Wall clock time and date at job start Mon Mar 30 2020 05:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00105 * 2 1 4 4 H 1.48496 * 109.47666 * 270.00207 * 3 2 1 5 5 H 1.48501 * 109.46741 * 30.00434 * 3 2 1 6 6 H 1.48498 * 109.47122 * 149.99947 * 3 2 1 7 7 C 1.37875 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 186.23812 * 7 2 1 9 9 C 1.50701 * 119.99876 * 6.23613 * 7 2 1 10 10 C 1.53008 * 115.55019 * 274.85669 * 9 7 2 11 11 N 1.46505 * 109.46880 * 294.91319 * 10 9 7 12 12 C 1.34778 * 119.99619 * 183.90231 * 11 10 9 13 13 O 1.21279 * 120.00028 * 4.90966 * 12 11 10 14 14 C 1.50695 * 119.99715 * 184.91250 * 12 11 10 15 15 H 1.09001 * 110.02015 * 25.86184 * 14 12 11 16 16 C 1.54269 * 110.02953 * 147.30419 * 14 12 11 17 17 C 1.54896 * 104.19617 * 142.89743 * 16 14 12 18 18 C 1.54894 * 102.74492 * 322.05446 * 17 16 14 19 19 C 1.53876 * 110.03242 * 264.47082 * 14 12 11 20 20 H 1.08994 * 110.03091 * 121.43486 * 19 14 12 21 21 C 1.52997 * 110.02895 * 0.04782 * 19 14 12 22 22 N 1.46909 * 109.46706 * 174.81694 * 21 19 14 23 23 C 1.52999 * 117.49904 * 129.18731 * 9 7 2 24 24 C 1.52997 * 117.50228 * 60.52757 * 9 7 2 25 25 H 0.97001 * 119.99692 * 354.98960 * 1 2 3 26 26 H 1.08996 * 109.46778 * 54.90933 * 10 9 7 27 27 H 1.09000 * 109.47028 * 174.91682 * 10 9 7 28 28 H 0.96995 * 120.00307 * 3.89515 * 11 10 9 29 29 H 1.09008 * 110.48583 * 261.56716 * 16 14 12 30 30 H 1.08995 * 110.49139 * 24.21746 * 16 14 12 31 31 H 1.09000 * 110.75517 * 203.74555 * 17 16 14 32 32 H 1.08992 * 110.91605 * 80.44248 * 17 16 14 33 33 H 1.08999 * 110.48820 * 279.26422 * 18 17 16 34 34 H 1.09000 * 110.59973 * 156.67426 * 18 17 16 35 35 H 1.09000 * 109.47564 * 294.81399 * 21 19 14 36 36 H 1.08993 * 109.47159 * 54.82280 * 21 19 14 37 37 H 1.00903 * 110.99681 * 56.05003 * 22 21 19 38 38 H 1.00901 * 110.99616 * 180.02562 * 22 21 19 39 39 H 1.09001 * 117.50319 * 0.02562 * 23 9 7 40 40 H 1.09001 * 117.49965 * 145.01717 * 23 9 7 41 41 H 1.08993 * 117.50184 * 214.98098 * 24 9 7 42 42 H 1.09000 * 117.49567 * 359.97374 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.1011 9 6 1.2577 -2.4952 -0.1429 10 6 0.7004 -3.0817 1.1558 11 7 1.8086 -3.4505 2.0402 12 6 1.5585 -4.0625 3.2146 13 8 0.4255 -4.3882 3.4995 14 6 2.6867 -4.3422 4.1737 15 1 3.4961 -3.6295 4.0157 16 6 2.1786 -4.2526 5.6276 17 6 2.9474 -5.3749 6.3685 18 6 2.9904 -6.5113 5.3169 19 6 3.2028 -5.7783 3.9761 20 1 4.2629 -5.7625 3.7231 21 6 2.4097 -6.4721 2.8669 22 7 2.9914 -7.7951 2.6032 23 6 1.7470 -3.4776 -1.2089 24 6 0.4422 -2.7057 -1.4202 25 1 -0.4850 0.8369 0.0734 26 1 0.0729 -2.3398 1.6496 27 1 0.1064 -3.9671 0.9291 28 1 2.7224 -3.2542 1.7805 29 1 2.4180 -3.2793 6.0561 30 1 1.1048 -4.4348 5.6684 31 1 2.4042 -5.6926 7.2585 32 1 3.9550 -5.0503 6.6280 33 1 2.0476 -7.0582 5.3074 34 1 3.8210 -7.1880 5.5173 35 1 1.3720 -6.5873 3.1797 36 1 2.4510 -5.8698 1.9595 37 1 3.0238 -8.3502 3.4453 38 1 2.4851 -8.2738 1.8734 39 1 2.6094 -3.1830 -1.8070 40 1 1.6716 -4.5417 -0.9852 41 1 -0.4911 -3.2622 -1.3355 42 1 0.4455 -1.9028 -2.1574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404154325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:49 Heat of formation + Delta-G solvation = -55.334209 kcal Electronic energy + Delta-G solvation = -21116.499557 eV Core-core repulsion = 18095.115068 eV Total energy + Delta-G solvation = -3021.384489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41765 -38.96949 -38.02269 -35.09221 -34.85243 -33.98289 -30.71512 -29.57965 -27.99610 -26.99661 -24.68407 -23.04595 -22.40461 -21.51694 -21.28711 -19.99412 -18.22057 -17.82401 -17.26846 -16.72556 -16.67260 -16.42275 -15.88416 -15.61169 -15.26628 -14.85828 -14.70858 -14.26868 -13.97163 -13.60375 -13.58420 -13.47041 -12.95732 -12.81020 -12.62333 -12.37040 -12.08022 -12.04146 -11.93215 -11.68271 -11.58364 -11.49096 -11.44601 -10.88337 -10.75831 -10.47453 -10.04461 -9.84650 -9.62391 -8.10976 -6.24502 1.42128 1.44581 1.52709 1.74047 2.38708 2.44441 3.17424 3.41284 3.48012 3.56355 3.70554 3.95540 4.19822 4.24815 4.33083 4.40749 4.52412 4.54683 4.55402 4.62664 4.66307 4.70483 4.75026 4.88452 4.95488 4.97420 5.02157 5.07299 5.21564 5.24194 5.26455 5.36019 5.50152 5.56374 5.58556 5.69246 5.77209 6.14628 6.35538 6.56858 6.78813 6.84678 7.40674 7.45594 8.96781 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.005411 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.475202 B = 5173.761561 C = 5821.119988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.065 0.935 9 C 0.007 3.993 10 C 0.182 3.818 11 N -0.701 5.701 12 C 0.513 3.487 13 O -0.596 6.596 14 C -0.108 4.108 15 H 0.109 0.891 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.069 4.069 20 H 0.101 0.899 21 C 0.061 3.939 22 N -0.843 5.843 23 C -0.176 4.176 24 C -0.160 4.160 25 H 0.259 0.741 26 H 0.027 0.973 27 H 0.030 0.970 28 H 0.408 0.592 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.012 0.988 36 H 0.056 0.944 37 H 0.348 0.652 38 H 0.346 0.654 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.895 -11.850 9.258 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.542 4.542 8 H 0.083 0.917 9 C 0.006 3.994 10 C 0.058 3.942 11 N -0.349 5.349 12 C 0.301 3.699 13 O -0.478 6.478 14 C -0.130 4.130 15 H 0.127 0.873 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.088 4.088 20 H 0.119 0.881 21 C -0.070 4.070 22 N -0.374 5.374 23 C -0.213 4.213 24 C -0.199 4.199 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.244 0.756 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.589 -11.519 9.162 17.041 hybrid contribution -1.023 1.066 -0.278 1.503 sum 7.566 -10.453 8.884 15.666 Atomic orbital electron populations 1.70110 1.07357 1.27354 1.49875 1.25712 0.95434 1.02127 0.94312 0.85680 0.78970 0.79627 0.78065 1.20398 1.21746 1.18670 1.20660 0.93116 0.89483 1.50916 0.91725 1.19074 0.99532 0.94493 0.86318 1.20483 0.87906 0.95110 0.90729 1.45990 1.10965 1.58781 1.19209 1.21117 0.90568 0.75997 0.82206 1.90606 1.25505 1.54553 1.77104 1.22123 0.95982 0.99896 0.94962 0.87271 1.22374 1.00410 1.00577 0.92026 1.22452 1.00967 0.94003 0.97523 1.22430 1.01941 0.97872 0.92965 1.21708 1.00568 0.91016 0.95547 0.88053 1.21955 0.95020 0.91790 0.98203 1.58745 1.59851 1.04788 1.13975 1.22979 0.97365 0.96090 1.04846 1.22425 0.93671 1.01420 1.02335 0.93218 0.95494 0.95166 0.75619 0.90600 0.92604 0.90486 0.89367 0.92804 0.88975 0.97007 0.92563 0.83915 0.84202 0.89492 0.89661 0.91358 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 12.92 21.45 0.28 -51.34 16 2 C 0.02 1.31 5.39 84.65 0.46 1.77 16 3 Si 0.95 42.02 29.55 68.60 2.03 44.05 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.50 -25.67 8.60 25.60 0.22 -25.45 16 8 H 0.06 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.01 0.31 1.39 -52.93 -0.07 0.23 16 10 C 0.18 8.46 5.52 86.38 0.48 8.94 16 11 N -0.70 -27.04 5.03 -463.05 -2.33 -29.37 16 12 C 0.51 18.83 4.66 87.66 0.41 19.23 16 13 O -0.60 -26.51 14.95 -3.03 -0.05 -26.55 16 14 C -0.11 -2.85 3.29 -10.82 -0.04 -2.89 16 15 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 16 C -0.12 -2.85 6.32 31.67 0.20 -2.65 16 17 C -0.11 -1.95 6.91 31.89 0.22 -1.73 16 18 C -0.11 -2.07 5.57 31.67 0.18 -1.90 16 19 C -0.07 -1.54 3.15 -10.07 -0.03 -1.57 16 20 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 21 C 0.06 1.63 4.97 86.30 0.43 2.06 16 22 N -0.84 -17.50 9.62 -186.71 -1.80 -19.30 16 23 C -0.18 -7.08 9.96 30.62 0.30 -6.77 16 24 C -0.16 -7.40 9.43 30.62 0.29 -7.11 16 25 H 0.26 14.20 8.32 -92.71 -0.77 13.42 16 26 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 28 H 0.41 14.33 8.34 -92.71 -0.77 13.55 16 29 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 1.71 6.92 -2.39 -0.02 1.69 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.10 7.76 -2.39 -0.02 1.08 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.01 0.37 7.03 -2.39 -0.02 0.36 16 36 H 0.06 1.73 6.88 -2.39 -0.02 1.71 16 37 H 0.35 5.85 8.24 -89.69 -0.74 5.11 16 38 H 0.35 6.65 9.08 -89.69 -0.81 5.83 16 39 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -63.14 336.54 -0.13 -63.27 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -1.30 Total: 37.09 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.04 Total: -17.84 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.85 Total: -100.02 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -63.14 -0.13 -63.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404154325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.935 kcal (2) G-P(sol) polarization free energy of solvation -63.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds