11 6 1.7534 -4.8834 0.0011 12 8 0.5610 -5.1050 0.0011 13 6 2.7326 -6.0290 0.0016 14 7 1.9980 -7.3011 0.0015 15 6 2.9224 -8.4428 0.0027 16 6 2.1222 -9.7469 0.0019 17 1 1.4298 -9.7509 -0.8400 18 6 1.3388 -9.8753 1.3134 19 6 0.3218 -10.9875 1.2154 20 6 0.9630 -12.2806 0.7367 21 1 0.2580 -13.0359 0.3892 22 6 2.1660 -12.8009 1.4490 23 6 2.3054 -12.2457 0.0231 24 1 2.4633 -12.9667 -0.7789 25 6 3.0773 -10.9351 -0.1133 26 1 -0.4849 0.8402 -0.0004 27 1 0.6245 -2.5570 -0.8897 28 1 0.6238 -2.5567 0.8902 29 1 3.1564 -3.4356 0.0009 30 1 3.3591 -5.9709 0.8917 31 1 3.3594 -5.9716 -0.8882 32 1 1.3619 -7.3513 -0.7801 33 1 3.5497 -8.4015 0.8931 34 1 3.5511 -8.4022 -0.8868 35 1 2.0204 -10.1369 2.1227 36 1 0.8447 -8.9302 1.5386 37 1 -0.4262 -10.6670 0.4903 38 1 -0.1605 -11.1598 2.1775 39 1 2.2494 -13.8797 1.5801 40 1 2.5581 -12.1953 2.2661 41 1 3.5732 -10.9072 -1.0835 42 1 3.8272 -10.8736 0.6753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403416318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:58 Heat of formation + Delta-G solvation = -36.723813 kcal Electronic energy + Delta-G solvation = -19637.288674 eV Core-core repulsion = 16616.711192 eV Total energy + Delta-G solvation = -3020.577482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07025 -38.80020 -36.18632 -34.14030 -33.03967 -32.28854 -31.25509 -28.35372 -26.66175 -24.62331 -23.91409 -22.23917 -21.45212 -21.14249 -19.64974 -18.58429 -17.19630 -16.50358 -15.93183 -15.64433 -15.28470 -14.61811 -14.53228 -14.38926 -14.10679 -13.87463 -13.67603 -13.09497 -12.74995 -12.39153 -12.32382 -12.27979 -11.96484 -11.85530 -11.47445 -11.35701 -10.95179 -10.92021 -10.86429 -10.81716 -10.44140 -10.31492 -9.96186 -9.80407 -9.37232 -9.01327 -8.73150 -8.32045 -7.84822 -6.16246 -4.22994 3.23554 3.30530 3.33601 3.41631 3.51892 3.85093 4.30777 4.36568 4.49985 4.59282 4.64836 4.83244 4.89476 5.06780 5.14877 5.19862 5.24139 5.36309 5.44593 5.52108 5.53560 5.55729 5.60907 5.61612 5.68768 5.69742 5.74597 5.91669 6.04829 6.12601 6.13234 6.31731 6.41690 6.95676 7.33466 7.42770 7.47406 7.53658 7.68744 7.98141 8.65540 8.80061 9.14166 9.43831 10.94044 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.059292 B = 0.002656 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.126138 B =10540.057162 C =10827.645698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.040 3.960 14 N -0.670 5.670 15 C 0.064 3.936 16 C -0.080 4.080 17 H 0.072 0.928 18 C -0.113 4.113 19 C -0.092 4.092 20 C -0.135 4.135 21 H 0.094 0.906 22 C -0.184 4.184 23 C -0.152 4.152 24 H 0.100 0.900 25 C -0.082 4.082 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.390 0.610 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.350 0.650 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.607 -22.935 0.332 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.092 4.092 14 N -0.303 5.303 15 C -0.065 4.065 16 C -0.099 4.099 17 H 0.091 0.909 18 C -0.150 4.150 19 C -0.129 4.129 20 C -0.153 4.153 21 H 0.112 0.888 22 C -0.221 4.221 23 C -0.170 4.170 24 H 0.118 0.882 25 C -0.120 4.120 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.222 0.778 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.480 -22.943 1.017 23.862 hybrid contribution 1.244 0.959 -0.906 1.813 sum 7.724 -21.983 0.112 23.301 Atomic orbital electron populations 1.69990 1.06108 1.27169 1.49007 1.24965 0.94924 0.99479 0.94745 0.86358 0.79808 0.82972 0.77748 1.19655 1.20812 1.20788 1.21270 0.93283 0.90479 1.53036 0.91874 1.19088 0.88313 0.81953 0.97698 1.46450 1.11058 1.06151 1.72781 1.20373 0.89564 0.84242 0.77819 1.90663 1.16686 1.84719 1.50105 1.21831 0.95660 0.89585 1.02146 1.60071 1.18930 0.99901 1.51372 1.21998 0.94210 0.89921 1.00374 1.21093 0.97063 0.92803 0.98967 0.90945 1.21239 0.97968 0.99243 0.96546 1.20554 0.98480 0.92703 1.01209 1.21340 0.91200 0.99581 1.03216 0.88803 1.22639 1.03367 1.00575 0.95479 1.22158 1.00209 0.99180 0.95426 0.88172 1.21033 0.97055 0.92035 1.01885 0.92508 0.95636 0.95532 0.77811 0.88690 0.92982 0.83052 0.91020 0.95384 0.92982 0.89396 0.91838 0.91376 0.89388 0.88748 0.91749 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.68 5.43 -5.19 -0.03 6.66 16 10 N -0.72 -15.05 5.55 -61.47 -0.34 -15.39 16 11 C 0.50 9.87 7.87 -10.99 -0.09 9.78 16 12 O -0.54 -13.15 16.20 5.55 0.09 -13.06 16 13 C 0.04 0.57 6.17 -4.98 -0.03 0.54 16 14 N -0.67 -9.04 5.44 -115.06 -0.63 -9.66 16 15 C 0.06 0.66 5.09 -3.82 -0.02 0.64 16 16 C -0.08 -0.77 2.33 -90.52 -0.21 -0.98 16 17 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 18 C -0.11 -1.15 4.92 -27.57 -0.14 -1.29 16 19 C -0.09 -0.86 5.89 -28.20 -0.17 -1.03 16 20 C -0.14 -1.15 5.91 -93.45 -0.55 -1.70 16 21 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 22 C -0.18 -1.45 9.50 -28.28 -0.27 -1.72 16 23 C -0.15 -1.23 6.29 -90.91 -0.57 -1.81 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 25 C -0.08 -0.67 5.12 -26.94 -0.14 -0.81 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.35 4.96 8.43 -39.29 -0.33 4.63 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.52 7.10 -51.93 -0.37 0.15 16 36 H 0.09 1.10 7.48 -51.93 -0.39 0.71 16 37 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.77 7.26 -51.93 -0.38 0.39 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -31.46 338.94 -9.93 -41.39 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.25 Total: 6.40 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.63 Total: -5.17 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.23 Total: -50.55 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.46 -9.93 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403416318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.667 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds