Wall clock time and date at job start Mon Mar 30 2020 05:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00105 * 2 1 4 4 H 1.48496 * 109.47666 * 270.00207 * 3 2 1 5 5 H 1.48501 * 109.46741 * 30.00434 * 3 2 1 6 6 H 1.48498 * 109.47122 * 149.99947 * 3 2 1 7 7 C 1.37875 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 186.23812 * 7 2 1 9 9 C 1.50701 * 119.99876 * 6.23613 * 7 2 1 10 10 C 1.53008 * 115.55019 * 274.85669 * 9 7 2 11 11 N 1.46505 * 109.46880 * 294.91319 * 10 9 7 12 12 C 1.34778 * 119.99619 * 183.90231 * 11 10 9 13 13 O 1.21279 * 120.00028 * 4.90966 * 12 11 10 14 14 C 1.50695 * 119.99715 * 184.91250 * 12 11 10 15 15 H 1.09001 * 110.02015 * 25.86184 * 14 12 11 16 16 C 1.54269 * 110.02953 * 147.30419 * 14 12 11 17 17 C 1.54896 * 104.19617 * 142.89743 * 16 14 12 18 18 C 1.54894 * 102.74492 * 322.05446 * 17 16 14 19 19 C 1.53876 * 110.03242 * 264.47082 * 14 12 11 20 20 H 1.08994 * 110.03091 * 121.43486 * 19 14 12 21 21 C 1.52997 * 110.02895 * 0.04782 * 19 14 12 22 22 N 1.46909 * 109.46706 * 174.81694 * 21 19 14 23 23 C 1.52999 * 117.49904 * 129.18731 * 9 7 2 24 24 C 1.52997 * 117.50228 * 60.52757 * 9 7 2 25 25 H 0.97001 * 119.99692 * 354.98960 * 1 2 3 26 26 H 1.08996 * 109.46778 * 54.90933 * 10 9 7 27 27 H 1.09000 * 109.47028 * 174.91682 * 10 9 7 28 28 H 0.96995 * 120.00307 * 3.89515 * 11 10 9 29 29 H 1.09008 * 110.48583 * 261.56716 * 16 14 12 30 30 H 1.08995 * 110.49139 * 24.21746 * 16 14 12 31 31 H 1.09000 * 110.75517 * 203.74555 * 17 16 14 32 32 H 1.08992 * 110.91605 * 80.44248 * 17 16 14 33 33 H 1.08999 * 110.48820 * 279.26422 * 18 17 16 34 34 H 1.09000 * 110.59973 * 156.67426 * 18 17 16 35 35 H 1.09000 * 109.47564 * 294.81399 * 21 19 14 36 36 H 1.08993 * 109.47159 * 54.82280 * 21 19 14 37 37 H 1.00903 * 110.99681 * 56.05003 * 22 21 19 38 38 H 1.00901 * 110.99616 * 180.02562 * 22 21 19 39 39 H 1.09001 * 117.50319 * 0.02562 * 23 9 7 40 40 H 1.09001 * 117.49965 * 145.01717 * 23 9 7 41 41 H 1.08993 * 117.50184 * 214.98098 * 24 9 7 42 42 H 1.09000 * 117.49567 * 359.97374 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.1011 9 6 1.2577 -2.4952 -0.1429 10 6 0.7004 -3.0817 1.1558 11 7 1.8086 -3.4505 2.0402 12 6 1.5585 -4.0625 3.2146 13 8 0.4255 -4.3882 3.4995 14 6 2.6867 -4.3422 4.1737 15 1 3.4961 -3.6295 4.0157 16 6 2.1786 -4.2526 5.6276 17 6 2.9474 -5.3749 6.3685 18 6 2.9904 -6.5113 5.3169 19 6 3.2028 -5.7783 3.9761 20 1 4.2629 -5.7625 3.7231 21 6 2.4097 -6.4721 2.8669 22 7 2.9914 -7.7951 2.6032 23 6 1.7470 -3.4776 -1.2089 24 6 0.4422 -2.7057 -1.4202 25 1 -0.4850 0.8369 0.0734 26 1 0.0729 -2.3398 1.6496 27 1 0.1064 -3.9671 0.9291 28 1 2.7224 -3.2542 1.7805 29 1 2.4180 -3.2793 6.0561 30 1 1.1048 -4.4348 5.6684 31 1 2.4042 -5.6926 7.2585 32 1 3.9550 -5.0503 6.6280 33 1 2.0476 -7.0582 5.3074 34 1 3.8210 -7.1880 5.5173 35 1 1.3720 -6.5873 3.1797 36 1 2.4510 -5.8698 1.9595 37 1 3.0238 -8.3502 3.4453 38 1 2.4851 -8.2738 1.8734 39 1 2.6094 -3.1830 -1.8070 40 1 1.6716 -4.5417 -0.9852 41 1 -0.4911 -3.2622 -1.3355 42 1 0.4455 -1.9028 -2.1574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404154325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:50 Heat of formation + Delta-G solvation = -36.128457 kcal Electronic energy + Delta-G solvation = -21115.666733 eV Core-core repulsion = 18095.115068 eV Total energy + Delta-G solvation = -3020.551665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09212 -37.50311 -36.44321 -34.05789 -33.24458 -31.99102 -29.59176 -28.61172 -26.21354 -25.15142 -23.63447 -21.38351 -20.98211 -20.53605 -19.49181 -18.57529 -16.72725 -16.35017 -16.00410 -15.50812 -15.09115 -14.75193 -14.48475 -14.26200 -13.93864 -13.50215 -13.15815 -12.91946 -12.59531 -12.56264 -11.81009 -11.64395 -11.49841 -11.06462 -11.03571 -11.00077 -10.90581 -10.70170 -10.63717 -10.54944 -10.51652 -10.27954 -9.65034 -9.20663 -8.98317 -8.69726 -8.52232 -8.24440 -8.06714 -6.09801 -4.18587 3.19555 3.24480 3.32458 3.33659 3.89426 4.33827 4.41381 4.54323 4.69591 4.94399 5.18285 5.27022 5.34379 5.34982 5.45571 5.53291 5.59235 5.63544 5.70450 5.85959 5.91531 5.97944 6.01981 6.07895 6.21440 6.32250 6.34835 6.42545 6.46926 6.56740 6.68775 6.88522 7.08006 7.09387 7.30104 7.39768 7.41759 7.47505 7.79690 8.31909 8.33672 8.82288 8.90853 9.48499 10.98143 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.005411 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.475202 B = 5173.761561 C = 5821.119988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.164 3.836 11 N -0.704 5.704 12 C 0.514 3.486 13 O -0.559 6.559 14 C -0.111 4.111 15 H 0.090 0.910 16 C -0.112 4.112 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.074 4.074 20 H 0.085 0.915 21 C 0.054 3.946 22 N -0.849 5.849 23 C -0.209 4.209 24 C -0.149 4.149 25 H 0.262 0.738 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.400 0.600 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.335 0.665 38 H 0.340 0.660 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -10.892 8.339 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.041 3.959 11 N -0.352 5.352 12 C 0.300 3.700 13 O -0.439 6.439 14 C -0.133 4.133 15 H 0.109 0.891 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.093 4.093 20 H 0.104 0.896 21 C -0.076 4.076 22 N -0.378 5.378 23 C -0.247 4.247 24 C -0.187 4.187 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.234 0.766 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.829 -10.541 8.238 14.593 hybrid contribution -0.139 0.820 0.020 0.832 sum 5.689 -9.721 8.258 13.966 Atomic orbital electron populations 1.69978 1.05913 1.26937 1.48268 1.24987 0.94797 0.98959 0.94286 0.86632 0.79904 0.83474 0.78163 1.20598 1.21261 1.19866 1.20351 0.92813 0.88604 1.52039 0.92161 1.19038 0.98549 0.93912 0.85794 1.20963 0.87426 0.96774 0.90773 1.46087 1.11544 1.58500 1.19047 1.20310 0.89859 0.77482 0.82391 1.90624 1.23451 1.53299 1.76487 1.22008 0.97405 0.98085 0.95843 0.89118 1.22347 1.01735 0.98746 0.92172 1.22461 1.00214 0.95564 0.97677 1.22434 1.01418 0.97616 0.94165 1.21675 1.00327 0.92341 0.94976 0.89619 1.22141 0.96070 0.90637 0.98760 1.58767 1.60442 1.05471 1.13129 1.23008 0.98623 0.95611 1.07427 1.22490 0.92264 1.01106 1.02827 0.92832 0.91187 0.94566 0.76564 0.91448 0.89692 0.91572 0.91498 0.91776 0.91511 0.94196 0.90392 0.85280 0.84794 0.90353 0.91724 0.91754 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.22 12.92 55.43 0.72 -23.51 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.50 -12.79 8.60 -34.44 -0.30 -13.09 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.03 0.65 1.39 -155.66 -0.22 0.43 16 10 C 0.16 3.70 5.52 -4.03 -0.02 3.68 16 11 N -0.70 -13.50 5.03 -60.29 -0.30 -13.80 16 12 C 0.51 9.35 4.66 -10.99 -0.05 9.30 16 13 O -0.56 -12.00 14.95 5.56 0.08 -11.91 16 14 C -0.11 -1.55 3.29 -90.65 -0.30 -1.85 16 15 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 16 C -0.11 -1.46 6.32 -25.07 -0.16 -1.61 16 17 C -0.12 -1.25 6.91 -24.73 -0.17 -1.42 16 18 C -0.12 -1.25 5.57 -25.07 -0.14 -1.39 16 19 C -0.07 -0.91 3.15 -89.50 -0.28 -1.19 16 20 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 21 C 0.05 0.75 4.97 -3.82 -0.02 0.73 16 22 N -0.85 -9.64 9.62 -10.37 -0.10 -9.74 16 23 C -0.21 -4.36 9.96 -26.70 -0.27 -4.62 16 24 C -0.15 -3.40 9.43 -26.70 -0.25 -3.65 16 25 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 26 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 27 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.40 7.18 8.34 -40.82 -0.34 6.84 16 29 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.08 1.29 6.92 -51.93 -0.36 0.93 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.71 7.76 -51.93 -0.40 0.31 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.63 7.03 -51.93 -0.37 0.26 16 36 H 0.08 1.22 6.88 -51.93 -0.36 0.86 16 37 H 0.34 3.24 8.24 -39.29 -0.32 2.91 16 38 H 0.34 3.53 9.08 -39.29 -0.36 3.17 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -28.69 336.54 -8.94 -37.63 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -7.12 Total: 13.64 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.27 Total: -12.84 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.31 Total: -47.05 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.69 -8.94 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404154325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.502 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds