Wall clock time and date at job start Mon Mar 30 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46231 * 2 1 4 4 O 1.21273 * 119.99990 * 94.46597 * 3 2 1 5 5 N 1.34783 * 119.99742 * 274.46333 * 3 2 1 6 6 C 1.46498 * 119.99903 * 184.99336 * 5 3 2 7 7 C 1.52995 * 109.47012 * 185.01182 * 6 5 3 8 8 C 1.50703 * 115.54753 * 269.63126 * 7 6 5 9 9 H 1.08006 * 119.99784 * 95.17461 * 8 7 6 10 10 C 1.37876 * 120.00501 * 275.17487 * 8 7 6 11 11 N 1.31510 * 119.99620 * 5.15941 * 10 8 7 12 12 Si 1.86793 * 120.00137 * 185.16400 * 10 8 7 13 13 H 1.48508 * 109.47226 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47337 * 119.99791 * 12 10 8 15 15 H 1.48504 * 109.47372 * 239.99906 * 12 10 8 16 16 C 1.52992 * 117.50097 * 123.93048 * 7 6 5 17 17 C 1.52994 * 117.50214 * 55.30618 * 7 6 5 18 18 C 1.53034 * 109.45266 * 119.97304 * 2 1 3 19 19 C 1.53120 * 109.27646 * 179.18920 * 18 2 1 20 20 C 1.53121 * 109.15864 * 302.34384 * 19 18 2 21 21 C 1.53034 * 109.27582 * 57.65763 * 20 19 18 22 22 N 1.46840 * 109.46031 * 240.01879 * 2 1 3 23 23 H 1.09000 * 109.47437 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46740 * 299.98187 * 1 2 3 25 25 H 1.08994 * 109.47108 * 59.97590 * 1 2 3 26 26 H 0.97001 * 119.99842 * 4.99506 * 5 3 2 27 27 H 1.08999 * 109.47241 * 305.01230 * 6 5 3 28 28 H 1.09003 * 109.46805 * 65.00726 * 6 5 3 29 29 H 0.97000 * 119.99784 * 185.00331 * 11 10 8 30 30 H 1.09010 * 117.49803 * 359.97438 * 16 7 6 31 31 H 1.09003 * 117.50504 * 145.01718 * 16 7 6 32 32 H 1.09002 * 117.49668 * 214.97857 * 17 7 6 33 33 H 1.09004 * 117.49836 * 359.97438 * 17 7 6 34 34 H 1.08999 * 109.50504 * 299.13071 * 18 2 1 35 35 H 1.09003 * 109.50862 * 59.24598 * 18 2 1 36 36 H 1.08994 * 109.52445 * 62.25388 * 19 18 2 37 37 H 1.09003 * 109.52109 * 182.43764 * 19 18 2 38 38 H 1.09000 * 109.49632 * 177.59672 * 20 19 18 39 39 H 1.08994 * 109.50215 * 297.67339 * 20 19 18 40 40 H 1.09004 * 109.45863 * 180.80002 * 21 20 19 41 41 H 1.09001 * 109.46125 * 60.83590 * 21 20 19 42 42 H 1.00896 * 111.00141 * 302.35346 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.3113 1.9654 1.0471 5 7 2.1710 2.0865 -1.1637 6 6 2.7614 3.4273 -1.1748 7 6 2.6891 4.0047 -2.5897 8 6 3.8788 3.7193 -3.4697 9 1 3.8605 2.8776 -4.1463 10 6 4.9906 4.5325 -3.4111 11 7 5.0547 5.4951 -2.5173 12 14 6.4057 4.2672 -4.6012 13 1 6.0896 3.1280 -5.5000 14 1 6.6086 5.4955 -5.4107 15 1 7.6441 3.9667 -3.8388 16 6 1.9847 5.3510 -2.7682 17 6 1.3144 4.0660 -3.2584 18 6 2.0397 -0.7209 1.2500 19 6 3.5707 -0.7363 1.2357 20 6 4.0545 -1.4192 -0.0465 21 6 3.4864 -0.6780 -1.2589 22 7 2.0192 -0.6919 -1.1993 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5136 0.8902 25 1 -0.3633 0.5142 -0.8897 26 1 1.8801 1.6778 -1.9939 27 1 2.2105 4.0725 -0.4905 28 1 3.8030 3.3681 -0.8591 29 1 5.8028 6.1126 -2.5225 30 1 1.5723 5.8253 -1.8776 31 1 2.3817 6.0308 -3.5222 32 1 1.2705 3.9004 -4.3348 33 1 0.4614 3.6946 -2.6903 34 1 1.6893 -0.1981 2.1399 35 1 1.6655 -1.7447 1.2578 36 1 3.9456 0.2867 1.2674 37 1 3.9375 -1.2865 2.1022 38 1 5.1436 -1.3953 -0.0828 39 1 3.7126 -2.4541 -0.0588 40 1 3.8175 -1.1703 -2.1733 41 1 3.8405 0.3529 -1.2530 42 1 1.6644 -1.6354 -1.2424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404145466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:09 Heat of formation + Delta-G solvation = -26.482642 kcal Electronic energy + Delta-G solvation = -21652.212920 eV Core-core repulsion = 18632.079529 eV Total energy + Delta-G solvation = -3020.133391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38428 -37.53243 -36.48426 -33.39546 -32.68217 -31.92641 -31.37281 -27.09147 -26.56904 -25.24264 -23.41535 -22.45613 -21.20117 -20.80766 -19.33055 -18.76665 -16.78377 -16.05863 -15.51183 -15.35695 -14.69141 -14.48441 -14.26148 -14.11316 -13.85710 -13.58811 -13.38470 -12.66505 -12.61523 -12.03505 -11.98390 -11.91072 -11.64631 -11.58686 -11.40016 -11.04384 -11.03230 -10.87277 -10.59092 -10.50559 -10.37830 -10.25422 -9.62990 -9.24093 -8.90269 -8.47347 -8.36160 -8.17117 -8.05323 -6.06218 -4.13772 3.19331 3.26506 3.35680 3.38491 3.86778 4.17765 4.38277 4.72736 4.94059 4.99636 5.10440 5.23416 5.24120 5.34004 5.44136 5.49599 5.65527 5.73418 5.78431 5.89846 5.97576 6.02579 6.07005 6.12919 6.17813 6.27724 6.38304 6.45436 6.46766 6.67285 6.71083 6.89290 6.95584 7.10595 7.33099 7.37947 7.48011 7.54806 7.84523 8.37257 8.38836 8.86790 8.95847 9.53050 11.02488 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.006387 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.811457 B = 4382.860897 C = 5007.847035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.093 3.907 3 C 0.520 3.480 4 O -0.558 6.558 5 N -0.698 5.698 6 C 0.161 3.839 7 C 0.031 3.969 8 C -0.495 4.495 9 H 0.061 0.939 10 C 0.071 3.929 11 N -0.876 5.876 12 Si 0.888 3.112 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.150 4.150 17 C -0.208 4.208 18 C -0.128 4.128 19 C -0.126 4.126 20 C -0.155 4.155 21 C 0.045 3.955 22 N -0.670 5.670 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.406 0.594 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.260 0.740 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.401 -12.865 3.445 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 C 0.304 3.696 4 O -0.437 6.437 5 N -0.347 5.347 6 C 0.038 3.962 7 C 0.030 3.970 8 C -0.533 4.533 9 H 0.079 0.921 10 C -0.132 4.132 11 N -0.512 5.512 12 Si 0.715 3.285 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.188 4.188 17 C -0.246 4.246 18 C -0.168 4.168 19 C -0.163 4.163 20 C -0.195 4.195 21 C -0.084 4.084 22 N -0.301 5.301 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.242 0.758 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.094 -11.766 3.861 13.801 hybrid contribution 0.983 -0.827 -0.302 1.319 sum -5.111 -12.593 3.559 14.049 Atomic orbital electron populations 1.21759 0.92046 1.02465 1.03055 1.21173 0.96323 0.92514 0.90123 1.20104 0.78055 0.87174 0.84248 1.90650 1.51746 1.69445 1.31826 1.46192 1.60973 1.18409 1.09131 1.21147 0.97408 0.80430 0.97178 1.19054 0.90178 0.96262 0.91532 1.20460 0.97770 1.13479 1.21568 0.92059 1.24979 0.97809 0.95529 0.94914 1.70027 1.31425 1.16972 1.32764 0.86609 0.82484 0.78177 0.81181 1.19675 1.20981 1.21075 1.22535 1.03790 0.91269 1.01194 1.22951 0.97148 1.04862 0.99604 1.22001 0.96466 0.99643 0.98657 1.21621 0.95363 1.02172 0.97158 1.22240 1.01407 0.99236 0.96585 1.22207 0.86691 1.02531 0.96978 1.60631 1.09428 1.22115 1.37876 0.91865 0.91598 0.91210 0.75828 0.94063 0.91333 0.92994 0.91785 0.89899 0.90302 0.91620 0.90502 0.91871 0.90588 0.92219 0.91482 0.92406 0.90263 0.89367 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.73 37.16 0.32 -1.24 16 2 C 0.09 1.27 0.87 -132.77 -0.12 1.16 16 3 C 0.52 9.54 4.72 -10.98 -0.05 9.49 16 4 O -0.56 -12.17 15.06 5.56 0.08 -12.09 16 5 N -0.70 -13.42 4.36 -60.30 -0.26 -13.69 16 6 C 0.16 3.71 5.71 -4.05 -0.02 3.69 16 7 C 0.03 0.72 1.46 -155.67 -0.23 0.50 16 8 C -0.50 -12.94 8.77 -34.44 -0.30 -13.24 16 9 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 10 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 11 N -0.88 -24.50 12.90 55.43 0.72 -23.78 16 12 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C -0.15 -3.46 9.37 -26.74 -0.25 -3.71 16 17 C -0.21 -4.33 9.50 -26.74 -0.25 -4.59 16 18 C -0.13 -1.64 4.52 -26.65 -0.12 -1.76 16 19 C -0.13 -1.71 5.72 -26.61 -0.15 -1.86 16 20 C -0.16 -1.88 6.08 -26.65 -0.16 -2.04 16 21 C 0.05 0.61 6.22 -3.84 -0.02 0.58 16 22 N -0.67 -8.23 5.61 -101.18 -0.57 -8.80 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.41 7.40 7.65 -40.82 -0.31 7.09 16 27 H 0.04 0.98 7.83 -51.93 -0.41 0.58 16 28 H 0.07 1.80 8.04 -51.93 -0.42 1.38 16 29 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 30 H 0.06 1.42 8.03 -51.92 -0.42 1.00 16 31 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.07 7.84 -51.93 -0.41 0.67 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.30 6.60 -51.93 -0.34 0.95 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.50 6.38 -51.93 -0.33 1.17 16 42 H 0.34 3.39 8.79 -39.29 -0.35 3.04 16 LS Contribution 332.72 15.07 5.01 5.01 Total: -1.00 -28.65 332.72 -8.67 -37.32 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.18 Total: 11.55 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.45 Total: -11.20 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.12 Total: -46.27 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.65 -8.67 -37.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404145466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.838 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds