Wall clock time and date at job start Mon Mar 30 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00379 * 2 1 4 4 H 1.48500 * 109.46803 * 269.99898 * 3 2 1 5 5 H 1.48500 * 109.47148 * 29.99500 * 3 2 1 6 6 H 1.48501 * 109.47208 * 149.99782 * 3 2 1 7 7 C 1.37881 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99570 * 185.70657 * 7 2 1 9 9 C 1.50694 * 120.00121 * 5.70845 * 7 2 1 10 10 C 1.53002 * 115.55124 * 278.76797 * 9 7 2 11 11 N 1.46503 * 109.47092 * 294.83945 * 10 9 7 12 12 C 1.34771 * 119.99998 * 175.93215 * 11 10 9 13 13 O 1.21280 * 120.00235 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00239 * 179.97438 * 12 11 10 15 15 C 1.52988 * 109.47377 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47220 * 179.97438 * 15 14 12 17 17 H 1.08996 * 110.64620 * 308.15213 * 16 15 14 18 18 C 1.54594 * 110.72494 * 184.99805 * 16 15 14 19 19 C 1.54000 * 105.14175 * 219.68634 * 18 16 15 20 20 N 1.47898 * 107.05414 * 358.77685 * 19 18 16 21 21 C 1.48531 * 105.82462 * 25.33158 * 20 19 18 22 22 C 1.53000 * 117.49845 * 133.06019 * 9 7 2 23 23 C 1.52999 * 59.99991 * 252.50961 * 22 9 7 24 24 H 0.97002 * 119.99790 * 355.00344 * 1 2 3 25 25 H 1.08999 * 109.46923 * 54.83502 * 10 9 7 26 26 H 1.08999 * 109.47312 * 174.83616 * 10 9 7 27 27 H 0.97005 * 119.99916 * 355.93548 * 11 10 9 28 28 H 1.08999 * 109.46945 * 300.00927 * 14 12 11 29 29 H 1.08999 * 109.46793 * 59.99871 * 14 12 11 30 30 H 1.09000 * 109.46989 * 299.99950 * 15 14 12 31 31 H 1.08999 * 109.47442 * 60.00051 * 15 14 12 32 32 H 1.09001 * 110.31150 * 338.60444 * 18 16 15 33 33 H 1.08999 * 110.30605 * 100.76707 * 18 16 15 34 34 H 1.09001 * 109.91610 * 118.12573 * 19 18 16 35 35 H 1.08994 * 109.91424 * 239.22559 * 19 18 16 36 36 H 1.00904 * 110.99795 * 264.81693 * 20 19 18 37 37 H 1.08999 * 110.67065 * 202.35845 * 21 20 19 38 38 H 1.08997 * 110.66655 * 79.22758 * 21 20 19 39 39 H 1.08996 * 117.49797 * 359.97438 * 22 9 7 40 40 H 1.09001 * 117.49553 * 145.01863 * 22 9 7 41 41 H 1.09000 * 117.50197 * 252.51193 * 23 22 9 42 42 H 1.08997 * 117.50093 * 107.48923 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0805 -1.1964 0.0935 9 6 1.2565 -2.4960 -0.1287 10 6 0.6297 -3.0278 1.1617 11 7 1.6889 -3.3688 2.1147 12 6 1.3700 -3.7822 3.3572 13 8 0.2062 -3.8723 3.6863 14 6 2.4595 -4.1335 4.3374 15 6 1.8320 -4.5696 5.6627 16 6 2.9381 -4.9269 6.6576 17 1 3.6368 -5.6378 6.2166 18 6 2.3366 -5.4906 7.9654 19 6 3.1926 -4.8876 9.0946 20 7 4.2349 -4.0575 8.4527 21 6 3.6767 -3.6521 7.1373 22 6 1.7918 -3.5219 -1.1297 23 6 0.5055 -2.7524 -1.4368 24 1 -0.4850 0.8369 0.0732 25 1 -0.0157 -2.2633 1.5941 26 1 0.0405 -3.9176 0.9396 27 1 2.6198 -3.2970 1.8514 28 1 3.0613 -4.9483 3.9350 29 1 3.0929 -3.2622 4.5041 30 1 1.2300 -3.7549 6.0652 31 1 1.1988 -5.4410 5.4956 32 1 1.2977 -5.1776 8.0697 33 1 2.4076 -6.5783 7.9764 34 1 2.5710 -4.2684 9.7415 35 1 3.6547 -5.6850 9.6764 36 1 5.0914 -4.5782 8.3371 37 1 4.4761 -3.3873 6.4453 38 1 2.9780 -2.8238 7.2547 39 1 2.6846 -3.2550 -1.6950 40 1 1.6976 -4.5760 -0.8689 41 1 -0.4349 -3.3003 -1.3781 42 1 0.5524 -1.9795 -2.2039 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404100144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:16 Heat of formation + Delta-G solvation = -33.672948 kcal Electronic energy + Delta-G solvation = -20116.857518 eV Core-core repulsion = 17096.412332 eV Total energy + Delta-G solvation = -3020.445186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.40833 -38.59262 -36.70954 -33.52412 -33.22807 -32.00502 -29.79917 -28.55341 -26.25439 -25.23244 -23.29472 -21.72168 -21.21623 -20.10633 -19.64860 -19.20094 -16.97623 -16.54692 -16.00926 -15.56573 -14.92786 -14.68412 -14.59562 -14.29221 -13.90384 -13.81491 -13.18688 -12.83713 -12.56680 -12.48680 -12.09256 -11.73772 -11.58685 -11.56534 -11.23772 -11.03268 -10.96652 -10.89979 -10.76590 -10.56714 -10.55585 -10.30437 -9.66998 -9.23721 -8.99346 -8.83594 -8.53837 -8.29010 -8.05306 -6.09251 -4.18117 3.24900 3.26441 3.33039 3.33903 3.86024 4.07463 4.34279 4.49684 4.60052 4.81892 5.00722 5.11702 5.19512 5.25475 5.29506 5.34637 5.35981 5.49067 5.65133 5.70492 5.76114 5.81092 5.89457 6.00254 6.04256 6.21136 6.30667 6.34834 6.45950 6.52133 6.54911 6.65462 6.89554 7.06077 7.11847 7.29905 7.42063 7.47717 7.80397 8.32039 8.33398 8.82426 8.93555 9.48895 10.98768 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.003988 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.926684 B = 7019.517428 C = 7754.476402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.162 3.838 11 N -0.704 5.704 12 C 0.501 3.499 13 O -0.560 6.560 14 C -0.141 4.141 15 C -0.089 4.089 16 C -0.124 4.124 17 H 0.074 0.926 18 C -0.149 4.149 19 C 0.041 3.959 20 N -0.678 5.678 21 C 0.044 3.956 22 C -0.211 4.211 23 C -0.153 4.153 24 H 0.262 0.738 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.399 0.601 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.335 0.665 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.517 -9.872 11.617 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.029 3.971 10 C 0.039 3.961 11 N -0.352 5.352 12 C 0.287 3.713 13 O -0.439 6.439 14 C -0.181 4.181 15 C -0.128 4.128 16 C -0.144 4.144 17 H 0.093 0.907 18 C -0.188 4.188 19 C -0.089 4.089 20 N -0.304 5.304 21 C -0.085 4.085 22 C -0.248 4.248 23 C -0.191 4.191 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.232 0.768 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.381 -9.150 12.154 16.497 hybrid contribution 0.833 0.127 -0.809 1.168 sum 7.214 -9.023 11.345 16.191 Atomic orbital electron populations 1.69966 1.05911 1.26978 1.48174 1.24988 0.94802 0.98963 0.94284 0.86629 0.79897 0.83491 0.78134 1.20616 1.21219 1.19873 1.20348 0.92699 0.88576 1.52217 0.92183 1.19038 0.98122 0.93658 0.86240 1.20966 0.88583 0.97240 0.89287 1.45990 1.11184 1.65652 1.12405 1.20558 0.90182 0.77642 0.82908 1.90651 1.20726 1.54576 1.77980 1.21679 0.98059 1.02950 0.95385 1.21258 0.96522 1.02313 0.92668 1.22795 0.98025 0.97995 0.95618 0.90728 1.22860 1.00881 1.00450 0.94655 1.22730 0.93726 0.95619 0.96793 1.62716 1.05782 1.41375 1.20534 1.23276 0.98800 0.97130 0.89341 1.22992 0.98208 0.95642 1.07945 1.22523 0.92870 1.01461 1.02281 0.92800 0.90550 0.94925 0.76781 0.89575 0.89134 0.90921 0.91289 0.90792 0.91588 0.90710 0.91855 0.85027 0.90555 0.89807 0.90355 0.91634 0.91665 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.34 13.07 55.43 0.72 -23.61 16 2 C 0.07 1.96 5.42 -17.82 -0.10 1.86 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.50 -12.82 8.68 -34.44 -0.30 -13.12 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.03 0.70 1.30 -155.66 -0.20 0.50 16 10 C 0.16 3.70 5.50 -4.04 -0.02 3.68 16 11 N -0.70 -13.52 5.46 -60.29 -0.33 -13.84 16 12 C 0.50 9.18 7.83 -10.99 -0.09 9.09 16 13 O -0.56 -12.44 15.98 5.56 0.09 -12.35 16 14 C -0.14 -1.80 5.59 -27.89 -0.16 -1.95 16 15 C -0.09 -1.08 3.88 -26.73 -0.10 -1.19 16 16 C -0.12 -1.18 3.04 -88.75 -0.27 -1.45 16 17 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 18 C -0.15 -1.33 6.51 -25.37 -0.17 -1.50 16 19 C 0.04 0.35 7.52 -2.75 -0.02 0.33 16 20 N -0.68 -6.36 7.51 -110.09 -0.83 -7.18 16 21 C 0.04 0.43 6.40 -1.90 -0.01 0.42 16 22 C -0.21 -4.31 9.96 -26.73 -0.27 -4.58 16 23 C -0.15 -3.47 9.64 -26.73 -0.26 -3.73 16 24 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 25 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 26 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.40 6.87 8.44 -40.82 -0.34 6.52 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.05 7.66 -51.93 -0.40 0.65 16 30 H 0.07 1.00 7.95 -51.93 -0.41 0.59 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.33 2.60 8.92 -39.29 -0.35 2.25 16 37 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 38 H 0.08 0.92 7.94 -51.93 -0.41 0.51 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -29.63 344.77 -9.49 -39.12 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.36 Total: 8.79 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.96 Total: -11.64 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.43 Total: -44.64 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.63 -9.49 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404100144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.449 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds