Wall clock time and date at job start Mon Mar 30 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00353 * 2 1 4 4 H 1.48494 * 109.47089 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47074 * 120.00120 * 3 2 1 6 6 H 1.48507 * 109.46958 * 240.00114 * 3 2 1 7 7 C 1.37881 * 119.99371 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99798 * 185.21111 * 7 2 1 9 9 C 1.50692 * 120.00337 * 5.19968 * 7 2 1 10 10 C 1.53000 * 115.55386 * 279.36538 * 9 7 2 11 11 N 1.46500 * 109.46901 * 294.82388 * 10 9 7 12 12 C 1.34778 * 119.99834 * 184.76233 * 11 10 9 13 13 O 1.21282 * 120.00298 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99870 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.47410 * 180.02562 * 14 12 11 16 16 H 1.09005 * 110.42994 * 305.69878 * 15 14 12 17 17 C 1.54884 * 110.48721 * 68.23688 * 15 14 12 18 18 C 1.55034 * 102.68334 * 156.51918 * 17 15 14 19 19 C 1.54266 * 104.27939 * 322.23753 * 18 17 15 20 20 C 1.53871 * 106.59900 * 23.51687 * 19 18 17 21 21 H 1.08996 * 110.03091 * 240.71540 * 20 19 18 22 22 N 1.46899 * 110.07598 * 119.30623 * 20 19 18 23 23 C 1.53002 * 117.49847 * 133.65073 * 9 7 2 24 24 C 1.52993 * 60.00349 * 252.51237 * 23 9 7 25 25 H 0.97003 * 119.99737 * 354.99920 * 1 2 3 26 26 H 1.08998 * 109.47131 * 54.82158 * 10 9 7 27 27 H 1.09000 * 109.46903 * 174.82634 * 10 9 7 28 28 H 0.97003 * 119.99929 * 4.75840 * 11 10 9 29 29 H 1.09008 * 109.47004 * 300.00247 * 14 12 11 30 30 H 1.09005 * 109.46879 * 59.99643 * 14 12 11 31 31 H 1.08993 * 110.76080 * 274.94140 * 17 15 14 32 32 H 1.08998 * 110.75608 * 38.31321 * 17 15 14 33 33 H 1.08998 * 110.52639 * 203.49083 * 18 17 15 34 34 H 1.09004 * 110.36469 * 80.90575 * 18 17 15 35 35 H 1.09000 * 110.03262 * 264.22732 * 19 18 17 36 36 H 1.09002 * 110.02865 * 142.80353 * 19 18 17 37 37 H 1.00903 * 110.99788 * 62.80729 * 22 20 19 38 38 H 1.00900 * 111.00325 * 186.75954 * 22 20 19 39 39 H 1.09006 * 117.49850 * 0.02562 * 23 9 7 40 40 H 1.09000 * 117.50117 * 145.02277 * 23 9 7 41 41 H 1.09001 * 117.50151 * 252.51270 * 24 23 9 42 42 H 1.09000 * 117.50073 * 107.48552 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1030 1.6962 -1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0811 -1.1962 0.0844 9 6 1.2556 -2.4964 -0.1194 10 6 0.6265 -3.0165 1.1747 11 7 1.6842 -3.3504 2.1319 12 6 1.3696 -3.9200 3.3122 13 8 0.2110 -4.1558 3.5821 14 6 2.4575 -4.2630 4.2970 15 6 1.8359 -4.8941 5.5445 16 1 1.0653 -4.2426 5.9567 17 6 1.2465 -6.2870 5.2109 18 6 1.2414 -6.9938 6.5908 19 6 2.5435 -6.5175 7.2671 20 6 2.9215 -5.1825 6.6018 21 1 3.8966 -5.2672 6.1223 22 7 2.9456 -4.1087 7.6040 23 6 1.7912 -3.5314 -1.1108 24 6 0.5060 -2.7636 -1.4262 25 1 -0.4850 0.8369 0.0732 26 1 -0.0186 -2.2476 1.5998 27 1 0.0368 -3.9075 0.9595 28 1 2.6109 -3.1616 1.9161 29 1 3.1516 -4.9689 3.8406 30 1 2.9935 -3.3560 4.5768 31 1 0.2340 -6.1942 4.8183 32 1 1.8872 -6.8193 4.5079 33 1 1.2505 -8.0765 6.4657 34 1 0.3736 -6.6833 7.1728 35 1 3.3352 -7.2501 7.1104 36 1 2.3774 -6.3691 8.3341 37 1 3.6516 -4.2829 8.3036 38 1 3.0834 -3.2095 7.1674 39 1 2.6855 -3.2705 -1.6768 40 1 1.6957 -4.5832 -0.8411 41 1 -0.4350 -3.3102 -1.3640 42 1 0.5545 -1.9973 -2.1999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405463281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:02 Heat of formation + Delta-G solvation = -38.680859 kcal Electronic energy + Delta-G solvation = -20499.476232 eV Core-core repulsion = 17478.813886 eV Total energy + Delta-G solvation = -3020.662346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.55194 -38.06031 -36.61273 -33.21995 -32.68515 -32.01791 -31.46785 -27.16969 -26.42577 -25.48616 -24.18710 -21.23198 -20.71905 -19.70725 -19.53120 -19.16922 -16.85513 -16.12479 -15.74886 -15.38202 -15.07449 -14.89970 -14.64211 -14.44387 -13.89066 -13.71810 -13.39646 -12.83460 -12.58084 -12.19133 -11.67305 -11.63227 -11.51144 -11.13109 -11.02019 -10.97040 -10.91872 -10.73123 -10.58076 -10.56028 -10.47337 -10.29393 -9.66137 -9.18776 -8.98130 -8.78876 -8.54545 -8.26035 -8.04357 -6.09801 -4.18985 3.24756 3.28468 3.31469 3.32165 3.89701 4.33232 4.40393 4.56447 4.68016 4.92388 5.17255 5.25410 5.26951 5.37469 5.39607 5.44595 5.59800 5.67861 5.73302 5.81729 5.94258 6.01737 6.06569 6.09103 6.21366 6.31769 6.38883 6.46735 6.57171 6.58479 6.67081 6.91169 7.07214 7.10678 7.31204 7.32582 7.43150 7.47217 7.79294 8.31787 8.36347 8.81564 8.95868 9.48032 10.98135 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.004387 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.585865 B = 6380.970271 C = 7062.629170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.030 3.970 10 C 0.163 3.837 11 N -0.705 5.705 12 C 0.503 3.497 13 O -0.554 6.554 14 C -0.136 4.136 15 C -0.069 4.069 16 H 0.093 0.907 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.118 4.118 20 C 0.087 3.913 21 H 0.037 0.963 22 N -0.845 5.845 23 C -0.210 4.210 24 C -0.153 4.153 25 H 0.263 0.737 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.399 0.601 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.337 0.663 38 H 0.342 0.658 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.125 -10.103 10.507 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.029 3.971 10 C 0.040 3.960 11 N -0.354 5.354 12 C 0.288 3.712 13 O -0.434 6.434 14 C -0.177 4.177 15 C -0.088 4.088 16 H 0.111 0.889 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.024 4.024 21 H 0.055 0.945 22 N -0.375 5.375 23 C -0.247 4.247 24 C -0.192 4.192 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.233 0.767 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.365 -10.349 10.769 15.870 hybrid contribution 1.925 1.329 -0.549 2.402 sum 7.289 -9.020 10.219 15.457 Atomic orbital electron populations 1.69958 1.05900 1.27088 1.48036 1.24985 0.94800 0.98930 0.94277 0.86688 0.79648 0.83200 0.78612 1.21243 1.20267 1.20198 1.20311 0.92566 0.88610 1.52490 0.92272 1.19035 0.98128 0.93557 0.86362 1.20944 0.88562 0.97388 0.89095 1.46013 1.11727 1.60598 1.17044 1.20463 0.90077 0.78024 0.82588 1.90639 1.20852 1.54695 1.77185 1.21768 0.97979 1.02110 0.95820 1.21779 0.96983 0.97663 0.92369 0.88895 1.22542 1.02327 0.94227 0.96197 1.22330 0.97484 0.99379 0.96710 1.22178 0.97707 0.95351 1.00356 1.22072 0.97032 0.91491 0.91807 0.94508 1.58864 1.56456 1.05061 1.17079 1.22976 0.98150 0.95668 1.07888 1.22529 0.92907 1.01516 1.02204 0.92742 0.90875 0.94546 0.76732 0.89551 0.89610 0.90018 0.92156 0.92082 0.91552 0.92262 0.91137 0.85130 0.84532 0.90412 0.91645 0.91656 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.20 13.09 55.43 0.73 -23.47 16 2 C 0.07 1.96 5.42 -17.82 -0.10 1.86 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.50 -12.79 8.57 -34.44 -0.30 -13.09 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.70 1.32 -155.66 -0.21 0.49 16 10 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 11 N -0.71 -13.57 5.48 -60.29 -0.33 -13.90 16 12 C 0.50 9.15 7.63 -10.98 -0.08 9.07 16 13 O -0.55 -12.00 14.61 5.56 0.08 -11.92 16 14 C -0.14 -1.81 5.05 -27.88 -0.14 -1.95 16 15 C -0.07 -0.89 2.11 -88.97 -0.19 -1.08 16 16 H 0.09 1.45 7.87 -51.93 -0.41 1.04 16 17 C -0.12 -1.48 5.71 -24.66 -0.14 -1.63 16 18 C -0.12 -1.31 6.83 -24.99 -0.17 -1.48 16 19 C -0.12 -1.16 6.59 -25.62 -0.17 -1.33 16 20 C 0.09 0.91 3.60 -66.60 -0.24 0.67 16 21 H 0.04 0.36 7.84 -51.93 -0.41 -0.05 16 22 N -0.84 -8.28 9.10 -3.72 -0.03 -8.32 16 23 C -0.21 -4.33 9.95 -26.73 -0.27 -4.60 16 24 C -0.15 -3.49 9.66 -26.73 -0.26 -3.75 16 25 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 26 H 0.07 1.93 8.14 -51.93 -0.42 1.50 16 27 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.40 7.01 8.33 -40.82 -0.34 6.67 16 29 H 0.09 0.98 8.06 -51.92 -0.42 0.56 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.25 7.17 -51.93 -0.37 0.88 16 32 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 37 H 0.34 2.63 9.07 -39.29 -0.36 2.27 16 38 H 0.34 3.21 9.01 -39.29 -0.35 2.86 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -28.97 341.85 -8.96 -37.93 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -7.25 Total: 12.26 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.28 Total: -13.10 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.36 Total: -45.69 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.97 -8.96 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405463281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.753 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds