Wall clock time and date at job start Mon Mar 30 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00564 * 2 1 4 4 H 1.48497 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47107 * 299.99925 * 3 2 1 6 6 H 1.48508 * 109.47067 * 59.99613 * 3 2 1 7 7 C 1.37883 * 119.99349 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99604 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46884 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00008 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00123 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47306 * 180.02562 * 13 11 10 15 15 C 1.46903 * 110.99987 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47019 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.61853 * 54.99981 * 16 15 14 18 18 C 1.53306 * 109.76805 * 294.54043 * 16 15 14 19 19 C 1.51024 * 110.50554 * 167.76808 * 18 16 15 20 20 C 1.52067 * 111.26705 * 51.73258 * 19 18 16 21 21 H 1.09012 * 114.63250 * 195.75365 * 20 19 18 22 22 C 1.49171 * 119.10081 * 52.68674 * 20 19 18 23 23 C 1.52066 * 120.02804 * 340.89925 * 20 19 18 24 24 H 1.08992 * 117.26017 * 215.57016 * 23 20 19 25 25 C 1.52712 * 120.51814 * 5.29168 * 23 20 19 26 26 H 0.97007 * 119.99400 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46986 * 60.00090 * 9 7 2 28 28 H 1.08991 * 109.47475 * 299.99966 * 9 7 2 29 29 H 0.96999 * 119.99967 * 0.02562 * 10 9 7 30 30 H 1.09002 * 109.46842 * 60.00349 * 13 11 10 31 31 H 1.09000 * 109.47021 * 300.00753 * 13 11 10 32 32 H 1.00895 * 111.00170 * 56.04955 * 14 13 11 33 33 H 1.08999 * 109.47309 * 59.99749 * 15 14 13 34 34 H 1.08998 * 109.46945 * 300.00049 * 15 14 13 35 35 H 1.08997 * 109.61598 * 285.47140 * 18 16 15 36 36 H 1.08996 * 109.61744 * 46.01380 * 18 16 15 37 37 H 1.09000 * 106.78413 * 292.56996 * 19 18 16 38 38 H 1.08996 * 110.92614 * 173.60140 * 19 18 16 39 39 H 1.08997 * 117.66769 * 142.05228 * 22 20 19 40 40 H 1.09004 * 117.01517 * 357.45421 * 22 20 19 41 41 H 1.08999 * 109.35637 * 216.70223 * 25 23 20 42 42 H 1.08997 * 109.35964 * 97.12114 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0005 11 6 1.7534 -4.8834 0.0011 12 8 0.5610 -5.1050 0.0011 13 6 2.7326 -6.0290 0.0016 14 7 1.9980 -7.3011 0.0015 15 6 2.9224 -8.4428 0.0027 16 6 2.1222 -9.7469 0.0019 17 1 1.4298 -9.7509 -0.8400 18 6 1.3388 -9.8753 1.3134 19 6 0.3218 -10.9875 1.2154 20 6 0.9630 -12.2806 0.7367 21 1 0.2580 -13.0359 0.3892 22 6 2.1660 -12.8009 1.4490 23 6 2.3054 -12.2457 0.0231 24 1 2.4633 -12.9667 -0.7789 25 6 3.0773 -10.9351 -0.1133 26 1 -0.4849 0.8402 -0.0004 27 1 0.6245 -2.5570 -0.8897 28 1 0.6238 -2.5567 0.8902 29 1 3.1564 -3.4356 0.0009 30 1 3.3591 -5.9709 0.8917 31 1 3.3594 -5.9716 -0.8882 32 1 1.3619 -7.3513 -0.7801 33 1 3.5497 -8.4015 0.8931 34 1 3.5511 -8.4022 -0.8868 35 1 2.0204 -10.1369 2.1227 36 1 0.8447 -8.9302 1.5386 37 1 -0.4262 -10.6670 0.4903 38 1 -0.1605 -11.1598 2.1775 39 1 2.2494 -13.8797 1.5801 40 1 2.5581 -12.1953 2.2661 41 1 3.5732 -10.9072 -1.0835 42 1 3.8272 -10.8736 0.6753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403416318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:58 Heat of formation + Delta-G solvation = -58.109948 kcal Electronic energy + Delta-G solvation = -19638.216046 eV Core-core repulsion = 16616.711192 eV Total energy + Delta-G solvation = -3021.504854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82260 -40.39752 -37.19363 -36.07060 -34.35318 -33.92081 -32.00347 -29.98114 -28.10893 -25.68900 -24.88006 -24.03538 -22.17071 -21.87071 -21.34214 -19.36523 -18.91578 -17.61408 -17.17787 -17.10463 -16.88445 -16.19152 -15.75272 -15.36985 -15.14478 -14.83065 -14.77709 -14.48296 -14.06497 -13.90728 -13.73100 -13.29867 -13.04021 -12.96118 -12.87696 -12.73335 -12.63932 -12.21972 -12.05315 -11.65444 -11.58704 -11.45639 -11.20962 -10.81596 -10.70106 -10.62384 -10.47039 -9.81423 -9.31098 -8.29339 -6.45889 1.43247 1.44490 1.57981 1.81037 2.30076 2.51348 2.89593 3.05627 3.35083 3.66843 3.88951 3.91885 4.00768 4.10402 4.18564 4.32992 4.40268 4.41138 4.52103 4.57092 4.70923 4.79639 4.84583 4.89135 4.92064 4.98883 5.07527 5.11808 5.24650 5.25833 5.32875 5.41816 5.42206 5.49665 5.54936 5.56690 5.69992 5.85377 6.03141 6.36202 6.65983 6.95906 7.23833 7.53842 8.83200 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.059292 B = 0.002656 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.126138 B =10540.057162 C =10827.645698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.710 5.710 11 C 0.491 3.509 12 O -0.593 6.593 13 C 0.058 3.942 14 N -0.688 5.688 15 C 0.069 3.931 16 C -0.076 4.076 17 H 0.063 0.937 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.145 4.145 21 H 0.099 0.901 22 C -0.179 4.179 23 C -0.153 4.153 24 H 0.110 0.890 25 C -0.078 4.078 26 H 0.268 0.732 27 H -0.014 1.014 28 H -0.015 1.015 29 H 0.409 0.591 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.343 0.657 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.645 -23.588 0.133 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.360 5.360 11 C 0.278 3.722 12 O -0.474 6.474 13 C -0.074 4.074 14 N -0.321 5.321 15 C -0.060 4.060 16 C -0.095 4.095 17 H 0.081 0.919 18 C -0.147 4.147 19 C -0.129 4.129 20 C -0.163 4.163 21 H 0.118 0.882 22 C -0.216 4.216 23 C -0.171 4.171 24 H 0.128 0.872 25 C -0.116 4.116 26 H 0.077 0.923 27 H 0.004 0.996 28 H 0.003 0.997 29 H 0.244 0.756 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.578 -23.634 0.822 25.515 hybrid contribution 0.230 1.087 -0.830 1.386 sum 9.808 -22.548 -0.008 24.588 Atomic orbital electron populations 1.70153 1.08324 1.28488 1.50102 1.26100 0.95796 1.04015 0.93910 0.85091 0.79103 0.77238 0.77652 1.17539 1.20460 1.20509 1.21660 0.94335 0.90553 1.52661 0.89723 1.18514 0.88742 0.84467 0.93922 1.46186 1.11163 1.05556 1.73137 1.21498 0.90012 0.84978 0.75673 1.90641 1.19418 1.85415 1.51901 1.21745 0.93942 0.87072 1.04689 1.60080 1.19938 1.00599 1.51453 1.22042 0.93797 0.88689 1.01451 1.21048 0.97125 0.93381 0.97970 0.91901 1.21159 0.98112 0.98144 0.97249 1.20523 0.98170 0.93165 1.01042 1.21337 0.91704 0.99149 1.04108 0.88233 1.22675 1.02432 1.01222 0.95241 1.22257 0.99558 0.99428 0.95902 0.87151 1.21011 0.96696 0.91144 1.02750 0.92272 0.99590 0.99726 0.75571 0.86245 0.89822 0.83836 0.90245 0.93689 0.92626 0.92121 0.92817 0.91368 0.88245 0.89051 0.90620 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.99 42.41 29.54 68.60 2.03 44.44 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.55 -30.27 9.28 25.60 0.24 -30.03 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.80 5.43 85.63 0.46 15.26 16 10 N -0.71 -29.91 5.55 -466.78 -2.59 -32.50 16 11 C 0.49 19.59 7.87 87.66 0.69 20.28 16 12 O -0.59 -29.79 16.20 -3.04 -0.05 -29.84 16 13 C 0.06 1.49 6.17 85.56 0.53 2.02 16 14 N -0.69 -17.80 5.44 -517.94 -2.82 -20.61 16 15 C 0.07 1.25 5.09 86.30 0.44 1.69 16 16 C -0.08 -1.36 2.33 -10.73 -0.03 -1.38 16 17 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 18 C -0.11 -2.20 4.92 30.05 0.15 -2.06 16 19 C -0.09 -1.71 5.89 29.64 0.17 -1.54 16 20 C -0.14 -2.29 5.91 -12.63 -0.07 -2.37 16 21 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 22 C -0.18 -2.48 9.50 29.59 0.28 -2.20 16 23 C -0.15 -2.18 6.29 -10.98 -0.07 -2.24 16 24 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 25 C -0.08 -1.09 5.12 30.46 0.16 -0.94 16 26 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 27 H -0.01 -0.87 8.14 -2.39 -0.02 -0.88 16 28 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 29 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 30 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.34 9.67 8.43 -89.70 -0.76 8.92 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 1.06 7.10 -2.39 -0.02 1.05 16 36 H 0.06 1.56 7.48 -2.39 -0.02 1.54 16 37 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 1.33 7.26 -2.38 -0.02 1.31 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.94 8.06 -2.39 -0.02 0.92 16 Total: -1.00 -70.91 338.94 -0.26 -71.17 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.52 Total: 26.75 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 3.41 Total: -2.96 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -5.12 Total: -109.56 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.05 Total: -29.84 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -70.91 -0.26 -71.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403416318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.056 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds