Wall clock time and date at job start Mon Mar 30 2020 05:36:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 120.00107 * 2 1
4 4 H 1.48506 * 109.47013 * 240.00107 * 3 2 1
5 5 H 1.48498 * 109.47203 * 359.97438 * 3 2 1
6 6 H 1.48500 * 109.46879 * 120.00354 * 3 2 1
7 7 C 1.37883 * 119.99522 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99493 * 173.55431 * 7 2 1
9 9 C 1.50697 * 119.99998 * 353.55577 * 7 2 1
10 10 C 1.53001 * 115.55074 * 85.40599 * 9 7 2
11 11 N 1.46499 * 109.46960 * 65.14072 * 10 9 7
12 12 C 1.34777 * 120.00120 * 178.28225 * 11 10 9
13 13 O 1.21281 * 119.99622 * 359.97438 * 12 11 10
14 14 C 1.50700 * 120.00482 * 179.97438 * 12 11 10
15 15 C 1.52993 * 109.47238 * 179.97438 * 14 12 11
16 16 C 1.53005 * 109.47012 * 180.02562 * 15 14 12
17 17 H 1.08999 * 110.27509 * 55.63643 * 16 15 14
18 18 C 1.54602 * 110.38990 * 177.78346 * 16 15 14
19 19 C 1.54939 * 102.91730 * 140.91579 * 18 16 15
20 20 N 1.48806 * 103.35200 * 322.68802 * 19 18 16
21 21 C 1.47903 * 105.67727 * 38.97641 * 20 19 18
22 22 C 1.53001 * 117.49539 * 231.07209 * 9 7 2
23 23 C 1.52996 * 117.49788 * 299.73141 * 9 7 2
24 24 H 0.96995 * 119.99850 * 5.06424 * 1 2 3
25 25 H 1.08990 * 109.46829 * 305.14136 * 10 9 7
26 26 H 1.08997 * 109.47133 * 185.13963 * 10 9 7
27 27 H 0.97005 * 120.00118 * 358.27284 * 11 10 9
28 28 H 1.09003 * 109.46495 * 59.99952 * 14 12 11
29 29 H 1.08999 * 109.46752 * 300.00219 * 14 12 11
30 30 H 1.08997 * 109.47427 * 60.00062 * 15 14 12
31 31 H 1.08999 * 109.47728 * 299.99989 * 15 14 12
32 32 H 1.09002 * 110.71979 * 259.27247 * 18 16 15
33 33 H 1.08995 * 110.72501 * 22.38223 * 18 16 15
34 34 H 1.09002 * 110.66725 * 81.02226 * 19 18 16
35 35 H 1.09004 * 110.66034 * 204.14770 * 19 18 16
36 36 H 1.00905 * 110.95421 * 278.57634 * 20 19 18
37 37 H 1.08998 * 109.91627 * 215.45315 * 21 20 19
38 38 H 1.09000 * 109.91460 * 94.36050 * 21 20 19
39 39 H 1.09006 * 117.49887 * 215.00330 * 22 9 7
40 40 H 1.09005 * 117.50205 * 0.02737 * 22 9 7
41 41 H 1.08993 * 117.50222 * 359.97438 * 23 9 7
42 42 H 1.09000 * 117.49529 * 145.00350 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2126
5 1 1.2842 2.7464 -0.0006
6 1 3.1030 1.6962 1.2125
7 6 2.0045 -1.1942 0.0005
8 1 3.0793 -1.1972 -0.1045
9 6 1.2580 -2.4950 0.1476
10 6 0.7020 -3.0870 -1.1491
11 7 1.8110 -3.4601 -2.0305
12 6 1.5599 -4.0374 -3.2222
13 8 0.4157 -4.2484 -3.5646
14 6 2.7007 -4.4208 -4.1292
15 6 2.1458 -5.0527 -5.4073
16 6 3.3041 -5.4425 -6.3279
17 1 3.9985 -6.0993 -5.8039
18 6 2.7695 -6.1342 -7.6030
19 6 3.6871 -5.5673 -8.7152
20 7 3.8947 -4.1529 -8.3018
21 6 4.0349 -4.1833 -6.8297
22 6 1.7469 -3.4728 1.2180
23 6 0.4417 -2.7005 1.4251
24 1 -0.4850 0.8367 -0.0742
25 1 0.0754 -2.3470 -1.6468
26 1 0.1073 -3.9710 -0.9191
27 1 2.7262 -3.2916 -1.7565
28 1 3.3446 -5.1377 -3.6197
29 1 3.2771 -3.5314 -4.3837
30 1 1.5016 -4.3362 -5.9168
31 1 1.5697 -5.9422 -5.1525
32 1 2.8769 -7.2164 -7.5285
33 1 1.7292 -5.8626 -7.7817
34 1 4.6369 -6.1015 -8.7399
35 1 3.1916 -5.6165 -9.6849
36 1 3.1133 -3.5776 -8.5788
37 1 3.5813 -3.2926 -6.3951
38 1 5.0894 -4.2330 -6.5582
39 1 1.6724 -4.5380 0.9984
40 1 2.6082 -3.1751 1.8161
41 1 0.4448 -1.8950 2.1594
42 1 -0.4916 -3.2574 1.3419
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000404100145.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:36:20
Heat of formation + Delta-G solvation = -33.330179 kcal
Electronic energy + Delta-G solvation = -20134.626481 eV
Core-core repulsion = 17114.196159 eV
Total energy + Delta-G solvation = -3020.430323 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.46871 -38.59625 -36.70822 -33.48701 -33.25781 -31.99406 -29.80764 -28.50318
-26.27730 -25.24783 -23.42604 -21.79782 -21.20445 -19.93640 -19.64108 -19.17102
-17.00889 -16.42537 -16.02567 -15.79978 -15.02328 -14.89242 -14.64662 -14.07718
-13.86998 -13.46399 -13.39192 -12.92426 -12.66147 -12.27405 -12.06834 -11.81111
-11.64248 -11.49827 -11.33799 -11.01972 -10.97064 -10.93620 -10.78351 -10.59182
-10.56648 -10.29480 -9.67867 -9.27070 -8.99476 -8.82530 -8.52134 -8.29046
-8.08295 -6.10094 -4.19175 3.23000 3.25201 3.31513 3.32623 3.85895
4.06469 4.33257 4.48718 4.58262 4.84321 5.05772 5.12783 5.17782
5.21734 5.26490 5.32125 5.35790 5.51805 5.63941 5.66310 5.72142
5.77537 5.92650 5.98838 6.03284 6.18731 6.29482 6.31550 6.44936
6.54762 6.55376 6.66822 6.87706 7.07032 7.12861 7.28532 7.41378
7.46637 7.78810 8.30604 8.32026 8.81265 8.90411 9.47793 10.97726
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.022619 B = 0.003969 C = 0.003585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1237.620983 B = 7053.437165 C = 7807.520402
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.874 5.874
2 C 0.074 3.926
3 Si 0.891 3.109
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.503 4.503
8 H 0.060 0.940
9 C 0.028 3.972
10 C 0.163 3.837
11 N -0.704 5.704
12 C 0.501 3.499
13 O -0.561 6.561
14 C -0.142 4.142
15 C -0.092 4.092
16 C -0.119 4.119
17 H 0.077 0.923
18 C -0.154 4.154
19 C 0.041 3.959
20 N -0.677 5.677
21 C 0.041 3.959
22 C -0.211 4.211
23 C -0.148 4.148
24 H 0.263 0.737
25 H 0.071 0.929
26 H 0.035 0.965
27 H 0.400 0.600
28 H 0.088 0.912
29 H 0.091 0.909
30 H 0.068 0.932
31 H 0.069 0.931
32 H 0.072 0.928
33 H 0.070 0.930
34 H 0.078 0.922
35 H 0.072 0.928
36 H 0.337 0.663
37 H 0.071 0.929
38 H 0.075 0.925
39 H 0.065 0.935
40 H 0.078 0.922
41 H 0.083 0.917
42 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.125 -9.887 -11.309 16.626
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.510 5.510
2 C -0.130 4.130
3 Si 0.718 3.282
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.540 4.540
8 H 0.078 0.922
9 C 0.028 3.972
10 C 0.040 3.960
11 N -0.353 5.353
12 C 0.287 3.713
13 O -0.441 6.441
14 C -0.182 4.182
15 C -0.130 4.130
16 C -0.139 4.139
17 H 0.096 0.904
18 C -0.193 4.193
19 C -0.089 4.089
20 N -0.303 5.303
21 C -0.089 4.089
22 C -0.248 4.248
23 C -0.187 4.187
24 H 0.072 0.928
25 H 0.089 0.911
26 H 0.054 0.946
27 H 0.234 0.766
28 H 0.106 0.894
29 H 0.109 0.891
30 H 0.087 0.913
31 H 0.088 0.912
32 H 0.090 0.910
33 H 0.088 0.912
34 H 0.096 0.904
35 H 0.091 0.909
36 H 0.152 0.848
37 H 0.090 0.910
38 H 0.094 0.906
39 H 0.083 0.917
40 H 0.097 0.903
41 H 0.102 0.898
42 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 6.852 -9.814 -11.638 16.694
hybrid contribution -0.128 0.864 0.612 1.067
sum 6.724 -8.950 -11.026 15.712
Atomic orbital electron populations
1.69967 1.05917 1.27080 1.48056 1.24991 0.94805 0.98965 0.94253
0.86686 0.79662 0.83143 0.78662 1.20228 1.21255 1.20162 1.20306
0.92801 0.88641 1.52258 0.92228 1.19026 0.98554 0.93902 0.85750
1.20974 0.87446 0.96810 0.90810 1.46015 1.11387 1.59965 1.17888
1.20578 0.90422 0.78066 0.82274 1.90649 1.23064 1.55854 1.74532
1.21709 0.97718 1.02490 0.96291 1.21358 0.96460 1.01279 0.93908
1.22483 0.97638 0.97557 0.96245 0.90417 1.23173 1.00123 1.00804
0.95190 1.23160 0.98987 0.89205 0.97536 1.62866 1.46620 1.09431
1.11407 1.22906 1.00747 0.97576 0.87680 1.23025 0.98688 0.95636
1.07471 1.22492 0.92257 1.01080 1.02832 0.92759 0.91068 0.94623
0.76630 0.89372 0.89099 0.91340 0.91240 0.90960 0.91160 0.90362
0.90948 0.84768 0.91007 0.90632 0.91688 0.90349 0.89818 0.91700
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.21 12.91 55.43 0.72 -23.50 16
2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16
3 Si 0.89 20.43 29.55 -169.99 -5.02 15.41 16
4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
6 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16
7 C -0.50 -12.83 8.63 -34.44 -0.30 -13.12 16
8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16
9 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16
10 C 0.16 3.70 5.50 -4.04 -0.02 3.67 16
11 N -0.70 -13.46 5.47 -60.30 -0.33 -13.79 16
12 C 0.50 9.08 7.83 -10.99 -0.09 9.00 16
13 O -0.56 -12.33 15.98 5.56 0.09 -12.24 16
14 C -0.14 -1.81 5.52 -27.89 -0.15 -1.96 16
15 C -0.09 -1.10 3.70 -26.73 -0.10 -1.20 16
16 C -0.12 -1.14 3.02 -89.26 -0.27 -1.41 16
17 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
18 C -0.15 -1.33 6.61 -24.87 -0.16 -1.49 16
19 C 0.04 0.34 7.55 -1.74 -0.01 0.32 16
20 N -0.68 -6.56 7.54 -109.87 -0.83 -7.38 16
21 C 0.04 0.40 6.70 -2.75 -0.02 0.38 16
22 C -0.21 -4.35 9.96 -26.69 -0.27 -4.62 16
23 C -0.15 -3.39 9.42 -26.69 -0.25 -3.64 16
24 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16
25 H 0.07 1.87 8.14 -51.93 -0.42 1.44 16
26 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16
27 H 0.40 6.92 8.37 -40.82 -0.34 6.58 16
28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.09 1.05 6.88 -51.93 -0.36 0.69 16
30 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16
31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16
32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.07 0.64 7.87 -51.93 -0.41 0.24 16
34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.34 3.03 8.92 -39.29 -0.35 2.68 16
37 H 0.07 0.73 6.73 -51.93 -0.35 0.38 16
38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16
41 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16
42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16
LS Contribution 342.74 15.07 5.17 5.17
Total: -1.00 -29.40 342.74 -9.43 -38.82
By element:
Atomic # 1 Polarization: 16.55 SS G_CDS: -7.26 Total: 9.28 kcal
Atomic # 6 Polarization: -9.81 SS G_CDS: -1.95 Total: -11.76 kcal
Atomic # 7 Polarization: -44.24 SS G_CDS: -0.44 Total: -44.68 kcal
Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal
Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal
Total LS contribution 5.17 Total: 5.17 kcal
Total: -29.40 -9.43 -38.82 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000404100145.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.493 kcal
(2) G-P(sol) polarization free energy of solvation -29.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.902 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.330 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds