Wall clock time and date at job start Mon Mar 30 2020 04:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99744 * 2 1 4 4 H 1.48494 * 109.47076 * 269.99493 * 3 2 1 5 5 H 1.48499 * 109.47411 * 29.99717 * 3 2 1 6 6 H 1.48501 * 109.46863 * 149.99663 * 3 2 1 7 7 C 1.37878 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00090 * 187.92369 * 7 2 1 9 9 C 1.50704 * 120.00003 * 7.92308 * 7 2 1 10 10 C 1.53005 * 115.54924 * 274.27872 * 9 7 2 11 11 N 1.46491 * 109.46971 * 275.88460 * 10 9 7 12 12 C 1.34782 * 119.99932 * 185.15011 * 11 10 9 13 13 O 1.21284 * 119.99801 * 4.80362 * 12 11 10 14 14 C 1.50700 * 120.00093 * 184.80182 * 12 11 10 15 15 H 1.09006 * 109.47132 * 25.54472 * 14 12 11 16 16 C 1.52997 * 109.47276 * 265.54055 * 14 12 11 17 17 C 1.53000 * 109.47190 * 180.02562 * 16 14 12 18 18 C 1.52994 * 109.47377 * 59.99862 * 17 16 14 19 19 C 1.53002 * 109.47388 * 300.00286 * 18 17 16 20 20 C 1.53000 * 109.47095 * 59.99542 * 19 18 17 21 21 H 1.08997 * 109.47233 * 60.00219 * 20 19 18 22 22 N 1.46896 * 109.47408 * 180.02562 * 20 19 18 23 23 C 1.52998 * 117.51760 * 59.97654 * 9 7 2 24 24 C 1.52997 * 117.49986 * 128.60755 * 9 7 2 25 25 H 0.96999 * 120.00049 * 5.03068 * 1 2 3 26 26 H 1.08996 * 109.46900 * 155.88360 * 10 9 7 27 27 H 1.09001 * 109.47092 * 35.88861 * 10 9 7 28 28 H 0.96997 * 120.00454 * 5.15418 * 11 10 9 29 29 H 1.08997 * 109.47120 * 300.00266 * 16 14 12 30 30 H 1.09004 * 109.47163 * 60.00220 * 16 14 12 31 31 H 1.09010 * 109.46994 * 299.99843 * 17 16 14 32 32 H 1.09003 * 109.46940 * 180.02562 * 17 16 14 33 33 H 1.08997 * 109.47525 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47203 * 59.99792 * 18 17 16 35 35 H 1.08994 * 109.47371 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.46833 * 300.00342 * 19 18 17 37 37 H 1.00898 * 111.00136 * 300.00192 * 22 20 19 38 38 H 1.00904 * 110.99947 * 63.95162 * 22 20 19 39 39 H 1.09004 * 117.50027 * 214.97037 * 23 9 7 40 40 H 1.09000 * 117.49690 * 359.97438 * 23 9 7 41 41 H 1.09007 * 117.49619 * 359.97438 * 24 9 7 42 42 H 1.08993 * 117.49629 * 144.97296 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0768 -1.1985 0.1295 9 6 1.2618 -2.4930 -0.1788 10 6 0.6835 -3.1044 1.0991 11 7 1.7194 -3.8865 1.7783 12 6 1.4102 -4.6046 2.8762 13 8 0.2589 -4.6737 3.2513 14 6 2.4951 -5.3217 3.6377 15 1 3.4483 -4.8195 3.4718 16 6 2.5894 -6.7688 3.1500 17 6 3.6904 -7.4970 3.9235 18 6 3.3592 -7.4827 5.4171 19 6 3.2649 -6.0356 5.9049 20 6 2.1639 -5.3074 5.1314 21 1 1.2107 -5.8094 5.2969 22 7 2.0737 -3.9179 5.5992 23 6 0.4686 -2.6808 -1.4735 24 6 1.7701 -3.4547 -1.2547 25 1 -0.4850 0.8368 -0.0737 26 1 -0.1538 -3.7540 0.8443 27 1 0.3381 -2.3083 1.7586 28 1 2.6277 -3.8875 1.4381 29 1 1.6363 -7.2709 3.3159 30 1 2.8250 -6.7789 2.0858 31 1 4.6437 -6.9949 3.7579 32 1 3.7578 -8.5278 3.5757 33 1 4.1434 -8.0019 5.9682 34 1 2.4060 -7.9847 5.5827 35 1 3.0285 -6.0255 6.9689 36 1 4.2181 -5.5336 5.7392 37 1 1.8558 -3.8812 6.5837 38 1 2.9237 -3.4127 5.3979 39 1 -0.4653 -3.2400 -1.4150 40 1 0.4834 -1.8645 -2.1957 41 1 2.6415 -3.1477 -1.8332 42 1 1.6929 -4.5229 -1.0520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404142403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:30 Heat of formation + Delta-G solvation = -61.973637 kcal Electronic energy + Delta-G solvation = -20925.178914 eV Core-core repulsion = 17903.506518 eV Total energy + Delta-G solvation = -3021.672396 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16418 -39.12947 -38.15309 -34.89557 -34.44864 -33.93492 -32.07543 -29.13451 -28.10129 -27.02528 -24.14535 -23.05008 -22.81901 -21.22274 -21.16388 -20.61529 -18.50310 -17.69122 -16.96137 -16.67761 -16.58099 -16.06050 -15.85336 -15.36763 -15.10015 -14.90883 -14.56168 -14.40182 -13.89165 -13.72528 -13.49928 -13.41683 -13.01318 -12.97873 -12.74718 -12.37980 -12.27539 -12.11324 -12.04429 -11.88797 -11.49727 -11.46395 -11.15177 -10.80914 -10.66239 -10.44820 -9.98656 -9.78749 -9.46554 -8.10471 -6.22754 1.43341 1.44955 1.53655 1.88582 2.43102 2.45946 3.19344 3.47795 3.50903 3.72418 3.77609 4.13393 4.20053 4.22069 4.28045 4.36181 4.40389 4.48336 4.56771 4.58542 4.63015 4.78528 4.86266 4.90709 4.97575 5.06116 5.14835 5.18573 5.20307 5.25692 5.30048 5.32631 5.51992 5.60157 5.63611 5.72617 5.80897 6.31316 6.37386 6.63144 6.83182 6.89696 7.46934 7.53272 8.98522 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.004896 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.074121 B = 5718.014837 C = 6198.202874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.005 3.995 10 C 0.185 3.815 11 N -0.707 5.707 12 C 0.517 3.483 13 O -0.592 6.592 14 C -0.090 4.090 15 H 0.103 0.897 16 C -0.106 4.106 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.142 4.142 20 C 0.112 3.888 21 H 0.062 0.938 22 N -0.860 5.860 23 C -0.162 4.162 24 C -0.171 4.171 25 H 0.259 0.741 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.407 0.593 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.349 0.651 38 H 0.343 0.657 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.161 -13.980 8.758 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.189 1.189 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.004 3.996 10 C 0.061 3.939 11 N -0.357 5.357 12 C 0.305 3.695 13 O -0.473 6.473 14 C -0.112 4.112 15 H 0.121 0.879 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.181 4.181 20 C 0.000 4.000 21 H 0.081 0.919 22 N -0.390 5.390 23 C -0.200 4.200 24 C -0.208 4.208 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.242 0.758 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.567 -13.787 8.578 18.847 hybrid contribution 0.735 1.189 0.252 1.420 sum 10.303 -12.599 8.830 18.516 Atomic orbital electron populations 1.70162 1.07339 1.27455 1.49660 1.25718 0.95428 1.02186 0.94436 0.85677 0.78857 0.79701 0.78155 1.20056 1.21849 1.18870 1.20710 0.93215 0.89939 1.50322 0.91959 1.19082 0.99645 0.94664 0.86232 1.20502 0.88715 0.91177 0.93539 1.45991 1.13544 1.47541 1.28581 1.21125 0.90192 0.78317 0.79833 1.90605 1.23647 1.64363 1.68677 1.21375 0.97054 0.97638 0.95087 0.87931 1.21482 1.00377 0.91827 1.00732 1.21524 0.97744 1.00966 0.94608 1.21515 1.02187 0.95743 0.96096 1.22338 0.98909 0.97039 0.99841 1.21212 0.98316 0.88714 0.91727 0.91938 1.58727 1.42646 1.13812 1.23838 1.22452 0.93947 1.01346 1.02259 1.22957 0.97158 0.96279 1.04416 0.93246 0.95708 0.95841 0.75806 0.92665 0.90704 0.90543 0.90127 0.90057 0.92399 0.91006 0.90811 0.83676 0.84331 0.91467 0.91764 0.89231 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.80 12.95 21.45 0.28 -52.52 16 2 C 0.02 1.24 5.38 84.65 0.46 1.69 16 3 Si 0.95 42.93 29.55 68.60 2.03 44.95 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.50 -26.46 8.81 25.60 0.23 -26.23 16 8 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 9 C 0.00 0.22 1.37 -52.93 -0.07 0.15 16 10 C 0.19 8.95 5.63 86.38 0.49 9.44 16 11 N -0.71 -27.46 5.46 -463.06 -2.53 -29.99 16 12 C 0.52 19.50 6.43 87.66 0.56 20.06 16 13 O -0.59 -27.98 16.24 -3.04 -0.05 -28.03 16 14 C -0.09 -2.31 2.16 -11.54 -0.02 -2.34 16 15 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 16 C -0.11 -2.22 5.19 30.59 0.16 -2.06 16 17 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 18 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 19 C -0.14 -2.27 5.49 30.59 0.17 -2.10 16 20 C 0.11 2.73 2.35 44.92 0.11 2.84 16 21 H 0.06 1.86 7.85 -2.39 -0.02 1.85 16 22 N -0.86 -22.45 8.83 -168.68 -1.49 -23.94 16 23 C -0.16 -7.53 9.40 30.59 0.29 -7.24 16 24 C -0.17 -6.79 9.80 30.59 0.30 -6.49 16 25 H 0.26 14.45 8.32 -92.71 -0.77 13.68 16 26 H 0.02 1.24 7.87 -2.39 -0.02 1.22 16 27 H 0.02 1.34 8.09 -2.39 -0.02 1.32 16 28 H 0.41 13.65 8.42 -92.71 -0.78 12.87 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.35 7.62 9.04 -89.70 -0.81 6.81 16 38 H 0.34 7.96 8.98 -89.69 -0.81 7.15 16 39 H 0.07 3.04 8.06 -2.38 -0.02 3.02 16 40 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 42 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -67.92 340.34 -0.13 -68.05 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -1.38 Total: 36.63 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 3.01 Total: -15.16 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -3.74 Total: -106.45 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -67.92 -0.13 -68.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404142403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.077 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds