Wall clock time and date at job start Mon Mar 30 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99897 * 2 1 4 4 H 1.48498 * 109.46918 * 4.97862 * 3 2 1 5 5 H 1.48498 * 109.47195 * 124.98145 * 3 2 1 6 6 H 1.48501 * 109.46641 * 244.98008 * 3 2 1 7 7 C 1.37869 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00107 * 172.35673 * 7 2 1 9 9 C 1.50704 * 120.00386 * 352.35789 * 7 2 1 10 10 C 1.53003 * 115.54962 * 85.30774 * 9 7 2 11 11 N 1.46902 * 109.46998 * 54.11369 * 10 9 7 12 12 C 1.46761 * 110.99987 * 51.71710 * 11 10 9 13 13 C 1.53179 * 109.89912 * 185.23794 * 12 11 10 14 14 C 1.52895 * 108.88174 * 301.26508 * 13 12 11 15 15 H 1.09006 * 109.46110 * 298.85524 * 14 13 12 16 16 O 1.42778 * 110.68417 * 178.15281 * 14 13 12 17 17 C 1.43189 * 113.19403 * 180.65103 * 16 14 13 18 18 C 1.53012 * 109.66290 * 58.23182 * 17 16 14 19 19 N 1.47157 * 109.66599 * 304.14251 * 18 17 16 20 20 C 1.46787 * 110.28415 * 58.10036 * 19 18 17 21 21 H 1.09006 * 109.36432 * 60.02756 * 20 19 18 22 22 C 1.46994 * 111.00309 * 176.46089 * 11 10 9 23 23 C 1.52993 * 117.49899 * 299.64294 * 9 7 2 24 24 C 1.52996 * 117.50212 * 230.97875 * 9 7 2 25 25 H 0.96999 * 120.00129 * 178.23744 * 1 2 3 26 26 H 1.08995 * 109.47361 * 174.11423 * 10 9 7 27 27 H 1.09002 * 109.47319 * 294.11481 * 10 9 7 28 28 H 1.08998 * 109.40103 * 305.36740 * 12 11 10 29 29 H 1.08999 * 109.40009 * 65.10687 * 12 11 10 30 30 H 1.09000 * 109.56858 * 181.45121 * 13 12 11 31 31 H 1.08997 * 109.67266 * 61.14556 * 13 12 11 32 32 H 1.08997 * 109.43699 * 178.29188 * 17 16 14 33 33 H 1.08991 * 109.43757 * 298.17209 * 17 16 14 34 34 H 1.09001 * 109.43805 * 64.20340 * 18 17 16 35 35 H 1.09007 * 109.43452 * 184.12225 * 18 17 16 36 36 H 1.00901 * 111.00089 * 294.66175 * 19 18 17 37 37 H 1.09003 * 109.52627 * 294.21496 * 22 11 10 38 38 H 1.09007 * 109.52998 * 54.35706 * 22 11 10 39 39 H 1.08998 * 117.49855 * 359.97438 * 23 9 7 40 40 H 1.09002 * 117.50483 * 145.01670 * 23 9 7 41 41 H 1.09000 * 117.50033 * 214.97925 * 24 9 7 42 42 H 1.09001 * 117.49801 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2887 2.7438 0.1215 5 1 3.1918 1.6452 1.1471 6 1 3.0094 1.7503 -1.2687 7 6 2.0045 -1.1940 0.0005 8 1 3.0774 -1.1982 -0.1239 9 6 1.2611 -2.4933 0.1747 10 6 0.6798 -3.0976 -1.1051 11 7 1.7438 -3.2362 -2.1084 12 6 2.9019 -3.9457 -1.5522 13 6 4.0433 -3.9620 -2.5737 14 6 3.5551 -4.6476 -3.8502 15 1 3.2704 -5.6753 -3.6244 16 8 4.5780 -4.6460 -4.8463 17 6 4.1718 -5.2635 -6.0727 18 6 2.9401 -4.5452 -6.6276 19 7 1.8717 -4.5404 -5.6156 20 6 2.3377 -3.8867 -4.3867 21 1 2.6220 -2.8583 -4.6099 22 6 1.2399 -3.8918 -3.3237 23 6 0.4697 -2.6863 1.4697 24 6 1.7707 -3.4609 1.2446 25 1 -0.4850 -0.8396 -0.0258 26 1 0.2580 -4.0782 -0.8849 27 1 -0.1022 -2.4446 -1.4927 28 1 3.2348 -3.4406 -0.6455 29 1 2.6174 -4.9699 -1.3108 30 1 4.8909 -4.5122 -2.1652 31 1 4.3467 -2.9402 -2.8012 32 1 4.9845 -5.2018 -6.7964 33 1 3.9293 -6.3101 -5.8888 34 1 3.2030 -3.5185 -6.8824 35 1 2.5904 -5.0625 -7.5211 36 1 1.5487 -5.4774 -5.4265 37 1 0.9600 -4.9199 -3.0938 38 1 0.3691 -3.3513 -3.6949 39 1 0.4871 -1.8737 2.1960 40 1 -0.4648 -3.2441 1.4102 41 1 1.6915 -4.5280 1.0370 42 1 2.6440 -3.1580 1.8223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404214701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:32 Heat of formation + Delta-G solvation = -12.472311 kcal Electronic energy + Delta-G solvation = -21686.617694 eV Core-core repulsion = 18667.091837 eV Total energy + Delta-G solvation = -3019.525858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23233 -38.00198 -35.93726 -34.64247 -32.01079 -31.72015 -30.20188 -27.16030 -25.58227 -24.78684 -23.23003 -22.53415 -21.36772 -21.17645 -19.91644 -19.14563 -16.72236 -16.48451 -16.00816 -15.58120 -15.28380 -14.77744 -14.38207 -13.90255 -13.68804 -13.62210 -13.42824 -12.98124 -12.75190 -12.46070 -12.24201 -11.88027 -11.48465 -11.33840 -10.99331 -10.95267 -10.76258 -10.64813 -10.55989 -10.47551 -10.38073 -10.10899 -10.02809 -9.41717 -8.43519 -8.39422 -8.25972 -8.19977 -7.52538 -6.22026 -3.91880 3.51619 3.53500 3.67113 3.70890 3.90575 4.56549 4.62318 4.65894 4.86464 4.93624 5.07075 5.12623 5.16063 5.22899 5.40880 5.45295 5.48295 5.54557 5.72879 5.76452 5.86825 5.91926 6.00763 6.09632 6.16481 6.22197 6.30934 6.37779 6.46655 6.54850 6.56377 6.76842 6.83323 6.90561 7.12965 7.20664 7.26694 7.28997 7.78175 7.87867 8.37898 8.54918 8.99920 9.79423 11.17432 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.005807 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.460289 B = 4820.256489 C = 5191.355993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.028 3.972 3 Si 1.063 2.937 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.029 3.971 10 C 0.102 3.898 11 N -0.510 5.510 12 C 0.064 3.936 13 C -0.104 4.104 14 C 0.058 3.942 15 H 0.048 0.952 16 O -0.376 6.376 17 C 0.022 3.978 18 C 0.023 3.977 19 N -0.677 5.677 20 C 0.063 3.937 21 H 0.101 0.899 22 C 0.068 3.932 23 C -0.178 4.178 24 C -0.203 4.203 25 H 0.271 0.729 26 H 0.000 1.000 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.014 0.986 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.335 0.665 37 H 0.020 0.980 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.085 -11.147 -9.163 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.892 3.108 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.028 3.972 10 C -0.025 4.025 11 N -0.234 5.234 12 C -0.064 4.064 13 C -0.142 4.142 14 C -0.001 4.001 15 H 0.066 0.934 16 O -0.295 6.295 17 C -0.057 4.057 18 C -0.107 4.107 19 N -0.305 5.305 20 C -0.048 4.048 21 H 0.119 0.881 22 C -0.061 4.061 23 C -0.217 4.217 24 C -0.240 4.240 25 H 0.082 0.918 26 H 0.018 0.982 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.152 0.848 37 H 0.038 0.962 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.882 -8.357 -9.505 13.566 hybrid contribution 0.261 -3.492 0.426 3.527 sum 5.143 -11.849 -9.079 15.789 Atomic orbital electron populations 1.70746 1.06856 1.30843 1.46004 1.25624 0.96494 1.02016 0.93586 0.83626 0.74943 0.75760 0.76425 1.21083 1.21749 1.21481 1.21042 0.94007 0.89325 1.54061 0.93047 1.19124 0.97729 0.95328 0.85006 1.21736 0.92274 0.95881 0.92627 1.61501 1.07406 1.49516 1.04941 1.22088 0.90614 0.95444 0.98204 1.21544 0.98283 1.01891 0.92513 1.22863 0.89475 0.98244 0.89561 0.93443 1.88080 1.38172 1.80490 1.22739 1.23246 0.99107 0.95764 0.87556 1.22652 0.90272 1.02398 0.95370 1.60919 1.35508 1.23888 1.10218 1.22167 0.93613 0.99859 0.89134 0.88060 1.21914 0.96812 0.96531 0.90854 1.22780 0.92907 1.02010 1.03956 1.22980 0.98019 0.95308 1.07717 0.91765 0.98159 0.91037 0.87742 0.96738 0.91385 0.89869 0.88582 0.93645 0.89764 0.89792 0.84756 0.96225 0.89936 0.89697 0.91830 0.91976 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.55 13.50 55.43 0.75 -25.80 16 2 C 0.03 0.77 5.38 -17.82 -0.10 0.67 16 3 Si 1.06 25.15 29.91 -169.99 -5.08 20.07 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.55 -14.58 8.01 -34.44 -0.28 -14.86 16 8 H 0.05 1.40 7.66 -52.48 -0.40 1.00 16 9 C 0.03 0.68 0.16 -155.66 -0.02 0.65 16 10 C 0.10 2.22 4.97 -3.82 -0.02 2.20 16 11 N -0.51 -10.06 4.43 -234.67 -1.04 -11.10 16 12 C 0.06 1.16 4.71 -3.81 -0.02 1.15 16 13 C -0.10 -1.68 5.82 -26.69 -0.16 -1.83 16 14 C 0.06 0.86 2.64 -26.65 -0.07 0.79 16 15 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 16 O -0.38 -5.50 10.55 -35.23 -0.37 -5.87 16 17 C 0.02 0.24 6.99 37.16 0.26 0.50 16 18 C 0.02 0.24 6.74 -3.68 -0.02 0.22 16 19 N -0.68 -8.54 6.65 -106.56 -0.71 -9.25 16 20 C 0.06 0.95 2.56 -67.74 -0.17 0.78 16 21 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 22 C 0.07 1.13 5.10 -3.87 -0.02 1.11 16 23 C -0.18 -4.04 8.88 -26.70 -0.24 -4.28 16 24 C -0.20 -4.26 8.18 -26.69 -0.22 -4.48 16 25 H 0.27 7.84 6.11 -40.82 -0.25 7.59 16 26 H 0.00 0.01 8.08 -51.93 -0.42 -0.41 16 27 H 0.07 1.70 7.54 -51.93 -0.39 1.31 16 28 H 0.10 2.11 5.17 -51.93 -0.27 1.84 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.34 3.75 8.82 -39.29 -0.35 3.41 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 1.44 8.13 -51.93 -0.42 1.01 16 39 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -28.90 322.00 -9.89 -38.79 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.21 Total: 5.69 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.07 Total: -17.38 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -1.00 Total: -46.15 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.37 Total: -5.87 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.90 -9.89 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404214701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.320 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds