Wall clock time and date at job start Mon Mar 30 2020 05:47:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50701 * 109.46231 * 2 1
4 4 O 1.21273 * 119.99990 * 94.46597 * 3 2 1
5 5 N 1.34783 * 119.99742 * 274.46333 * 3 2 1
6 6 C 1.46498 * 119.99903 * 184.99336 * 5 3 2
7 7 C 1.52995 * 109.47012 * 185.01182 * 6 5 3
8 8 C 1.50703 * 115.54753 * 269.63126 * 7 6 5
9 9 H 1.08006 * 119.99784 * 95.17461 * 8 7 6
10 10 C 1.37876 * 120.00501 * 275.17487 * 8 7 6
11 11 N 1.31510 * 119.99620 * 5.15941 * 10 8 7
12 12 Si 1.86793 * 120.00137 * 185.16400 * 10 8 7
13 13 H 1.48508 * 109.47226 * 359.97438 * 12 10 8
14 14 H 1.48499 * 109.47337 * 119.99791 * 12 10 8
15 15 H 1.48504 * 109.47372 * 239.99906 * 12 10 8
16 16 C 1.52992 * 117.50097 * 123.93048 * 7 6 5
17 17 C 1.52994 * 117.50214 * 55.30618 * 7 6 5
18 18 C 1.53034 * 109.45266 * 119.97304 * 2 1 3
19 19 C 1.53120 * 109.27646 * 179.18920 * 18 2 1
20 20 C 1.53121 * 109.15864 * 302.34384 * 19 18 2
21 21 C 1.53034 * 109.27582 * 57.65763 * 20 19 18
22 22 N 1.46840 * 109.46031 * 240.01879 * 2 1 3
23 23 H 1.09000 * 109.47437 * 179.97438 * 1 2 3
24 24 H 1.09002 * 109.46740 * 299.98187 * 1 2 3
25 25 H 1.08994 * 109.47108 * 59.97590 * 1 2 3
26 26 H 0.97001 * 119.99842 * 4.99506 * 5 3 2
27 27 H 1.08999 * 109.47241 * 305.01230 * 6 5 3
28 28 H 1.09003 * 109.46805 * 65.00726 * 6 5 3
29 29 H 0.97000 * 119.99784 * 185.00331 * 11 10 8
30 30 H 1.09010 * 117.49803 * 359.97438 * 16 7 6
31 31 H 1.09003 * 117.50504 * 145.01718 * 16 7 6
32 32 H 1.09002 * 117.49668 * 214.97857 * 17 7 6
33 33 H 1.09004 * 117.49836 * 359.97438 * 17 7 6
34 34 H 1.08999 * 109.50504 * 299.13071 * 18 2 1
35 35 H 1.09003 * 109.50862 * 59.24598 * 18 2 1
36 36 H 1.08994 * 109.52445 * 62.25388 * 19 18 2
37 37 H 1.09003 * 109.52109 * 182.43764 * 19 18 2
38 38 H 1.09000 * 109.49632 * 177.59672 * 20 19 18
39 39 H 1.08994 * 109.50215 * 297.67339 * 20 19 18
40 40 H 1.09004 * 109.45863 * 180.80002 * 21 20 19
41 41 H 1.09001 * 109.46125 * 60.83590 * 21 20 19
42 42 H 1.00896 * 111.00141 * 302.35346 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 8 2.3113 1.9654 1.0471
5 7 2.1710 2.0865 -1.1637
6 6 2.7614 3.4273 -1.1748
7 6 2.6891 4.0047 -2.5897
8 6 3.8788 3.7193 -3.4697
9 1 3.8605 2.8776 -4.1463
10 6 4.9906 4.5325 -3.4111
11 7 5.0547 5.4951 -2.5173
12 14 6.4057 4.2672 -4.6012
13 1 6.0896 3.1280 -5.5000
14 1 6.6086 5.4955 -5.4107
15 1 7.6441 3.9667 -3.8388
16 6 1.9847 5.3510 -2.7682
17 6 1.3144 4.0660 -3.2584
18 6 2.0397 -0.7209 1.2500
19 6 3.5707 -0.7363 1.2357
20 6 4.0545 -1.4192 -0.0465
21 6 3.4864 -0.6780 -1.2589
22 7 2.0192 -0.6919 -1.1993
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3633 0.5136 0.8902
25 1 -0.3633 0.5142 -0.8897
26 1 1.8801 1.6778 -1.9939
27 1 2.2105 4.0725 -0.4905
28 1 3.8030 3.3681 -0.8591
29 1 5.8028 6.1126 -2.5225
30 1 1.5723 5.8253 -1.8776
31 1 2.3817 6.0308 -3.5222
32 1 1.2705 3.9004 -4.3348
33 1 0.4614 3.6946 -2.6903
34 1 1.6893 -0.1981 2.1399
35 1 1.6655 -1.7447 1.2578
36 1 3.9456 0.2867 1.2674
37 1 3.9375 -1.2865 2.1022
38 1 5.1436 -1.3953 -0.0828
39 1 3.7126 -2.4541 -0.0588
40 1 3.8175 -1.1703 -2.1733
41 1 3.8405 0.3529 -1.2530
42 1 1.6644 -1.6354 -1.2424
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000404145466.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:47:08
Heat of formation + Delta-G solvation = -45.390054 kcal
Electronic energy + Delta-G solvation = -21653.032807 eV
Core-core repulsion = 18632.079529 eV
Total energy + Delta-G solvation = -3020.953278 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.68975 -39.05994 -38.13589 -35.00856 -33.98215 -33.73000 -32.47497 -28.42426
-27.99975 -27.19532 -24.53818 -23.76007 -22.94142 -21.94728 -21.15341 -20.30327
-18.33654 -17.74100 -16.84211 -16.63507 -16.58354 -15.95407 -15.71851 -15.53437
-15.14619 -14.82179 -14.70173 -14.38408 -13.86093 -13.55462 -13.35394 -13.10223
-12.98659 -12.96033 -12.90038 -12.82259 -12.58057 -12.35007 -12.08908 -12.05148
-11.66716 -11.50441 -11.41301 -10.86936 -10.73474 -10.47911 -10.01235 -9.79188
-9.35879 -8.11708 -6.24350 1.40018 1.43280 1.53428 1.72906 2.39734
2.42627 3.15001 3.18064 3.47438 3.65013 3.89833 3.93939 4.00805
4.14547 4.24364 4.34034 4.50048 4.55125 4.60558 4.67930 4.76630
4.77500 4.85451 4.91404 4.94858 4.97777 5.03291 5.04259 5.13091
5.15839 5.24495 5.28731 5.38261 5.57796 5.62388 5.69779 5.78406
5.89938 6.37050 6.54176 6.81235 6.86523 7.43305 7.45439 8.97156
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.020662 B = 0.006387 C = 0.005590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1354.811457 B = 4382.860897 C = 5007.847035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.102 3.898
3 C 0.515 3.485
4 O -0.598 6.598
5 N -0.692 5.692
6 C 0.182 3.818
7 C 0.007 3.993
8 C -0.502 4.502
9 H 0.061 0.939
10 C 0.022 3.978
11 N -0.910 5.910
12 Si 0.949 3.051
13 H -0.262 1.262
14 H -0.281 1.281
15 H -0.288 1.288
16 C -0.161 4.161
17 C -0.171 4.171
18 C -0.125 4.125
19 C -0.128 4.128
20 C -0.148 4.148
21 C 0.046 3.954
22 N -0.664 5.664
23 H 0.099 0.901
24 H 0.059 0.941
25 H 0.067 0.933
26 H 0.413 0.587
27 H 0.026 0.974
28 H 0.024 0.976
29 H 0.259 0.741
30 H 0.067 0.933
31 H 0.064 0.936
32 H 0.088 0.912
33 H 0.090 0.910
34 H 0.060 0.940
35 H 0.102 0.898
36 H 0.028 0.972
37 H 0.074 0.926
38 H 0.063 0.937
39 H 0.090 0.910
40 H 0.096 0.904
41 H 0.043 0.957
42 H 0.365 0.635
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.794 -15.868 2.427 17.844
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.007 3.993
3 C 0.302 3.698
4 O -0.480 6.480
5 N -0.341 5.341
6 C 0.058 3.942
7 C 0.006 3.994
8 C -0.540 4.540
9 H 0.079 0.921
10 C -0.178 4.178
11 N -0.547 5.547
12 Si 0.775 3.225
13 H -0.185 1.185
14 H -0.207 1.207
15 H -0.215 1.215
16 C -0.199 4.199
17 C -0.209 4.209
18 C -0.164 4.164
19 C -0.166 4.166
20 C -0.187 4.187
21 C -0.084 4.084
22 N -0.297 5.297
23 H 0.118 0.882
24 H 0.078 0.922
25 H 0.086 0.914
26 H 0.250 0.750
27 H 0.044 0.956
28 H 0.042 0.958
29 H 0.068 0.932
30 H 0.086 0.914
31 H 0.083 0.917
32 H 0.107 0.893
33 H 0.108 0.892
34 H 0.079 0.921
35 H 0.121 0.879
36 H 0.047 0.953
37 H 0.093 0.907
38 H 0.082 0.918
39 H 0.109 0.891
40 H 0.114 0.886
41 H 0.061 0.939
42 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -7.512 -14.810 2.818 16.844
hybrid contribution 1.422 0.100 0.060 1.427
sum -6.090 -14.711 2.878 16.179
Atomic orbital electron populations
1.21781 0.89746 1.04772 1.02683 1.21118 0.97818 0.89025 0.91297
1.21092 0.76688 0.89053 0.83000 1.90627 1.53245 1.70905 1.33197
1.46021 1.60948 1.17110 1.10043 1.20582 0.94804 0.82330 0.96521
1.19042 0.91408 0.97226 0.91688 1.20753 0.98652 1.13148 1.21429
0.92120 1.25709 1.00192 0.95471 0.96418 1.70148 1.32221 1.18013
1.34351 0.85646 0.79294 0.78329 0.79236 1.18543 1.20687 1.21459
1.22469 1.04762 0.91480 1.01178 1.22942 0.95913 1.01826 1.00173
1.22027 0.95622 1.01389 0.97366 1.21617 0.96284 0.99791 0.98895
1.22190 1.01237 1.00446 0.94796 1.22118 0.87511 1.00236 0.98499
1.60540 1.08686 1.23582 1.36934 0.88192 0.92242 0.91415 0.74963
0.95578 0.95780 0.93223 0.91441 0.91729 0.89335 0.89206 0.92077
0.87930 0.95339 0.90702 0.91826 0.89099 0.88615 0.93864 0.81349
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.62 8.73 71.98 0.63 -1.99 16
2 C 0.10 2.59 0.87 2.81 0.00 2.59 16
3 C 0.51 19.17 4.72 87.66 0.41 19.58 16
4 O -0.60 -27.32 15.06 -3.01 -0.05 -27.37 16
5 N -0.69 -27.04 4.36 -463.07 -2.02 -29.06 16
6 C 0.18 8.77 5.71 86.38 0.49 9.26 16
7 C 0.01 0.34 1.46 -52.93 -0.08 0.27 16
8 C -0.50 -26.57 8.77 25.60 0.22 -26.34 16
9 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16
10 C 0.02 1.21 5.40 84.66 0.46 1.67 16
11 N -0.91 -52.63 12.90 21.45 0.28 -52.35 16
12 Si 0.95 43.04 29.54 68.60 2.03 45.07 16
13 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16
14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16
15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16
16 C -0.16 -7.51 9.37 30.59 0.29 -7.22 16
17 C -0.17 -6.90 9.50 30.59 0.29 -6.61 16
18 C -0.12 -2.91 4.52 30.65 0.14 -2.78 16
19 C -0.13 -3.38 5.72 30.67 0.18 -3.20 16
20 C -0.15 -3.25 6.08 30.65 0.19 -3.06 16
21 C 0.05 1.17 6.22 86.32 0.54 1.70 16
22 N -0.66 -14.39 5.61 -474.02 -2.66 -17.05 16
23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
24 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16
25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
26 H 0.41 14.81 7.65 -92.71 -0.71 14.10 16
27 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16
28 H 0.02 1.35 8.04 -2.39 -0.02 1.33 16
29 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16
30 H 0.07 3.05 8.03 -2.38 -0.02 3.03 16
31 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16
32 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16
33 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16
34 H 0.06 1.64 7.84 -2.39 -0.02 1.62 16
35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16
36 H 0.03 1.01 6.60 -2.39 -0.02 0.99 16
37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
40 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16
41 H 0.04 1.50 6.38 -2.39 -0.02 1.48 16
42 H 0.36 5.44 8.79 -89.70 -0.79 4.65 16
Total: -1.00 -65.49 332.72 0.84 -64.64
By element:
Atomic # 1 Polarization: 32.74 SS G_CDS: -0.49 Total: 32.25 kcal
Atomic # 6 Polarization: -19.89 SS G_CDS: 3.76 Total: -16.14 kcal
Atomic # 7 Polarization: -94.06 SS G_CDS: -4.40 Total: -98.46 kcal
Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.37 kcal
Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal
Total: -65.49 0.84 -64.64 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000404145466.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.253 kcal
(2) G-P(sol) polarization free energy of solvation -65.486 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.234 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.643 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds