Wall clock time and date at job start Mon Mar 30 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46231 * 2 1 4 4 O 1.21273 * 119.99990 * 94.46597 * 3 2 1 5 5 N 1.34783 * 119.99742 * 274.46333 * 3 2 1 6 6 C 1.46498 * 119.99903 * 184.99336 * 5 3 2 7 7 C 1.52995 * 109.47012 * 185.01182 * 6 5 3 8 8 C 1.50703 * 115.54753 * 269.63126 * 7 6 5 9 9 H 1.08006 * 119.99784 * 95.17461 * 8 7 6 10 10 C 1.37876 * 120.00501 * 275.17487 * 8 7 6 11 11 N 1.31510 * 119.99620 * 5.15941 * 10 8 7 12 12 Si 1.86793 * 120.00137 * 185.16400 * 10 8 7 13 13 H 1.48508 * 109.47226 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47337 * 119.99791 * 12 10 8 15 15 H 1.48504 * 109.47372 * 239.99906 * 12 10 8 16 16 C 1.52992 * 117.50097 * 123.93048 * 7 6 5 17 17 C 1.52994 * 117.50214 * 55.30618 * 7 6 5 18 18 C 1.53034 * 109.45266 * 119.97304 * 2 1 3 19 19 C 1.53120 * 109.27646 * 179.18920 * 18 2 1 20 20 C 1.53121 * 109.15864 * 302.34384 * 19 18 2 21 21 C 1.53034 * 109.27582 * 57.65763 * 20 19 18 22 22 N 1.46840 * 109.46031 * 240.01879 * 2 1 3 23 23 H 1.09000 * 109.47437 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46740 * 299.98187 * 1 2 3 25 25 H 1.08994 * 109.47108 * 59.97590 * 1 2 3 26 26 H 0.97001 * 119.99842 * 4.99506 * 5 3 2 27 27 H 1.08999 * 109.47241 * 305.01230 * 6 5 3 28 28 H 1.09003 * 109.46805 * 65.00726 * 6 5 3 29 29 H 0.97000 * 119.99784 * 185.00331 * 11 10 8 30 30 H 1.09010 * 117.49803 * 359.97438 * 16 7 6 31 31 H 1.09003 * 117.50504 * 145.01718 * 16 7 6 32 32 H 1.09002 * 117.49668 * 214.97857 * 17 7 6 33 33 H 1.09004 * 117.49836 * 359.97438 * 17 7 6 34 34 H 1.08999 * 109.50504 * 299.13071 * 18 2 1 35 35 H 1.09003 * 109.50862 * 59.24598 * 18 2 1 36 36 H 1.08994 * 109.52445 * 62.25388 * 19 18 2 37 37 H 1.09003 * 109.52109 * 182.43764 * 19 18 2 38 38 H 1.09000 * 109.49632 * 177.59672 * 20 19 18 39 39 H 1.08994 * 109.50215 * 297.67339 * 20 19 18 40 40 H 1.09004 * 109.45863 * 180.80002 * 21 20 19 41 41 H 1.09001 * 109.46125 * 60.83590 * 21 20 19 42 42 H 1.00896 * 111.00141 * 302.35346 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.3113 1.9654 1.0471 5 7 2.1710 2.0865 -1.1637 6 6 2.7614 3.4273 -1.1748 7 6 2.6891 4.0047 -2.5897 8 6 3.8788 3.7193 -3.4697 9 1 3.8605 2.8776 -4.1463 10 6 4.9906 4.5325 -3.4111 11 7 5.0547 5.4951 -2.5173 12 14 6.4057 4.2672 -4.6012 13 1 6.0896 3.1280 -5.5000 14 1 6.6086 5.4955 -5.4107 15 1 7.6441 3.9667 -3.8388 16 6 1.9847 5.3510 -2.7682 17 6 1.3144 4.0660 -3.2584 18 6 2.0397 -0.7209 1.2500 19 6 3.5707 -0.7363 1.2357 20 6 4.0545 -1.4192 -0.0465 21 6 3.4864 -0.6780 -1.2589 22 7 2.0192 -0.6919 -1.1993 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5136 0.8902 25 1 -0.3633 0.5142 -0.8897 26 1 1.8801 1.6778 -1.9939 27 1 2.2105 4.0725 -0.4905 28 1 3.8030 3.3681 -0.8591 29 1 5.8028 6.1126 -2.5225 30 1 1.5723 5.8253 -1.8776 31 1 2.3817 6.0308 -3.5222 32 1 1.2705 3.9004 -4.3348 33 1 0.4614 3.6946 -2.6903 34 1 1.6893 -0.1981 2.1399 35 1 1.6655 -1.7447 1.2578 36 1 3.9456 0.2867 1.2674 37 1 3.9375 -1.2865 2.1022 38 1 5.1436 -1.3953 -0.0828 39 1 3.7126 -2.4541 -0.0588 40 1 3.8175 -1.1703 -2.1733 41 1 3.8405 0.3529 -1.2530 42 1 1.6644 -1.6354 -1.2424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404145466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:08 Heat of formation + Delta-G solvation = -45.390054 kcal Electronic energy + Delta-G solvation = -21653.032807 eV Core-core repulsion = 18632.079529 eV Total energy + Delta-G solvation = -3020.953278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68975 -39.05994 -38.13589 -35.00856 -33.98215 -33.73000 -32.47497 -28.42426 -27.99975 -27.19532 -24.53818 -23.76007 -22.94142 -21.94728 -21.15341 -20.30327 -18.33654 -17.74100 -16.84211 -16.63507 -16.58354 -15.95407 -15.71851 -15.53437 -15.14619 -14.82179 -14.70173 -14.38408 -13.86093 -13.55462 -13.35394 -13.10223 -12.98659 -12.96033 -12.90038 -12.82259 -12.58057 -12.35007 -12.08908 -12.05148 -11.66716 -11.50441 -11.41301 -10.86936 -10.73474 -10.47911 -10.01235 -9.79188 -9.35879 -8.11708 -6.24350 1.40018 1.43280 1.53428 1.72906 2.39734 2.42627 3.15001 3.18064 3.47438 3.65013 3.89833 3.93939 4.00805 4.14547 4.24364 4.34034 4.50048 4.55125 4.60558 4.67930 4.76630 4.77500 4.85451 4.91404 4.94858 4.97777 5.03291 5.04259 5.13091 5.15839 5.24495 5.28731 5.38261 5.57796 5.62388 5.69779 5.78406 5.89938 6.37050 6.54176 6.81235 6.86523 7.43305 7.45439 8.97156 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.006387 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.811457 B = 4382.860897 C = 5007.847035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.102 3.898 3 C 0.515 3.485 4 O -0.598 6.598 5 N -0.692 5.692 6 C 0.182 3.818 7 C 0.007 3.993 8 C -0.502 4.502 9 H 0.061 0.939 10 C 0.022 3.978 11 N -0.910 5.910 12 Si 0.949 3.051 13 H -0.262 1.262 14 H -0.281 1.281 15 H -0.288 1.288 16 C -0.161 4.161 17 C -0.171 4.171 18 C -0.125 4.125 19 C -0.128 4.128 20 C -0.148 4.148 21 C 0.046 3.954 22 N -0.664 5.664 23 H 0.099 0.901 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.413 0.587 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.259 0.741 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.043 0.957 42 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 -15.868 2.427 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 C 0.302 3.698 4 O -0.480 6.480 5 N -0.341 5.341 6 C 0.058 3.942 7 C 0.006 3.994 8 C -0.540 4.540 9 H 0.079 0.921 10 C -0.178 4.178 11 N -0.547 5.547 12 Si 0.775 3.225 13 H -0.185 1.185 14 H -0.207 1.207 15 H -0.215 1.215 16 C -0.199 4.199 17 C -0.209 4.209 18 C -0.164 4.164 19 C -0.166 4.166 20 C -0.187 4.187 21 C -0.084 4.084 22 N -0.297 5.297 23 H 0.118 0.882 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.250 0.750 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.512 -14.810 2.818 16.844 hybrid contribution 1.422 0.100 0.060 1.427 sum -6.090 -14.711 2.878 16.179 Atomic orbital electron populations 1.21781 0.89746 1.04772 1.02683 1.21118 0.97818 0.89025 0.91297 1.21092 0.76688 0.89053 0.83000 1.90627 1.53245 1.70905 1.33197 1.46021 1.60948 1.17110 1.10043 1.20582 0.94804 0.82330 0.96521 1.19042 0.91408 0.97226 0.91688 1.20753 0.98652 1.13148 1.21429 0.92120 1.25709 1.00192 0.95471 0.96418 1.70148 1.32221 1.18013 1.34351 0.85646 0.79294 0.78329 0.79236 1.18543 1.20687 1.21459 1.22469 1.04762 0.91480 1.01178 1.22942 0.95913 1.01826 1.00173 1.22027 0.95622 1.01389 0.97366 1.21617 0.96284 0.99791 0.98895 1.22190 1.01237 1.00446 0.94796 1.22118 0.87511 1.00236 0.98499 1.60540 1.08686 1.23582 1.36934 0.88192 0.92242 0.91415 0.74963 0.95578 0.95780 0.93223 0.91441 0.91729 0.89335 0.89206 0.92077 0.87930 0.95339 0.90702 0.91826 0.89099 0.88615 0.93864 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.73 71.98 0.63 -1.99 16 2 C 0.10 2.59 0.87 2.81 0.00 2.59 16 3 C 0.51 19.17 4.72 87.66 0.41 19.58 16 4 O -0.60 -27.32 15.06 -3.01 -0.05 -27.37 16 5 N -0.69 -27.04 4.36 -463.07 -2.02 -29.06 16 6 C 0.18 8.77 5.71 86.38 0.49 9.26 16 7 C 0.01 0.34 1.46 -52.93 -0.08 0.27 16 8 C -0.50 -26.57 8.77 25.60 0.22 -26.34 16 9 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 10 C 0.02 1.21 5.40 84.66 0.46 1.67 16 11 N -0.91 -52.63 12.90 21.45 0.28 -52.35 16 12 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 13 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 16 C -0.16 -7.51 9.37 30.59 0.29 -7.22 16 17 C -0.17 -6.90 9.50 30.59 0.29 -6.61 16 18 C -0.12 -2.91 4.52 30.65 0.14 -2.78 16 19 C -0.13 -3.38 5.72 30.67 0.18 -3.20 16 20 C -0.15 -3.25 6.08 30.65 0.19 -3.06 16 21 C 0.05 1.17 6.22 86.32 0.54 1.70 16 22 N -0.66 -14.39 5.61 -474.02 -2.66 -17.05 16 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.41 14.81 7.65 -92.71 -0.71 14.10 16 27 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16 28 H 0.02 1.35 8.04 -2.39 -0.02 1.33 16 29 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 30 H 0.07 3.05 8.03 -2.38 -0.02 3.03 16 31 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 34 H 0.06 1.64 7.84 -2.39 -0.02 1.62 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.03 1.01 6.60 -2.39 -0.02 0.99 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.04 1.50 6.38 -2.39 -0.02 1.48 16 42 H 0.36 5.44 8.79 -89.70 -0.79 4.65 16 Total: -1.00 -65.49 332.72 0.84 -64.64 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.49 Total: 32.25 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 3.76 Total: -16.14 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -4.40 Total: -98.46 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.49 0.84 -64.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404145466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.253 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds