Wall clock time and date at job start Mon Mar 30 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50693 * 109.57870 * 2 1 4 4 O 1.21276 * 120.00017 * 245.85058 * 3 2 1 5 5 N 1.34777 * 120.00028 * 65.84664 * 3 2 1 6 6 C 1.46501 * 120.00432 * 185.07838 * 5 3 2 7 7 C 1.52996 * 109.47608 * 175.21851 * 6 5 3 8 8 C 1.50698 * 115.55046 * 282.53708 * 7 6 5 9 9 H 1.08002 * 119.99606 * 143.67459 * 8 7 6 10 10 C 1.37875 * 120.00051 * 323.68181 * 8 7 6 11 11 N 1.31514 * 119.99655 * 340.74826 * 10 8 7 12 12 Si 1.86797 * 119.99893 * 160.75682 * 10 8 7 13 13 H 1.48495 * 109.47314 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47508 * 119.99795 * 12 10 8 15 15 H 1.48505 * 109.47056 * 239.99414 * 12 10 8 16 16 C 1.52999 * 117.49618 * 136.82694 * 7 6 5 17 17 C 1.53000 * 60.00068 * 252.51273 * 16 7 6 18 18 C 1.53116 * 109.52012 * 239.83612 * 2 1 3 19 19 C 1.53042 * 109.27695 * 182.44444 * 18 2 1 20 20 N 1.46842 * 109.52277 * 59.17936 * 19 18 2 21 21 C 1.46844 * 111.20228 * 298.25856 * 20 19 18 22 22 C 1.53041 * 109.52131 * 61.74030 * 21 20 19 23 23 H 1.08997 * 109.47409 * 184.40822 * 1 2 3 24 24 H 1.09002 * 109.46984 * 304.40164 * 1 2 3 25 25 H 1.08997 * 109.46754 * 64.40149 * 1 2 3 26 26 H 0.97007 * 120.00083 * 5.07899 * 5 3 2 27 27 H 1.09005 * 109.46624 * 295.22319 * 6 5 3 28 28 H 1.09000 * 109.47074 * 55.21615 * 6 5 3 29 29 H 0.97001 * 119.99720 * 185.01960 * 11 10 8 30 30 H 1.08993 * 117.50034 * 0.02562 * 16 7 6 31 31 H 1.09005 * 117.49656 * 145.02285 * 16 7 6 32 32 H 1.08998 * 117.49792 * 252.51095 * 17 16 7 33 33 H 1.09001 * 117.51747 * 107.48571 * 17 16 7 34 34 H 1.08999 * 109.50226 * 62.50892 * 18 2 1 35 35 H 1.08995 * 109.50957 * 302.38458 * 18 2 1 36 36 H 1.09009 * 109.46216 * 299.16601 * 19 18 2 37 37 H 1.08996 * 109.46311 * 179.20296 * 19 18 2 38 38 H 1.00903 * 110.99904 * 62.36278 * 20 19 18 39 39 H 1.08997 * 109.46529 * 181.75645 * 21 20 19 40 40 H 1.08998 * 109.46261 * 301.72718 * 21 20 19 41 41 H 1.08998 * 109.50163 * 180.87681 * 22 21 20 42 42 H 1.09002 * 109.49954 * 60.76118 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0350 1.4198 0.0000 4 8 2.6431 1.8471 -0.9584 5 7 1.8109 2.2148 1.0650 6 6 2.2028 3.6257 1.0214 7 6 1.7330 4.3253 2.2984 8 6 0.2669 4.6702 2.3488 9 1 -0.2723 4.6009 3.2821 10 6 -0.3861 5.0741 1.2037 11 7 0.3032 5.5217 0.1769 12 14 -2.2496 4.9858 1.1107 13 1 -2.7842 4.4501 2.3883 14 1 -2.7986 6.3454 0.8753 15 1 -2.6477 4.0912 -0.0059 16 6 2.7096 5.2884 2.9763 17 6 2.4111 3.9288 3.6114 18 6 2.0417 -0.7251 -1.2477 19 6 3.5708 -0.7754 -1.2115 20 7 4.0102 -1.4790 0.0001 21 6 3.5708 -0.7753 1.2117 22 6 2.0416 -0.7250 1.2479 23 1 -0.3634 -1.0246 0.0790 24 1 -0.3633 0.5806 0.8479 25 1 -0.3633 0.4440 -0.9268 26 1 1.3900 1.8527 1.8605 27 1 3.2877 3.6992 0.9448 28 1 1.7443 4.1036 0.1557 29 1 -0.1581 5.8737 -0.6004 30 1 3.6865 5.4239 2.5124 31 1 2.2917 6.1720 3.4589 32 1 1.7969 3.9179 4.5118 33 1 3.1916 3.1693 3.5655 34 1 1.7162 -0.1891 -2.1393 35 1 1.6446 -1.7400 -1.2674 36 1 3.9675 0.2399 -1.2059 37 1 3.9378 -1.3035 -2.0916 38 1 3.6875 -2.4351 0.0001 39 1 3.9377 -1.3035 2.0918 40 1 3.9675 0.2399 1.2060 41 1 1.7161 -0.1890 2.1394 42 1 1.6446 -1.7400 1.2675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404155690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:39 Heat of formation + Delta-G solvation = -44.375722 kcal Electronic energy + Delta-G solvation = -21800.151317 eV Core-core repulsion = 18779.242024 eV Total energy + Delta-G solvation = -3020.909293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.70809 -39.06153 -38.06384 -35.16253 -34.26703 -34.18348 -31.72204 -28.18907 -28.08519 -27.24750 -24.03880 -23.81202 -23.01855 -22.55242 -21.15716 -20.24416 -18.44559 -17.61956 -16.94870 -16.72188 -16.35776 -15.78329 -15.60633 -15.55418 -15.28077 -15.02625 -14.70231 -14.40810 -13.71662 -13.62722 -13.30486 -13.22604 -13.16868 -12.89327 -12.77724 -12.70530 -12.42550 -12.31122 -12.12398 -12.08615 -11.97849 -11.39627 -11.26220 -11.19121 -10.66616 -10.53893 -10.06537 -9.69298 -9.30203 -8.14310 -6.20022 1.36079 1.41940 1.51443 1.80357 2.37404 2.43381 2.96486 3.39810 3.55530 3.62170 3.70865 3.90188 4.11147 4.16363 4.23956 4.42697 4.47320 4.51078 4.62996 4.65225 4.69460 4.76730 4.82081 4.85267 4.92724 4.94121 4.99225 5.08288 5.11382 5.16403 5.22633 5.25105 5.33762 5.52004 5.56322 5.77543 5.96470 6.04762 6.35410 6.62130 6.74857 6.87541 7.40139 7.47428 8.85984 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.006835 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.583626 B = 4095.732740 C = 4692.063290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C 0.510 3.490 4 O -0.594 6.594 5 N -0.697 5.697 6 C 0.157 3.843 7 C 0.012 3.988 8 C -0.505 4.505 9 H 0.062 0.938 10 C 0.032 3.968 11 N -0.897 5.897 12 Si 0.943 3.057 13 H -0.259 1.259 14 H -0.285 1.285 15 H -0.285 1.285 16 C -0.202 4.202 17 C -0.176 4.176 18 C -0.124 4.124 19 C 0.052 3.948 20 N -0.685 5.685 21 C 0.055 3.945 22 C -0.138 4.138 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.403 0.597 27 H 0.015 0.985 28 H 0.082 0.918 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.352 0.648 39 H 0.100 0.900 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -15.952 2.508 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C 0.297 3.703 4 O -0.476 6.476 5 N -0.346 5.346 6 C 0.033 3.967 7 C 0.011 3.989 8 C -0.542 4.542 9 H 0.080 0.920 10 C -0.170 4.170 11 N -0.535 5.535 12 Si 0.769 3.231 13 H -0.182 1.182 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.241 4.241 17 C -0.213 4.213 18 C -0.164 4.164 19 C -0.078 4.078 20 N -0.314 5.314 21 C -0.075 4.075 22 C -0.177 4.177 23 H 0.117 0.883 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.238 0.762 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.171 0.829 39 H 0.118 0.882 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.919 -15.316 1.636 15.523 hybrid contribution -1.907 0.703 -0.074 2.034 sum 0.012 -14.614 1.562 14.697 Atomic orbital electron populations 1.21845 0.91679 1.04102 1.01858 1.20901 0.97550 0.90294 0.99132 1.21145 0.78640 0.88725 0.81772 1.90586 1.43478 1.77115 1.36381 1.45894 1.60997 1.10340 1.17322 1.20831 0.94827 0.80024 1.01023 1.19177 0.92743 0.98076 0.88867 1.20717 0.92725 1.45975 0.94738 0.91990 1.25622 1.02007 0.94009 0.95322 1.69980 1.36740 1.38996 1.07746 0.85733 0.81275 0.77655 0.78427 1.18233 1.21121 1.21065 1.22935 1.00239 0.93758 1.07120 1.22874 1.03306 0.97382 0.97721 1.22054 0.97791 1.00652 0.95873 1.22063 0.92945 0.99441 0.93356 1.60584 1.63168 1.06280 1.01390 1.22027 0.92837 0.98737 0.93880 1.22358 0.97537 1.02222 0.95582 0.88263 0.92347 0.93982 0.76172 0.96697 0.89995 0.92975 0.91192 0.90768 0.89331 0.89397 0.92923 0.88389 0.92906 0.89712 0.82866 0.88160 0.94344 0.90385 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.46 71.98 0.61 -2.87 16 2 C -0.08 -2.07 0.66 -52.85 -0.03 -2.11 16 3 C 0.51 19.91 4.99 87.65 0.44 20.35 16 4 O -0.59 -28.36 14.05 -3.02 -0.04 -28.40 16 5 N -0.70 -28.02 5.37 -463.07 -2.49 -30.51 16 6 C 0.16 7.60 5.30 86.38 0.46 8.05 16 7 C 0.01 0.57 1.72 -52.93 -0.09 0.48 16 8 C -0.50 -25.88 8.99 25.60 0.23 -25.65 16 9 H 0.06 3.13 7.89 -2.91 -0.02 3.10 16 10 C 0.03 1.67 5.10 84.65 0.43 2.10 16 11 N -0.90 -50.82 11.00 21.45 0.24 -50.59 16 12 Si 0.94 41.71 29.58 68.60 2.03 43.74 16 13 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 C -0.20 -8.90 9.88 30.59 0.30 -8.60 16 17 C -0.18 -6.83 9.95 30.59 0.30 -6.52 16 18 C -0.12 -3.16 4.50 30.65 0.14 -3.02 16 19 C 0.05 1.39 6.28 86.33 0.54 1.94 16 20 N -0.68 -15.44 6.87 -514.01 -3.53 -18.97 16 21 C 0.06 1.26 6.35 86.33 0.55 1.81 16 22 C -0.14 -2.84 4.75 30.65 0.15 -2.70 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 1.57 8.06 -2.39 -0.02 1.55 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.40 14.32 7.37 -92.70 -0.68 13.64 16 27 H 0.01 0.74 7.98 -2.38 -0.02 0.72 16 28 H 0.08 4.70 5.38 -2.39 -0.01 4.69 16 29 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 30 H 0.07 2.98 8.10 -2.39 -0.02 2.96 16 31 H 0.07 3.32 8.14 -2.38 -0.02 3.30 16 32 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.05 1.58 7.97 -2.39 -0.02 1.56 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.92 5.94 -2.38 -0.01 1.91 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.35 5.79 8.86 -89.69 -0.79 5.00 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.17 7.31 -2.39 -0.02 1.15 16 41 H 0.08 1.58 7.11 -2.39 -0.02 1.57 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.23 328.67 -0.24 -64.47 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.46 Total: 36.99 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 4.02 Total: -16.73 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -5.78 Total: -100.06 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.04 Total: -28.40 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -64.23 -0.24 -64.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404155690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.091 kcal (2) G-P(sol) polarization free energy of solvation -64.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds