Wall clock time and date at job start Mon Mar 30 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50693 * 109.57870 * 2 1 4 4 O 1.21276 * 120.00017 * 245.85058 * 3 2 1 5 5 N 1.34777 * 120.00028 * 65.84664 * 3 2 1 6 6 C 1.46501 * 120.00432 * 185.07838 * 5 3 2 7 7 C 1.52996 * 109.47608 * 175.21851 * 6 5 3 8 8 C 1.50698 * 115.55046 * 282.53708 * 7 6 5 9 9 H 1.08002 * 119.99606 * 143.67459 * 8 7 6 10 10 C 1.37875 * 120.00051 * 323.68181 * 8 7 6 11 11 N 1.31514 * 119.99655 * 340.74826 * 10 8 7 12 12 Si 1.86797 * 119.99893 * 160.75682 * 10 8 7 13 13 H 1.48495 * 109.47314 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47508 * 119.99795 * 12 10 8 15 15 H 1.48505 * 109.47056 * 239.99414 * 12 10 8 16 16 C 1.52999 * 117.49618 * 136.82694 * 7 6 5 17 17 C 1.53000 * 60.00068 * 252.51273 * 16 7 6 18 18 C 1.53116 * 109.52012 * 239.83612 * 2 1 3 19 19 C 1.53042 * 109.27695 * 182.44444 * 18 2 1 20 20 N 1.46842 * 109.52277 * 59.17936 * 19 18 2 21 21 C 1.46844 * 111.20228 * 298.25856 * 20 19 18 22 22 C 1.53041 * 109.52131 * 61.74030 * 21 20 19 23 23 H 1.08997 * 109.47409 * 184.40822 * 1 2 3 24 24 H 1.09002 * 109.46984 * 304.40164 * 1 2 3 25 25 H 1.08997 * 109.46754 * 64.40149 * 1 2 3 26 26 H 0.97007 * 120.00083 * 5.07899 * 5 3 2 27 27 H 1.09005 * 109.46624 * 295.22319 * 6 5 3 28 28 H 1.09000 * 109.47074 * 55.21615 * 6 5 3 29 29 H 0.97001 * 119.99720 * 185.01960 * 11 10 8 30 30 H 1.08993 * 117.50034 * 0.02562 * 16 7 6 31 31 H 1.09005 * 117.49656 * 145.02285 * 16 7 6 32 32 H 1.08998 * 117.49792 * 252.51095 * 17 16 7 33 33 H 1.09001 * 117.51747 * 107.48571 * 17 16 7 34 34 H 1.08999 * 109.50226 * 62.50892 * 18 2 1 35 35 H 1.08995 * 109.50957 * 302.38458 * 18 2 1 36 36 H 1.09009 * 109.46216 * 299.16601 * 19 18 2 37 37 H 1.08996 * 109.46311 * 179.20296 * 19 18 2 38 38 H 1.00903 * 110.99904 * 62.36278 * 20 19 18 39 39 H 1.08997 * 109.46529 * 181.75645 * 21 20 19 40 40 H 1.08998 * 109.46261 * 301.72718 * 21 20 19 41 41 H 1.08998 * 109.50163 * 180.87681 * 22 21 20 42 42 H 1.09002 * 109.49954 * 60.76118 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0350 1.4198 0.0000 4 8 2.6431 1.8471 -0.9584 5 7 1.8109 2.2148 1.0650 6 6 2.2028 3.6257 1.0214 7 6 1.7330 4.3253 2.2984 8 6 0.2669 4.6702 2.3488 9 1 -0.2723 4.6009 3.2821 10 6 -0.3861 5.0741 1.2037 11 7 0.3032 5.5217 0.1769 12 14 -2.2496 4.9858 1.1107 13 1 -2.7842 4.4501 2.3883 14 1 -2.7986 6.3454 0.8753 15 1 -2.6477 4.0912 -0.0059 16 6 2.7096 5.2884 2.9763 17 6 2.4111 3.9288 3.6114 18 6 2.0417 -0.7251 -1.2477 19 6 3.5708 -0.7754 -1.2115 20 7 4.0102 -1.4790 0.0001 21 6 3.5708 -0.7753 1.2117 22 6 2.0416 -0.7250 1.2479 23 1 -0.3634 -1.0246 0.0790 24 1 -0.3633 0.5806 0.8479 25 1 -0.3633 0.4440 -0.9268 26 1 1.3900 1.8527 1.8605 27 1 3.2877 3.6992 0.9448 28 1 1.7443 4.1036 0.1557 29 1 -0.1581 5.8737 -0.6004 30 1 3.6865 5.4239 2.5124 31 1 2.2917 6.1720 3.4589 32 1 1.7969 3.9179 4.5118 33 1 3.1916 3.1693 3.5655 34 1 1.7162 -0.1891 -2.1393 35 1 1.6446 -1.7400 -1.2674 36 1 3.9675 0.2399 -1.2059 37 1 3.9378 -1.3035 -2.0916 38 1 3.6875 -2.4351 0.0001 39 1 3.9377 -1.3035 2.0918 40 1 3.9675 0.2399 1.2060 41 1 1.7161 -0.1890 2.1394 42 1 1.6446 -1.7400 1.2675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404155690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:39 Heat of formation + Delta-G solvation = -25.000134 kcal Electronic energy + Delta-G solvation = -21799.311129 eV Core-core repulsion = 18779.242024 eV Total energy + Delta-G solvation = -3020.069105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37775 -37.53160 -36.46400 -33.72300 -32.84477 -32.28344 -30.65115 -27.10297 -26.31346 -25.34598 -22.92361 -22.58734 -21.51328 -21.13556 -19.33021 -18.72149 -16.90189 -16.05445 -15.47921 -14.93528 -14.83803 -14.48829 -14.42036 -14.16497 -13.90111 -13.68190 -13.26309 -12.81077 -12.34588 -12.26149 -11.89657 -11.75970 -11.67577 -11.63066 -11.30844 -11.07901 -11.02347 -10.87264 -10.74301 -10.53316 -10.34216 -10.19756 -9.58124 -9.29608 -8.93967 -8.83203 -8.31704 -8.25704 -7.90091 -6.16322 -4.16851 3.18405 3.29104 3.30831 3.31649 3.93176 4.27949 4.37168 4.69818 4.76976 4.90825 5.00419 5.19148 5.34811 5.41446 5.48073 5.53796 5.65464 5.75114 5.82483 5.88103 5.90868 5.98232 6.06392 6.14784 6.22077 6.28481 6.31957 6.43035 6.51197 6.58201 6.64152 6.91110 7.03559 7.08145 7.25620 7.44046 7.48138 7.56091 7.94313 8.30294 8.40352 8.77791 9.00783 9.41088 10.85069 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.006835 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.583626 B = 4095.732740 C = 4692.063290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C 0.517 3.483 4 O -0.552 6.552 5 N -0.701 5.701 6 C 0.143 3.857 7 C 0.040 3.960 8 C -0.498 4.498 9 H 0.063 0.937 10 C 0.076 3.924 11 N -0.865 5.865 12 Si 0.886 3.114 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.281 1.281 16 C -0.193 4.193 17 C -0.211 4.211 18 C -0.128 4.128 19 C 0.047 3.953 20 N -0.685 5.685 21 C 0.054 3.946 22 C -0.145 4.145 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.393 0.607 27 H 0.029 0.971 28 H 0.121 0.879 29 H 0.265 0.735 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.333 0.667 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -13.050 0.923 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C 0.302 3.698 4 O -0.431 6.431 5 N -0.349 5.349 6 C 0.021 3.979 7 C 0.039 3.961 8 C -0.535 4.535 9 H 0.081 0.919 10 C -0.128 4.128 11 N -0.501 5.501 12 Si 0.713 3.287 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.207 1.207 16 C -0.232 4.232 17 C -0.248 4.248 18 C -0.168 4.168 19 C -0.082 4.082 20 N -0.312 5.312 21 C -0.076 4.076 22 C -0.185 4.185 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.227 0.773 27 H 0.047 0.953 28 H 0.139 0.861 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.842 -12.385 0.015 12.707 hybrid contribution -2.269 -0.224 0.422 2.319 sum 0.573 -12.610 0.437 12.630 Atomic orbital electron populations 1.21824 0.92639 1.02002 1.03218 1.20846 0.96987 0.93601 0.96989 1.20155 0.79825 0.86866 0.82981 1.90603 1.41744 1.75795 1.34932 1.46022 1.60842 1.11628 1.16425 1.21304 0.96215 0.78115 1.02288 1.19163 0.93214 0.96319 0.87380 1.20479 0.91534 1.46610 0.94875 0.91910 1.24956 0.98289 0.94086 0.95509 1.69824 1.35389 1.37631 1.07234 0.86638 0.85785 0.78002 0.78276 1.19562 1.20958 1.20717 1.22929 1.00475 0.92985 1.06798 1.22882 1.04086 0.98549 0.99328 1.22048 0.98096 0.99229 0.97387 1.22238 0.92696 1.01382 0.91896 1.60670 1.62944 1.05422 1.02189 1.22048 0.92322 1.00290 0.92915 1.22348 0.98204 1.00712 0.97200 0.92107 0.91526 0.92065 0.77335 0.95318 0.86110 0.92500 0.91573 0.90173 0.90570 0.91384 0.90650 0.92094 0.88525 0.91226 0.85029 0.90674 0.90658 0.90779 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.46 37.16 0.31 -1.61 16 2 C -0.08 -1.18 0.66 -155.54 -0.10 -1.28 16 3 C 0.52 9.90 4.99 -10.99 -0.05 9.85 16 4 O -0.55 -12.50 14.05 5.56 0.08 -12.42 16 5 N -0.70 -13.93 5.37 -60.30 -0.32 -14.25 16 6 C 0.14 3.35 5.30 -4.04 -0.02 3.33 16 7 C 0.04 0.94 1.72 -155.66 -0.27 0.67 16 8 C -0.50 -12.78 8.99 -34.44 -0.31 -13.09 16 9 H 0.06 1.61 7.89 -52.49 -0.41 1.20 16 10 C 0.08 1.99 5.10 -17.82 -0.09 1.90 16 11 N -0.87 -23.69 11.00 55.43 0.61 -23.08 16 12 Si 0.89 20.21 29.58 -169.99 -5.03 15.18 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.19 -4.28 9.88 -26.73 -0.26 -4.54 16 17 C -0.21 -4.28 9.95 -26.73 -0.27 -4.55 16 18 C -0.13 -1.74 4.50 -26.65 -0.12 -1.86 16 19 C 0.05 0.66 6.28 -3.83 -0.02 0.63 16 20 N -0.68 -8.55 6.87 -113.82 -0.78 -9.33 16 21 C 0.05 0.69 6.35 -3.83 -0.02 0.66 16 22 C -0.15 -1.75 4.75 -26.65 -0.13 -1.87 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.39 7.13 7.37 -40.82 -0.30 6.83 16 27 H 0.03 0.68 7.98 -51.93 -0.41 0.26 16 28 H 0.12 3.29 5.38 -51.93 -0.28 3.01 16 29 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 30 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 31 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.13 7.97 -51.93 -0.41 0.72 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.69 5.94 -51.92 -0.31 1.38 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.33 3.42 8.86 -39.29 -0.35 3.07 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.16 7.31 -51.93 -0.38 0.79 16 41 H 0.07 0.88 7.11 -51.93 -0.37 0.51 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -28.32 328.67 -8.86 -37.17 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.01 Total: 13.53 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.36 Total: -11.76 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.50 Total: -46.66 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.32 -8.86 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404155690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.174 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds