Wall clock time and date at job start Mon Mar 30 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99897 * 2 1 4 4 H 1.48498 * 109.46918 * 4.97862 * 3 2 1 5 5 H 1.48498 * 109.47195 * 124.98145 * 3 2 1 6 6 H 1.48501 * 109.46641 * 244.98008 * 3 2 1 7 7 C 1.37869 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00107 * 172.35673 * 7 2 1 9 9 C 1.50704 * 120.00386 * 352.35789 * 7 2 1 10 10 C 1.53003 * 115.54962 * 85.30774 * 9 7 2 11 11 N 1.46902 * 109.46998 * 54.11369 * 10 9 7 12 12 C 1.46761 * 110.99987 * 51.71710 * 11 10 9 13 13 C 1.53179 * 109.89912 * 185.23794 * 12 11 10 14 14 C 1.52895 * 108.88174 * 301.26508 * 13 12 11 15 15 H 1.09006 * 109.46110 * 298.85524 * 14 13 12 16 16 O 1.42778 * 110.68417 * 178.15281 * 14 13 12 17 17 C 1.43189 * 113.19403 * 180.65103 * 16 14 13 18 18 C 1.53012 * 109.66290 * 58.23182 * 17 16 14 19 19 N 1.47157 * 109.66599 * 304.14251 * 18 17 16 20 20 C 1.46787 * 110.28415 * 58.10036 * 19 18 17 21 21 H 1.09006 * 109.36432 * 60.02756 * 20 19 18 22 22 C 1.46994 * 111.00309 * 176.46089 * 11 10 9 23 23 C 1.52993 * 117.49899 * 299.64294 * 9 7 2 24 24 C 1.52996 * 117.50212 * 230.97875 * 9 7 2 25 25 H 0.96999 * 120.00129 * 178.23744 * 1 2 3 26 26 H 1.08995 * 109.47361 * 174.11423 * 10 9 7 27 27 H 1.09002 * 109.47319 * 294.11481 * 10 9 7 28 28 H 1.08998 * 109.40103 * 305.36740 * 12 11 10 29 29 H 1.08999 * 109.40009 * 65.10687 * 12 11 10 30 30 H 1.09000 * 109.56858 * 181.45121 * 13 12 11 31 31 H 1.08997 * 109.67266 * 61.14556 * 13 12 11 32 32 H 1.08997 * 109.43699 * 178.29188 * 17 16 14 33 33 H 1.08991 * 109.43757 * 298.17209 * 17 16 14 34 34 H 1.09001 * 109.43805 * 64.20340 * 18 17 16 35 35 H 1.09007 * 109.43452 * 184.12225 * 18 17 16 36 36 H 1.00901 * 111.00089 * 294.66175 * 19 18 17 37 37 H 1.09003 * 109.52627 * 294.21496 * 22 11 10 38 38 H 1.09007 * 109.52998 * 54.35706 * 22 11 10 39 39 H 1.08998 * 117.49855 * 359.97438 * 23 9 7 40 40 H 1.09002 * 117.50483 * 145.01670 * 23 9 7 41 41 H 1.09000 * 117.50033 * 214.97925 * 24 9 7 42 42 H 1.09001 * 117.49801 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2887 2.7438 0.1215 5 1 3.1918 1.6452 1.1471 6 1 3.0094 1.7503 -1.2687 7 6 2.0045 -1.1940 0.0005 8 1 3.0774 -1.1982 -0.1239 9 6 1.2611 -2.4933 0.1747 10 6 0.6798 -3.0976 -1.1051 11 7 1.7438 -3.2362 -2.1084 12 6 2.9019 -3.9457 -1.5522 13 6 4.0433 -3.9620 -2.5737 14 6 3.5551 -4.6476 -3.8502 15 1 3.2704 -5.6753 -3.6244 16 8 4.5780 -4.6460 -4.8463 17 6 4.1718 -5.2635 -6.0727 18 6 2.9401 -4.5452 -6.6276 19 7 1.8717 -4.5404 -5.6156 20 6 2.3377 -3.8867 -4.3867 21 1 2.6220 -2.8583 -4.6099 22 6 1.2399 -3.8918 -3.3237 23 6 0.4697 -2.6863 1.4697 24 6 1.7707 -3.4609 1.2446 25 1 -0.4850 -0.8396 -0.0258 26 1 0.2580 -4.0782 -0.8849 27 1 -0.1022 -2.4446 -1.4927 28 1 3.2348 -3.4406 -0.6455 29 1 2.6174 -4.9699 -1.3108 30 1 4.8909 -4.5122 -2.1652 31 1 4.3467 -2.9402 -2.8012 32 1 4.9845 -5.2018 -6.7964 33 1 3.9293 -6.3101 -5.8888 34 1 3.2030 -3.5185 -6.8824 35 1 2.5904 -5.0625 -7.5211 36 1 1.5487 -5.4774 -5.4265 37 1 0.9600 -4.9199 -3.0938 38 1 0.3691 -3.3513 -3.6949 39 1 0.4871 -1.8737 2.1960 40 1 -0.4648 -3.2441 1.4102 41 1 1.6915 -4.5280 1.0370 42 1 2.6440 -3.1580 1.8223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404214701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:32 Heat of formation + Delta-G solvation = -32.894394 kcal Electronic energy + Delta-G solvation = -21687.503262 eV Core-core repulsion = 18667.091837 eV Total energy + Delta-G solvation = -3020.411426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40569 -39.54588 -37.46304 -35.71552 -33.86549 -33.27296 -31.40336 -28.45185 -27.00686 -26.73757 -24.45933 -23.86749 -22.98867 -22.39181 -21.29968 -20.96942 -18.51438 -17.64180 -17.24453 -16.66234 -16.44590 -16.09164 -15.97657 -15.58458 -15.27780 -15.05099 -14.84143 -14.39970 -14.15668 -14.00102 -13.72820 -13.21888 -12.95747 -12.59808 -12.56052 -12.47989 -12.27562 -12.22558 -12.12189 -11.93232 -11.80423 -11.75076 -11.20158 -11.15971 -10.38391 -10.34666 -10.14740 -9.28526 -9.01886 -8.39696 -6.08394 1.57441 1.64415 1.81946 2.63055 2.65298 2.72340 3.26169 3.34270 3.43408 3.57041 3.79209 3.86752 4.03409 4.06697 4.15603 4.22058 4.25366 4.33757 4.36554 4.43137 4.51300 4.55843 4.60418 4.70554 4.73104 4.80336 4.84155 4.92910 4.93917 4.98587 5.06684 5.14806 5.25660 5.46654 5.52759 5.77659 6.10561 6.16972 6.28933 6.35428 6.40857 6.43814 6.86445 7.67996 9.00766 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.005807 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.460289 B = 4820.256489 C = 5191.355993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.020 4.020 3 Si 1.102 2.898 4 H -0.289 1.289 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.039 0.961 9 C 0.004 3.996 10 C 0.116 3.884 11 N -0.533 5.533 12 C 0.071 3.929 13 C -0.100 4.100 14 C 0.067 3.933 15 H 0.063 0.937 16 O -0.397 6.397 17 C 0.018 3.982 18 C 0.024 3.976 19 N -0.681 5.681 20 C 0.073 3.927 21 H 0.069 0.931 22 C 0.073 3.927 23 C -0.184 4.184 24 C -0.173 4.173 25 H 0.263 0.737 26 H 0.017 0.983 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.347 0.653 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -13.278 -10.210 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.219 4.219 3 Si 0.927 3.073 4 H -0.215 1.215 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.057 0.943 9 C 0.003 3.997 10 C -0.012 4.012 11 N -0.258 5.258 12 C -0.057 4.057 13 C -0.139 4.139 14 C 0.008 3.992 15 H 0.080 0.920 16 O -0.316 6.316 17 C -0.060 4.060 18 C -0.105 4.105 19 N -0.311 5.311 20 C -0.038 4.038 21 H 0.087 0.913 22 C -0.056 4.056 23 C -0.222 4.222 24 C -0.211 4.211 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.166 0.834 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.867 -10.516 -10.563 16.018 hybrid contribution -0.005 -2.881 0.695 2.963 sum 5.862 -13.397 -9.868 17.641 Atomic orbital electron populations 1.70840 1.07643 1.30371 1.48635 1.26724 0.96638 1.05127 0.93445 0.83108 0.74254 0.72751 0.77220 1.21532 1.20086 1.20675 1.21263 0.93565 0.90939 1.52537 0.94325 1.19154 0.98859 0.95352 0.86292 1.21423 0.92038 0.95742 0.92016 1.61393 1.07511 1.51394 1.05453 1.21966 0.90387 0.95532 0.97766 1.21458 0.98115 1.01052 0.93230 1.22675 0.89081 0.98447 0.89042 0.91959 1.88049 1.38357 1.81211 1.23994 1.23495 0.99850 0.96273 0.86377 1.22733 0.89880 1.02166 0.95741 1.60846 1.36361 1.24635 1.09220 1.21873 0.93361 0.98706 0.89815 0.91253 1.21868 0.96865 0.96882 0.89979 1.22709 0.94553 1.02042 1.02868 1.22942 0.96739 0.96221 1.05154 0.92713 0.96479 0.94118 0.90182 0.95139 0.89693 0.92260 0.86503 0.91929 0.91156 0.86710 0.83396 0.94380 0.91321 0.92173 0.90255 0.89205 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.18 13.50 21.44 0.29 -55.89 16 2 C -0.02 -1.14 5.38 84.65 0.46 -0.68 16 3 Si 1.10 51.48 29.91 68.60 2.05 53.53 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -29.57 8.01 25.60 0.21 -29.36 16 8 H 0.04 2.15 7.66 -2.91 -0.02 2.12 16 9 C 0.00 0.19 0.16 -52.93 -0.01 0.19 16 10 C 0.12 5.02 4.97 86.30 0.43 5.45 16 11 N -0.53 -20.94 4.43 -896.35 -3.97 -24.90 16 12 C 0.07 2.49 4.71 86.39 0.41 2.89 16 13 C -0.10 -3.12 5.82 30.62 0.18 -2.95 16 14 C 0.07 1.85 2.64 30.65 0.08 1.93 16 15 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 16 O -0.40 -10.73 10.55 -148.98 -1.57 -12.30 16 17 C 0.02 0.33 6.99 71.99 0.50 0.83 16 18 C 0.02 0.45 6.74 86.26 0.58 1.03 16 19 N -0.68 -15.72 6.65 -491.04 -3.27 -18.99 16 20 C 0.07 2.15 2.56 44.96 0.12 2.27 16 21 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 22 C 0.07 2.36 5.10 86.22 0.44 2.80 16 23 C -0.18 -8.29 8.88 30.62 0.27 -8.01 16 24 C -0.17 -7.03 8.18 30.62 0.25 -6.78 16 25 H 0.26 15.69 6.11 -92.71 -0.57 15.12 16 26 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16 27 H 0.04 1.99 7.54 -2.39 -0.02 1.97 16 28 H 0.08 3.19 5.17 -2.39 -0.01 3.17 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.45 8.14 -2.38 -0.02 1.44 16 36 H 0.35 6.68 8.82 -89.69 -0.79 5.89 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 2.40 8.13 -2.38 -0.02 2.38 16 39 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -63.17 322.00 -2.16 -65.33 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.40 Total: 23.63 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 3.91 Total: -30.40 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -6.94 Total: -99.78 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.57 Total: -12.30 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -63.17 -2.16 -65.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404214701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.436 kcal (2) G-P(sol) polarization free energy of solvation -63.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds