Wall clock time and date at job start Mon Mar 30 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00379 * 2 1 4 4 H 1.48500 * 109.46803 * 269.99898 * 3 2 1 5 5 H 1.48500 * 109.47148 * 29.99500 * 3 2 1 6 6 H 1.48501 * 109.47208 * 149.99782 * 3 2 1 7 7 C 1.37881 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99570 * 185.70657 * 7 2 1 9 9 C 1.50694 * 120.00121 * 5.70845 * 7 2 1 10 10 C 1.53002 * 115.55124 * 278.76797 * 9 7 2 11 11 N 1.46503 * 109.47092 * 294.83945 * 10 9 7 12 12 C 1.34771 * 119.99998 * 175.93215 * 11 10 9 13 13 O 1.21280 * 120.00235 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00239 * 179.97438 * 12 11 10 15 15 C 1.52988 * 109.47377 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47220 * 179.97438 * 15 14 12 17 17 H 1.08996 * 110.64620 * 308.15213 * 16 15 14 18 18 C 1.54594 * 110.72494 * 184.99805 * 16 15 14 19 19 C 1.54000 * 105.14175 * 219.68634 * 18 16 15 20 20 N 1.47898 * 107.05414 * 358.77685 * 19 18 16 21 21 C 1.48531 * 105.82462 * 25.33158 * 20 19 18 22 22 C 1.53000 * 117.49845 * 133.06019 * 9 7 2 23 23 C 1.52999 * 59.99991 * 252.50961 * 22 9 7 24 24 H 0.97002 * 119.99790 * 355.00344 * 1 2 3 25 25 H 1.08999 * 109.46923 * 54.83502 * 10 9 7 26 26 H 1.08999 * 109.47312 * 174.83616 * 10 9 7 27 27 H 0.97005 * 119.99916 * 355.93548 * 11 10 9 28 28 H 1.08999 * 109.46945 * 300.00927 * 14 12 11 29 29 H 1.08999 * 109.46793 * 59.99871 * 14 12 11 30 30 H 1.09000 * 109.46989 * 299.99950 * 15 14 12 31 31 H 1.08999 * 109.47442 * 60.00051 * 15 14 12 32 32 H 1.09001 * 110.31150 * 338.60444 * 18 16 15 33 33 H 1.08999 * 110.30605 * 100.76707 * 18 16 15 34 34 H 1.09001 * 109.91610 * 118.12573 * 19 18 16 35 35 H 1.08994 * 109.91424 * 239.22559 * 19 18 16 36 36 H 1.00904 * 110.99795 * 264.81693 * 20 19 18 37 37 H 1.08999 * 110.67065 * 202.35845 * 21 20 19 38 38 H 1.08997 * 110.66655 * 79.22758 * 21 20 19 39 39 H 1.08996 * 117.49797 * 359.97438 * 22 9 7 40 40 H 1.09001 * 117.49553 * 145.01863 * 22 9 7 41 41 H 1.09000 * 117.50197 * 252.51193 * 23 22 9 42 42 H 1.08997 * 117.50093 * 107.48923 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0805 -1.1964 0.0935 9 6 1.2565 -2.4960 -0.1287 10 6 0.6297 -3.0278 1.1617 11 7 1.6889 -3.3688 2.1147 12 6 1.3700 -3.7822 3.3572 13 8 0.2062 -3.8723 3.6863 14 6 2.4595 -4.1335 4.3374 15 6 1.8320 -4.5696 5.6627 16 6 2.9381 -4.9269 6.6576 17 1 3.6368 -5.6378 6.2166 18 6 2.3366 -5.4906 7.9654 19 6 3.1926 -4.8876 9.0946 20 7 4.2349 -4.0575 8.4527 21 6 3.6767 -3.6521 7.1373 22 6 1.7918 -3.5219 -1.1297 23 6 0.5055 -2.7524 -1.4368 24 1 -0.4850 0.8369 0.0732 25 1 -0.0157 -2.2633 1.5941 26 1 0.0405 -3.9176 0.9396 27 1 2.6198 -3.2970 1.8514 28 1 3.0613 -4.9483 3.9350 29 1 3.0929 -3.2622 4.5041 30 1 1.2300 -3.7549 6.0652 31 1 1.1988 -5.4410 5.4956 32 1 1.2977 -5.1776 8.0697 33 1 2.4076 -6.5783 7.9764 34 1 2.5710 -4.2684 9.7415 35 1 3.6547 -5.6850 9.6764 36 1 5.0914 -4.5782 8.3371 37 1 4.4761 -3.3873 6.4453 38 1 2.9780 -2.8238 7.2547 39 1 2.6846 -3.2550 -1.6950 40 1 1.6976 -4.5760 -0.8689 41 1 -0.4349 -3.3003 -1.3781 42 1 0.5524 -1.9795 -2.2039 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404100144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:15 Heat of formation + Delta-G solvation = -53.750754 kcal Electronic energy + Delta-G solvation = -20117.728157 eV Core-core repulsion = 17096.412332 eV Total energy + Delta-G solvation = -3021.315825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.73928 -39.57786 -38.45870 -34.89045 -34.51689 -33.98850 -30.62380 -29.51491 -27.93790 -27.02130 -24.38616 -22.98108 -22.47698 -21.31984 -20.90296 -20.84680 -18.38160 -17.68239 -17.47636 -16.79328 -16.62765 -16.44895 -15.67062 -15.45997 -15.34862 -14.73489 -14.61608 -14.27425 -14.02511 -13.52227 -13.44185 -13.21731 -12.95709 -12.92843 -12.78565 -12.38643 -12.34711 -12.17939 -12.05265 -11.82505 -11.58200 -11.48164 -11.36064 -10.88986 -10.81783 -10.47283 -10.04712 -9.78564 -9.54238 -8.10293 -6.23638 1.42182 1.44476 1.52586 1.80270 2.40636 2.46983 3.18356 3.32927 3.49722 3.71253 3.81528 3.96944 4.09556 4.22491 4.25854 4.37165 4.51137 4.54998 4.55414 4.65598 4.69622 4.70858 4.74946 4.83470 4.98547 4.99799 5.06408 5.08786 5.09982 5.17771 5.26352 5.29552 5.45906 5.58337 5.61209 5.71332 5.79022 5.81313 6.36306 6.52358 6.81142 6.86288 7.45567 7.47032 8.97323 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.003988 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.926684 B = 7019.517428 C = 7754.476402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.066 0.934 9 C 0.007 3.993 10 C 0.178 3.822 11 N -0.700 5.700 12 C 0.495 3.505 13 O -0.605 6.605 14 C -0.127 4.127 15 C -0.084 4.084 16 C -0.114 4.114 17 H 0.094 0.906 18 C -0.149 4.149 19 C 0.042 3.958 20 N -0.687 5.687 21 C 0.043 3.957 22 C -0.173 4.173 23 C -0.167 4.167 24 H 0.258 0.742 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.411 0.589 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.346 0.654 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.304 -11.099 12.074 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.541 4.541 8 H 0.084 0.916 9 C 0.006 3.994 10 C 0.053 3.947 11 N -0.350 5.350 12 C 0.284 3.716 13 O -0.487 6.487 14 C -0.167 4.167 15 C -0.123 4.123 16 C -0.134 4.134 17 H 0.112 0.888 18 C -0.189 4.189 19 C -0.088 4.088 20 N -0.315 5.315 21 C -0.086 4.086 22 C -0.210 4.210 23 C -0.206 4.206 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.247 0.753 28 H 0.139 0.861 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.163 0.837 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.223 -10.391 12.612 18.764 hybrid contribution -0.061 0.478 -0.938 1.055 sum 9.162 -9.913 11.674 17.846 Atomic orbital electron populations 1.70105 1.07379 1.27290 1.49969 1.25721 0.95417 1.02155 0.94411 0.85696 0.78996 0.79696 0.78050 1.20373 1.21921 1.18577 1.20688 0.93062 0.89511 1.50824 0.91638 1.19055 0.99299 0.94358 0.86677 1.20508 0.88985 0.95561 0.89624 1.45905 1.10956 1.65678 1.12412 1.21590 0.90910 0.76129 0.83000 1.90634 1.23189 1.56249 1.78660 1.21708 0.96330 1.04869 0.93775 1.21183 0.97097 1.00887 0.93093 1.22713 0.97212 0.98359 0.95075 0.88782 1.22861 1.00182 1.01258 0.94551 1.22729 0.93546 0.95875 0.96634 1.62660 1.06458 1.42069 1.20275 1.23233 0.98845 0.96585 0.89959 1.22988 0.96963 0.96147 1.04935 1.22474 0.94479 1.01990 1.01610 0.93307 0.95335 0.95105 0.75341 0.86131 0.87246 0.93373 0.92490 0.92144 0.90266 0.91659 0.90008 0.83739 0.89253 0.91757 0.89361 0.89123 0.91260 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.95 13.07 21.45 0.28 -51.67 16 2 C 0.02 1.25 5.42 84.66 0.46 1.70 16 3 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.50 -25.45 8.68 25.60 0.22 -25.23 16 8 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.01 0.32 1.30 -52.93 -0.07 0.25 16 10 C 0.18 8.20 5.50 86.38 0.48 8.68 16 11 N -0.70 -26.27 5.46 -463.06 -2.53 -28.80 16 12 C 0.50 17.83 7.83 87.66 0.69 18.52 16 13 O -0.60 -27.49 15.98 -3.03 -0.05 -27.54 16 14 C -0.13 -2.95 5.59 29.85 0.17 -2.79 16 15 C -0.08 -1.95 3.88 30.59 0.12 -1.83 16 16 C -0.11 -1.90 3.04 -9.58 -0.03 -1.93 16 17 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 18 C -0.15 -2.41 6.51 31.47 0.20 -2.21 16 19 C 0.04 0.64 7.52 86.45 0.65 1.29 16 20 N -0.69 -11.37 7.51 -502.20 -3.77 -15.15 16 21 C 0.04 0.76 6.40 86.65 0.55 1.31 16 22 C -0.17 -6.69 9.96 30.59 0.30 -6.39 16 23 C -0.17 -7.56 9.64 30.59 0.29 -7.27 16 24 H 0.26 14.29 8.32 -92.71 -0.77 13.51 16 25 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 27 H 0.41 13.28 8.44 -92.70 -0.78 12.49 16 28 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.11 2.20 7.66 -2.39 -0.02 2.18 16 30 H 0.05 1.34 7.95 -2.39 -0.02 1.33 16 31 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 32 H 0.06 1.13 7.85 -2.39 -0.02 1.11 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.35 4.37 8.92 -89.69 -0.80 3.57 16 37 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 38 H 0.06 1.37 7.94 -2.39 -0.02 1.35 16 39 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -65.43 344.77 -0.59 -66.02 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.58 Total: 28.87 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 4.04 Total: -15.88 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -6.02 Total: -95.61 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -65.43 -0.59 -66.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404100144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.266 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds