Wall clock time and date at job start Mon Mar 30 2020 05:36:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 120.00107 * 2 1
4 4 H 1.48506 * 109.47013 * 240.00107 * 3 2 1
5 5 H 1.48498 * 109.47203 * 359.97438 * 3 2 1
6 6 H 1.48500 * 109.46879 * 120.00354 * 3 2 1
7 7 C 1.37883 * 119.99522 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99493 * 173.55431 * 7 2 1
9 9 C 1.50697 * 119.99998 * 353.55577 * 7 2 1
10 10 C 1.53001 * 115.55074 * 85.40599 * 9 7 2
11 11 N 1.46499 * 109.46960 * 65.14072 * 10 9 7
12 12 C 1.34777 * 120.00120 * 178.28225 * 11 10 9
13 13 O 1.21281 * 119.99622 * 359.97438 * 12 11 10
14 14 C 1.50700 * 120.00482 * 179.97438 * 12 11 10
15 15 C 1.52993 * 109.47238 * 179.97438 * 14 12 11
16 16 C 1.53005 * 109.47012 * 180.02562 * 15 14 12
17 17 H 1.08999 * 110.27509 * 55.63643 * 16 15 14
18 18 C 1.54602 * 110.38990 * 177.78346 * 16 15 14
19 19 C 1.54939 * 102.91730 * 140.91579 * 18 16 15
20 20 N 1.48806 * 103.35200 * 322.68802 * 19 18 16
21 21 C 1.47903 * 105.67727 * 38.97641 * 20 19 18
22 22 C 1.53001 * 117.49539 * 231.07209 * 9 7 2
23 23 C 1.52996 * 117.49788 * 299.73141 * 9 7 2
24 24 H 0.96995 * 119.99850 * 5.06424 * 1 2 3
25 25 H 1.08990 * 109.46829 * 305.14136 * 10 9 7
26 26 H 1.08997 * 109.47133 * 185.13963 * 10 9 7
27 27 H 0.97005 * 120.00118 * 358.27284 * 11 10 9
28 28 H 1.09003 * 109.46495 * 59.99952 * 14 12 11
29 29 H 1.08999 * 109.46752 * 300.00219 * 14 12 11
30 30 H 1.08997 * 109.47427 * 60.00062 * 15 14 12
31 31 H 1.08999 * 109.47728 * 299.99989 * 15 14 12
32 32 H 1.09002 * 110.71979 * 259.27247 * 18 16 15
33 33 H 1.08995 * 110.72501 * 22.38223 * 18 16 15
34 34 H 1.09002 * 110.66725 * 81.02226 * 19 18 16
35 35 H 1.09004 * 110.66034 * 204.14770 * 19 18 16
36 36 H 1.00905 * 110.95421 * 278.57634 * 20 19 18
37 37 H 1.08998 * 109.91627 * 215.45315 * 21 20 19
38 38 H 1.09000 * 109.91460 * 94.36050 * 21 20 19
39 39 H 1.09006 * 117.49887 * 215.00330 * 22 9 7
40 40 H 1.09005 * 117.50205 * 0.02737 * 22 9 7
41 41 H 1.08993 * 117.50222 * 359.97438 * 23 9 7
42 42 H 1.09000 * 117.49529 * 145.00350 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2126
5 1 1.2842 2.7464 -0.0006
6 1 3.1030 1.6962 1.2125
7 6 2.0045 -1.1942 0.0005
8 1 3.0793 -1.1972 -0.1045
9 6 1.2580 -2.4950 0.1476
10 6 0.7020 -3.0870 -1.1491
11 7 1.8110 -3.4601 -2.0305
12 6 1.5599 -4.0374 -3.2222
13 8 0.4157 -4.2484 -3.5646
14 6 2.7007 -4.4208 -4.1292
15 6 2.1458 -5.0527 -5.4073
16 6 3.3041 -5.4425 -6.3279
17 1 3.9985 -6.0993 -5.8039
18 6 2.7695 -6.1342 -7.6030
19 6 3.6871 -5.5673 -8.7152
20 7 3.8947 -4.1529 -8.3018
21 6 4.0349 -4.1833 -6.8297
22 6 1.7469 -3.4728 1.2180
23 6 0.4417 -2.7005 1.4251
24 1 -0.4850 0.8367 -0.0742
25 1 0.0754 -2.3470 -1.6468
26 1 0.1073 -3.9710 -0.9191
27 1 2.7262 -3.2916 -1.7565
28 1 3.3446 -5.1377 -3.6197
29 1 3.2771 -3.5314 -4.3837
30 1 1.5016 -4.3362 -5.9168
31 1 1.5697 -5.9422 -5.1525
32 1 2.8769 -7.2164 -7.5285
33 1 1.7292 -5.8626 -7.7817
34 1 4.6369 -6.1015 -8.7399
35 1 3.1916 -5.6165 -9.6849
36 1 3.1133 -3.5776 -8.5788
37 1 3.5813 -3.2926 -6.3951
38 1 5.0894 -4.2330 -6.5582
39 1 1.6724 -4.5380 0.9984
40 1 2.6082 -3.1751 1.8161
41 1 0.4448 -1.8950 2.1594
42 1 -0.4916 -3.2574 1.3419
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000404100145.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:36:19
Heat of formation + Delta-G solvation = -53.088001 kcal
Electronic energy + Delta-G solvation = -20135.483245 eV
Core-core repulsion = 17114.196159 eV
Total energy + Delta-G solvation = -3021.287086 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.78051 -39.59321 -38.46062 -34.91604 -34.47263 -33.96958 -30.62186 -29.46977
-27.94610 -27.02700 -24.50922 -22.98486 -22.52428 -21.35161 -20.93395 -20.57405
-18.38462 -17.84197 -17.22807 -16.83513 -16.70647 -16.43309 -16.14560 -15.53391
-14.93594 -14.74972 -14.44430 -14.30625 -14.13628 -13.57034 -13.47127 -13.10905
-12.94659 -12.85959 -12.78403 -12.47811 -12.39063 -12.09314 -12.05501 -11.80833
-11.62223 -11.49693 -11.41088 -10.88972 -10.83226 -10.45959 -10.04828 -9.81327
-9.54916 -8.10374 -6.23998 1.43628 1.45162 1.51619 1.77669 2.39806
2.45675 3.17906 3.35787 3.48407 3.70010 3.77415 3.94965 4.13282
4.22910 4.26475 4.37539 4.46569 4.54444 4.58226 4.63791 4.70226
4.71474 4.75171 4.82294 4.98220 4.99452 5.02680 5.05347 5.13591
5.19764 5.25816 5.29853 5.41321 5.57892 5.60008 5.69575 5.77663
5.84814 6.35903 6.42511 6.79641 6.85130 7.43048 7.46138 8.97046
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.022619 B = 0.003969 C = 0.003585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1237.620983 B = 7053.437165 C = 7807.520402
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.024 3.976
3 Si 0.950 3.050
4 H -0.270 1.270
5 H -0.293 1.293
6 H -0.269 1.269
7 C -0.506 4.506
8 H 0.066 0.934
9 C 0.007 3.993
10 C 0.179 3.821
11 N -0.701 5.701
12 C 0.496 3.504
13 O -0.604 6.604
14 C -0.129 4.129
15 C -0.085 4.085
16 C -0.111 4.111
17 H 0.092 0.908
18 C -0.152 4.152
19 C 0.043 3.957
20 N -0.688 5.688
21 C 0.040 3.960
22 C -0.175 4.175
23 C -0.162 4.162
24 H 0.259 0.741
25 H 0.026 0.974
26 H 0.032 0.968
27 H 0.411 0.589
28 H 0.120 0.880
29 H 0.109 0.891
30 H 0.047 0.953
31 H 0.057 0.943
32 H 0.083 0.917
33 H 0.060 0.940
34 H 0.083 0.917
35 H 0.082 0.918
36 H 0.338 0.662
37 H 0.064 0.936
38 H 0.081 0.919
39 H 0.089 0.911
40 H 0.087 0.913
41 H 0.063 0.937
42 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.604 -10.878 -11.816 18.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.176 4.176
3 Si 0.776 3.224
4 H -0.195 1.195
5 H -0.219 1.219
6 H -0.194 1.194
7 C -0.544 4.544
8 H 0.084 0.916
9 C 0.006 3.994
10 C 0.054 3.946
11 N -0.350 5.350
12 C 0.284 3.716
13 O -0.487 6.487
14 C -0.169 4.169
15 C -0.124 4.124
16 C -0.131 4.131
17 H 0.111 0.889
18 C -0.191 4.191
19 C -0.087 4.087
20 N -0.315 5.315
21 C -0.089 4.089
22 C -0.212 4.212
23 C -0.200 4.200
24 H 0.068 0.932
25 H 0.044 0.956
26 H 0.050 0.950
27 H 0.247 0.753
28 H 0.138 0.862
29 H 0.127 0.873
30 H 0.066 0.934
31 H 0.075 0.925
32 H 0.102 0.898
33 H 0.079 0.921
34 H 0.102 0.898
35 H 0.101 0.899
36 H 0.154 0.846
37 H 0.082 0.918
38 H 0.100 0.900
39 H 0.107 0.893
40 H 0.106 0.894
41 H 0.082 0.918
42 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 9.377 -10.814 -12.147 18.773
hybrid contribution -0.924 1.137 0.756 1.649
sum 8.453 -9.678 -11.391 17.172
Atomic orbital electron populations
1.70104 1.07370 1.27408 1.49781 1.25724 0.95431 1.02158 0.94329
0.85736 0.78367 0.79304 0.78956 1.19466 1.21864 1.19448 1.20654
0.93209 0.89545 1.50996 0.91615 1.19050 0.99583 0.94511 0.86262
1.20517 0.88035 0.95244 0.90813 1.45932 1.10961 1.60109 1.18025
1.21574 0.91308 0.76620 0.82053 1.90631 1.25412 1.57365 1.75257
1.21742 0.95788 1.04038 0.95329 1.21282 0.97070 1.00087 0.93933
1.22418 0.96706 0.97828 0.96107 0.88943 1.23161 0.99640 1.01459
0.94883 1.23202 0.99230 0.88367 0.97861 1.62890 1.46891 1.10331
1.11365 1.22907 1.00957 0.97251 0.87825 1.23012 0.97301 0.96249
1.04660 1.22434 0.93783 1.01464 1.02366 0.93247 0.95606 0.94974
0.75313 0.86210 0.87292 0.93438 0.92451 0.89805 0.92115 0.89817
0.89904 0.84629 0.91780 0.90045 0.89302 0.89438 0.91841 0.91306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.54 12.91 21.45 0.28 -51.26 16
2 C 0.02 1.28 5.39 84.66 0.46 1.74 16
3 Si 0.95 41.84 29.55 68.60 2.03 43.87 16
4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16
5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16
6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
7 C -0.51 -25.57 8.63 25.60 0.22 -25.34 16
8 H 0.07 3.17 7.82 -2.91 -0.02 3.14 16
9 C 0.01 0.31 1.38 -52.93 -0.07 0.24 16
10 C 0.18 8.21 5.50 86.38 0.48 8.68 16
11 N -0.70 -26.25 5.47 -463.08 -2.54 -28.79 16
12 C 0.50 17.67 7.83 87.66 0.69 18.35 16
13 O -0.60 -26.98 15.98 -3.03 -0.05 -27.03 16
14 C -0.13 -3.00 5.52 29.85 0.16 -2.84 16
15 C -0.09 -1.94 3.70 30.59 0.11 -1.83 16
16 C -0.11 -1.85 3.02 -9.91 -0.03 -1.88 16
17 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
18 C -0.15 -2.34 6.61 31.80 0.21 -2.13 16
19 C 0.04 0.61 7.55 86.60 0.65 1.27 16
20 N -0.69 -12.14 7.54 -501.52 -3.78 -15.92 16
21 C 0.04 0.70 6.70 86.45 0.58 1.28 16
22 C -0.18 -6.86 9.96 30.62 0.30 -6.56 16
23 C -0.16 -7.40 9.42 30.62 0.29 -7.11 16
24 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16
25 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16
26 H 0.03 1.47 8.09 -2.39 -0.02 1.45 16
27 H 0.41 13.45 8.37 -92.70 -0.78 12.67 16
28 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16
29 H 0.11 2.21 6.88 -2.39 -0.02 2.19 16
30 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16
31 H 0.06 1.44 8.10 -2.39 -0.02 1.43 16
32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
33 H 0.06 1.05 7.87 -2.39 -0.02 1.03 16
34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
35 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16
36 H 0.34 5.71 8.92 -89.69 -0.80 4.91 16
37 H 0.06 1.20 6.73 -2.39 -0.02 1.19 16
38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
39 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16
40 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16
41 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16
42 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16
Total: -1.00 -64.11 342.74 -0.58 -64.69
By element:
Atomic # 1 Polarization: 31.14 SS G_CDS: -0.57 Total: 30.57 kcal
Atomic # 6 Polarization: -20.18 SS G_CDS: 4.05 Total: -16.13 kcal
Atomic # 7 Polarization: -89.92 SS G_CDS: -6.04 Total: -95.96 kcal
Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.03 kcal
Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal
Total: -64.11 -0.58 -64.69 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000404100145.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.600 kcal
(2) G-P(sol) polarization free energy of solvation -64.107 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.507 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.088 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds