Wall clock time and date at job start Mon Mar 30 2020 05:47:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50701 * 109.46231 * 2 1
4 4 O 1.21273 * 119.99990 * 94.46597 * 3 2 1
5 5 N 1.34783 * 119.99742 * 274.46333 * 3 2 1
6 6 C 1.46498 * 119.99903 * 184.99336 * 5 3 2
7 7 C 1.52995 * 109.47012 * 185.01182 * 6 5 3
8 8 C 1.50703 * 115.54753 * 269.63126 * 7 6 5
9 9 H 1.08006 * 119.99784 * 95.17461 * 8 7 6
10 10 C 1.37876 * 120.00501 * 275.17487 * 8 7 6
11 11 N 1.31510 * 119.99620 * 5.15941 * 10 8 7
12 12 Si 1.86793 * 120.00137 * 185.16400 * 10 8 7
13 13 H 1.48508 * 109.47226 * 359.97438 * 12 10 8
14 14 H 1.48499 * 109.47337 * 119.99791 * 12 10 8
15 15 H 1.48504 * 109.47372 * 239.99906 * 12 10 8
16 16 C 1.52992 * 117.50097 * 123.93048 * 7 6 5
17 17 C 1.52994 * 117.50214 * 55.30618 * 7 6 5
18 18 C 1.53034 * 109.45266 * 119.97304 * 2 1 3
19 19 C 1.53120 * 109.27646 * 179.18920 * 18 2 1
20 20 C 1.53121 * 109.15864 * 302.34384 * 19 18 2
21 21 C 1.53034 * 109.27582 * 57.65763 * 20 19 18
22 22 N 1.46840 * 109.46031 * 240.01879 * 2 1 3
23 23 H 1.09000 * 109.47437 * 179.97438 * 1 2 3
24 24 H 1.09002 * 109.46740 * 299.98187 * 1 2 3
25 25 H 1.08994 * 109.47108 * 59.97590 * 1 2 3
26 26 H 0.97001 * 119.99842 * 4.99506 * 5 3 2
27 27 H 1.08999 * 109.47241 * 305.01230 * 6 5 3
28 28 H 1.09003 * 109.46805 * 65.00726 * 6 5 3
29 29 H 0.97000 * 119.99784 * 185.00331 * 11 10 8
30 30 H 1.09010 * 117.49803 * 359.97438 * 16 7 6
31 31 H 1.09003 * 117.50504 * 145.01718 * 16 7 6
32 32 H 1.09002 * 117.49668 * 214.97857 * 17 7 6
33 33 H 1.09004 * 117.49836 * 359.97438 * 17 7 6
34 34 H 1.08999 * 109.50504 * 299.13071 * 18 2 1
35 35 H 1.09003 * 109.50862 * 59.24598 * 18 2 1
36 36 H 1.08994 * 109.52445 * 62.25388 * 19 18 2
37 37 H 1.09003 * 109.52109 * 182.43764 * 19 18 2
38 38 H 1.09000 * 109.49632 * 177.59672 * 20 19 18
39 39 H 1.08994 * 109.50215 * 297.67339 * 20 19 18
40 40 H 1.09004 * 109.45863 * 180.80002 * 21 20 19
41 41 H 1.09001 * 109.46125 * 60.83590 * 21 20 19
42 42 H 1.00896 * 111.00141 * 302.35346 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 8 2.3113 1.9654 1.0471
5 7 2.1710 2.0865 -1.1637
6 6 2.7614 3.4273 -1.1748
7 6 2.6891 4.0047 -2.5897
8 6 3.8788 3.7193 -3.4697
9 1 3.8605 2.8776 -4.1463
10 6 4.9906 4.5325 -3.4111
11 7 5.0547 5.4951 -2.5173
12 14 6.4057 4.2672 -4.6012
13 1 6.0896 3.1280 -5.5000
14 1 6.6086 5.4955 -5.4107
15 1 7.6441 3.9667 -3.8388
16 6 1.9847 5.3510 -2.7682
17 6 1.3144 4.0660 -3.2584
18 6 2.0397 -0.7209 1.2500
19 6 3.5707 -0.7363 1.2357
20 6 4.0545 -1.4192 -0.0465
21 6 3.4864 -0.6780 -1.2589
22 7 2.0192 -0.6919 -1.1993
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3633 0.5136 0.8902
25 1 -0.3633 0.5142 -0.8897
26 1 1.8801 1.6778 -1.9939
27 1 2.2105 4.0725 -0.4905
28 1 3.8030 3.3681 -0.8591
29 1 5.8028 6.1126 -2.5225
30 1 1.5723 5.8253 -1.8776
31 1 2.3817 6.0308 -3.5222
32 1 1.2705 3.9004 -4.3348
33 1 0.4614 3.6946 -2.6903
34 1 1.6893 -0.1981 2.1399
35 1 1.6655 -1.7447 1.2578
36 1 3.9456 0.2867 1.2674
37 1 3.9375 -1.2865 2.1022
38 1 5.1436 -1.3953 -0.0828
39 1 3.7126 -2.4541 -0.0588
40 1 3.8175 -1.1703 -2.1733
41 1 3.8405 0.3529 -1.2530
42 1 1.6644 -1.6354 -1.2424
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000404145466.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:47:09
Heat of formation + Delta-G solvation = -26.482642 kcal
Electronic energy + Delta-G solvation = -21652.212920 eV
Core-core repulsion = 18632.079529 eV
Total energy + Delta-G solvation = -3020.133391 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.38428 -37.53243 -36.48426 -33.39546 -32.68217 -31.92641 -31.37281 -27.09147
-26.56904 -25.24264 -23.41535 -22.45613 -21.20117 -20.80766 -19.33055 -18.76665
-16.78377 -16.05863 -15.51183 -15.35695 -14.69141 -14.48441 -14.26148 -14.11316
-13.85710 -13.58811 -13.38470 -12.66505 -12.61523 -12.03505 -11.98390 -11.91072
-11.64631 -11.58686 -11.40016 -11.04384 -11.03230 -10.87277 -10.59092 -10.50559
-10.37830 -10.25422 -9.62990 -9.24093 -8.90269 -8.47347 -8.36160 -8.17117
-8.05323 -6.06218 -4.13772 3.19331 3.26506 3.35680 3.38491 3.86778
4.17765 4.38277 4.72736 4.94059 4.99636 5.10440 5.23416 5.24120
5.34004 5.44136 5.49599 5.65527 5.73418 5.78431 5.89846 5.97576
6.02579 6.07005 6.12919 6.17813 6.27724 6.38304 6.45436 6.46766
6.67285 6.71083 6.89290 6.95584 7.10595 7.33099 7.37947 7.48011
7.54806 7.84523 8.37257 8.38836 8.86790 8.95847 9.53050 11.02488
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.020662 B = 0.006387 C = 0.005590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1354.811457 B = 4382.860897 C = 5007.847035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.093 3.907
3 C 0.520 3.480
4 O -0.558 6.558
5 N -0.698 5.698
6 C 0.161 3.839
7 C 0.031 3.969
8 C -0.495 4.495
9 H 0.061 0.939
10 C 0.071 3.929
11 N -0.876 5.876
12 Si 0.888 3.112
13 H -0.272 1.272
14 H -0.284 1.284
15 H -0.285 1.285
16 C -0.150 4.150
17 C -0.208 4.208
18 C -0.128 4.128
19 C -0.126 4.126
20 C -0.155 4.155
21 C 0.045 3.955
22 N -0.670 5.670
23 H 0.062 0.938
24 H 0.065 0.935
25 H 0.069 0.931
26 H 0.406 0.594
27 H 0.041 0.959
28 H 0.068 0.932
29 H 0.260 0.740
30 H 0.064 0.936
31 H 0.082 0.918
32 H 0.078 0.922
33 H 0.065 0.935
34 H 0.076 0.924
35 H 0.063 0.937
36 H 0.075 0.925
37 H 0.059 0.941
38 H 0.066 0.934
39 H 0.057 0.943
40 H 0.079 0.921
41 H 0.088 0.912
42 H 0.343 0.657
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.401 -12.865 3.445 14.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.001 4.001
3 C 0.304 3.696
4 O -0.437 6.437
5 N -0.347 5.347
6 C 0.038 3.962
7 C 0.030 3.970
8 C -0.533 4.533
9 H 0.079 0.921
10 C -0.132 4.132
11 N -0.512 5.512
12 Si 0.715 3.285
13 H -0.197 1.197
14 H -0.210 1.210
15 H -0.211 1.211
16 C -0.188 4.188
17 C -0.246 4.246
18 C -0.168 4.168
19 C -0.163 4.163
20 C -0.195 4.195
21 C -0.084 4.084
22 N -0.301 5.301
23 H 0.081 0.919
24 H 0.084 0.916
25 H 0.088 0.912
26 H 0.242 0.758
27 H 0.059 0.941
28 H 0.087 0.913
29 H 0.070 0.930
30 H 0.082 0.918
31 H 0.101 0.899
32 H 0.097 0.903
33 H 0.084 0.916
34 H 0.095 0.905
35 H 0.081 0.919
36 H 0.094 0.906
37 H 0.078 0.922
38 H 0.085 0.915
39 H 0.076 0.924
40 H 0.097 0.903
41 H 0.106 0.894
42 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -6.094 -11.766 3.861 13.801
hybrid contribution 0.983 -0.827 -0.302 1.319
sum -5.111 -12.593 3.559 14.049
Atomic orbital electron populations
1.21759 0.92046 1.02465 1.03055 1.21173 0.96323 0.92514 0.90123
1.20104 0.78055 0.87174 0.84248 1.90650 1.51746 1.69445 1.31826
1.46192 1.60973 1.18409 1.09131 1.21147 0.97408 0.80430 0.97178
1.19054 0.90178 0.96262 0.91532 1.20460 0.97770 1.13479 1.21568
0.92059 1.24979 0.97809 0.95529 0.94914 1.70027 1.31425 1.16972
1.32764 0.86609 0.82484 0.78177 0.81181 1.19675 1.20981 1.21075
1.22535 1.03790 0.91269 1.01194 1.22951 0.97148 1.04862 0.99604
1.22001 0.96466 0.99643 0.98657 1.21621 0.95363 1.02172 0.97158
1.22240 1.01407 0.99236 0.96585 1.22207 0.86691 1.02531 0.96978
1.60631 1.09428 1.22115 1.37876 0.91865 0.91598 0.91210 0.75828
0.94063 0.91333 0.92994 0.91785 0.89899 0.90302 0.91620 0.90502
0.91871 0.90588 0.92219 0.91482 0.92406 0.90263 0.89367 0.83905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.56 8.73 37.16 0.32 -1.24 16
2 C 0.09 1.27 0.87 -132.77 -0.12 1.16 16
3 C 0.52 9.54 4.72 -10.98 -0.05 9.49 16
4 O -0.56 -12.17 15.06 5.56 0.08 -12.09 16
5 N -0.70 -13.42 4.36 -60.30 -0.26 -13.69 16
6 C 0.16 3.71 5.71 -4.05 -0.02 3.69 16
7 C 0.03 0.72 1.46 -155.67 -0.23 0.50 16
8 C -0.50 -12.94 8.77 -34.44 -0.30 -13.24 16
9 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16
10 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16
11 N -0.88 -24.50 12.90 55.43 0.72 -23.78 16
12 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16
13 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16
14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16
15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
16 C -0.15 -3.46 9.37 -26.74 -0.25 -3.71 16
17 C -0.21 -4.33 9.50 -26.74 -0.25 -4.59 16
18 C -0.13 -1.64 4.52 -26.65 -0.12 -1.76 16
19 C -0.13 -1.71 5.72 -26.61 -0.15 -1.86 16
20 C -0.16 -1.88 6.08 -26.65 -0.16 -2.04 16
21 C 0.05 0.61 6.22 -3.84 -0.02 0.58 16
22 N -0.67 -8.23 5.61 -101.18 -0.57 -8.80 16
23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
26 H 0.41 7.40 7.65 -40.82 -0.31 7.09 16
27 H 0.04 0.98 7.83 -51.93 -0.41 0.58 16
28 H 0.07 1.80 8.04 -51.93 -0.42 1.38 16
29 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16
30 H 0.06 1.42 8.03 -51.92 -0.42 1.00 16
31 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16
32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16
33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
34 H 0.08 1.07 7.84 -51.93 -0.41 0.67 16
35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.08 1.30 6.60 -51.93 -0.34 0.95 16
37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
41 H 0.09 1.50 6.38 -51.93 -0.33 1.17 16
42 H 0.34 3.39 8.79 -39.29 -0.35 3.04 16
LS Contribution 332.72 15.07 5.01 5.01
Total: -1.00 -28.65 332.72 -8.67 -37.32
By element:
Atomic # 1 Polarization: 18.72 SS G_CDS: -7.18 Total: 11.55 kcal
Atomic # 6 Polarization: -9.75 SS G_CDS: -1.45 Total: -11.20 kcal
Atomic # 7 Polarization: -46.15 SS G_CDS: -0.12 Total: -46.27 kcal
Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -28.65 -8.67 -37.32 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000404145466.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.838 kcal
(2) G-P(sol) polarization free energy of solvation -28.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.814 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds