Wall clock time and date at job start Mon Mar 30 2020 05:15:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86795 * 120.00353 * 2 1
4 4 H 1.48494 * 109.47089 * 359.97438 * 3 2 1
5 5 H 1.48501 * 109.47074 * 120.00120 * 3 2 1
6 6 H 1.48507 * 109.46958 * 240.00114 * 3 2 1
7 7 C 1.37881 * 119.99371 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99798 * 185.21111 * 7 2 1
9 9 C 1.50692 * 120.00337 * 5.19968 * 7 2 1
10 10 C 1.53000 * 115.55386 * 279.36538 * 9 7 2
11 11 N 1.46500 * 109.46901 * 294.82388 * 10 9 7
12 12 C 1.34778 * 119.99834 * 184.76233 * 11 10 9
13 13 O 1.21282 * 120.00298 * 359.97438 * 12 11 10
14 14 C 1.50702 * 119.99870 * 180.02562 * 12 11 10
15 15 C 1.52995 * 109.47410 * 180.02562 * 14 12 11
16 16 H 1.09005 * 110.42994 * 305.69878 * 15 14 12
17 17 C 1.54884 * 110.48721 * 68.23688 * 15 14 12
18 18 C 1.55034 * 102.68334 * 156.51918 * 17 15 14
19 19 C 1.54266 * 104.27939 * 322.23753 * 18 17 15
20 20 C 1.53871 * 106.59900 * 23.51687 * 19 18 17
21 21 H 1.08996 * 110.03091 * 240.71540 * 20 19 18
22 22 N 1.46899 * 110.07598 * 119.30623 * 20 19 18
23 23 C 1.53002 * 117.49847 * 133.65073 * 9 7 2
24 24 C 1.52993 * 60.00349 * 252.51237 * 23 9 7
25 25 H 0.97003 * 119.99737 * 354.99920 * 1 2 3
26 26 H 1.08998 * 109.47131 * 54.82158 * 10 9 7
27 27 H 1.09000 * 109.46903 * 174.82634 * 10 9 7
28 28 H 0.97003 * 119.99929 * 4.75840 * 11 10 9
29 29 H 1.09008 * 109.47004 * 300.00247 * 14 12 11
30 30 H 1.09005 * 109.46879 * 59.99643 * 14 12 11
31 31 H 1.08993 * 110.76080 * 274.94140 * 17 15 14
32 32 H 1.08998 * 110.75608 * 38.31321 * 17 15 14
33 33 H 1.08998 * 110.52639 * 203.49083 * 18 17 15
34 34 H 1.09004 * 110.36469 * 80.90575 * 18 17 15
35 35 H 1.09000 * 110.03262 * 264.22732 * 19 18 17
36 36 H 1.09002 * 110.02865 * 142.80353 * 19 18 17
37 37 H 1.00903 * 110.99788 * 62.80729 * 22 20 19
38 38 H 1.00900 * 111.00325 * 186.75954 * 22 20 19
39 39 H 1.09006 * 117.49850 * 0.02562 * 23 9 7
40 40 H 1.09000 * 117.50117 * 145.02277 * 23 9 7
41 41 H 1.09001 * 117.50151 * 252.51270 * 24 23 9
42 42 H 1.09000 * 117.50073 * 107.48552 * 24 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 1.2843 2.7464 -0.0006
5 1 3.1030 1.6962 1.2125
6 1 3.1030 1.6962 -1.2126
7 6 2.0044 -1.1942 -0.0005
8 1 3.0811 -1.1962 0.0844
9 6 1.2556 -2.4964 -0.1194
10 6 0.6265 -3.0165 1.1747
11 7 1.6842 -3.3504 2.1319
12 6 1.3696 -3.9200 3.3122
13 8 0.2110 -4.1558 3.5821
14 6 2.4575 -4.2630 4.2970
15 6 1.8359 -4.8941 5.5445
16 1 1.0653 -4.2426 5.9567
17 6 1.2465 -6.2870 5.2109
18 6 1.2414 -6.9938 6.5908
19 6 2.5435 -6.5175 7.2671
20 6 2.9215 -5.1825 6.6018
21 1 3.8966 -5.2672 6.1223
22 7 2.9456 -4.1087 7.6040
23 6 1.7912 -3.5314 -1.1108
24 6 0.5060 -2.7636 -1.4262
25 1 -0.4850 0.8369 0.0732
26 1 -0.0186 -2.2476 1.5998
27 1 0.0368 -3.9075 0.9595
28 1 2.6109 -3.1616 1.9161
29 1 3.1516 -4.9689 3.8406
30 1 2.9935 -3.3560 4.5768
31 1 0.2340 -6.1942 4.8183
32 1 1.8872 -6.8193 4.5079
33 1 1.2505 -8.0765 6.4657
34 1 0.3736 -6.6833 7.1728
35 1 3.3352 -7.2501 7.1104
36 1 2.3774 -6.3691 8.3341
37 1 3.6516 -4.2829 8.3036
38 1 3.0834 -3.2095 7.1674
39 1 2.6855 -3.2705 -1.6768
40 1 1.6957 -4.5832 -0.8411
41 1 -0.4350 -3.3102 -1.3640
42 1 0.5545 -1.9973 -2.1999
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000405463281.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:02
Heat of formation + Delta-G solvation = -38.680859 kcal
Electronic energy + Delta-G solvation = -20499.476232 eV
Core-core repulsion = 17478.813886 eV
Total energy + Delta-G solvation = -3020.662346 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.55194 -38.06031 -36.61273 -33.21995 -32.68515 -32.01791 -31.46785 -27.16969
-26.42577 -25.48616 -24.18710 -21.23198 -20.71905 -19.70725 -19.53120 -19.16922
-16.85513 -16.12479 -15.74886 -15.38202 -15.07449 -14.89970 -14.64211 -14.44387
-13.89066 -13.71810 -13.39646 -12.83460 -12.58084 -12.19133 -11.67305 -11.63227
-11.51144 -11.13109 -11.02019 -10.97040 -10.91872 -10.73123 -10.58076 -10.56028
-10.47337 -10.29393 -9.66137 -9.18776 -8.98130 -8.78876 -8.54545 -8.26035
-8.04357 -6.09801 -4.18985 3.24756 3.28468 3.31469 3.32165 3.89701
4.33232 4.40393 4.56447 4.68016 4.92388 5.17255 5.25410 5.26951
5.37469 5.39607 5.44595 5.59800 5.67861 5.73302 5.81729 5.94258
6.01737 6.06569 6.09103 6.21366 6.31769 6.38883 6.46735 6.57171
6.58479 6.67081 6.91169 7.07214 7.10678 7.31204 7.32582 7.43150
7.47217 7.79294 8.31787 8.36347 8.81564 8.95868 9.48032 10.98135
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.024141 B = 0.004387 C = 0.003964
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1159.585865 B = 6380.970271 C = 7062.629170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.874 5.874
2 C 0.074 3.926
3 Si 0.891 3.109
4 H -0.287 1.287
5 H -0.277 1.277
6 H -0.276 1.276
7 C -0.502 4.502
8 H 0.059 0.941
9 C 0.030 3.970
10 C 0.163 3.837
11 N -0.705 5.705
12 C 0.503 3.497
13 O -0.554 6.554
14 C -0.136 4.136
15 C -0.069 4.069
16 H 0.093 0.907
17 C -0.115 4.115
18 C -0.121 4.121
19 C -0.118 4.118
20 C 0.087 3.913
21 H 0.037 0.963
22 N -0.845 5.845
23 C -0.210 4.210
24 C -0.153 4.153
25 H 0.263 0.737
26 H 0.073 0.927
27 H 0.036 0.964
28 H 0.399 0.601
29 H 0.086 0.914
30 H 0.085 0.915
31 H 0.081 0.919
32 H 0.060 0.940
33 H 0.060 0.940
34 H 0.066 0.934
35 H 0.059 0.941
36 H 0.070 0.930
37 H 0.337 0.663
38 H 0.342 0.658
39 H 0.077 0.923
40 H 0.065 0.935
41 H 0.065 0.935
42 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.125 -10.103 10.507 16.224
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.510 5.510
2 C -0.130 4.130
3 Si 0.719 3.281
4 H -0.212 1.212
5 H -0.203 1.203
6 H -0.202 1.202
7 C -0.540 4.540
8 H 0.077 0.923
9 C 0.029 3.971
10 C 0.040 3.960
11 N -0.354 5.354
12 C 0.288 3.712
13 O -0.434 6.434
14 C -0.177 4.177
15 C -0.088 4.088
16 H 0.111 0.889
17 C -0.153 4.153
18 C -0.159 4.159
19 C -0.156 4.156
20 C -0.024 4.024
21 H 0.055 0.945
22 N -0.375 5.375
23 C -0.247 4.247
24 C -0.192 4.192
25 H 0.073 0.927
26 H 0.091 0.909
27 H 0.055 0.945
28 H 0.233 0.767
29 H 0.104 0.896
30 H 0.104 0.896
31 H 0.100 0.900
32 H 0.078 0.922
33 H 0.079 0.921
34 H 0.084 0.916
35 H 0.077 0.923
36 H 0.089 0.911
37 H 0.149 0.851
38 H 0.155 0.845
39 H 0.096 0.904
40 H 0.084 0.916
41 H 0.083 0.917
42 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 5.365 -10.349 10.769 15.870
hybrid contribution 1.925 1.329 -0.549 2.402
sum 7.289 -9.020 10.219 15.457
Atomic orbital electron populations
1.69958 1.05900 1.27088 1.48036 1.24985 0.94800 0.98930 0.94277
0.86688 0.79648 0.83200 0.78612 1.21243 1.20267 1.20198 1.20311
0.92566 0.88610 1.52490 0.92272 1.19035 0.98128 0.93557 0.86362
1.20944 0.88562 0.97388 0.89095 1.46013 1.11727 1.60598 1.17044
1.20463 0.90077 0.78024 0.82588 1.90639 1.20852 1.54695 1.77185
1.21768 0.97979 1.02110 0.95820 1.21779 0.96983 0.97663 0.92369
0.88895 1.22542 1.02327 0.94227 0.96197 1.22330 0.97484 0.99379
0.96710 1.22178 0.97707 0.95351 1.00356 1.22072 0.97032 0.91491
0.91807 0.94508 1.58864 1.56456 1.05061 1.17079 1.22976 0.98150
0.95668 1.07888 1.22529 0.92907 1.01516 1.02204 0.92742 0.90875
0.94546 0.76732 0.89551 0.89610 0.90018 0.92156 0.92082 0.91552
0.92262 0.91137 0.85130 0.84532 0.90412 0.91645 0.91656 0.89943
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.20 13.09 55.43 0.73 -23.47 16
2 C 0.07 1.96 5.42 -17.82 -0.10 1.86 16
3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16
4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
7 C -0.50 -12.79 8.57 -34.44 -0.30 -13.09 16
8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16
9 C 0.03 0.70 1.32 -155.66 -0.21 0.49 16
10 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16
11 N -0.71 -13.57 5.48 -60.29 -0.33 -13.90 16
12 C 0.50 9.15 7.63 -10.98 -0.08 9.07 16
13 O -0.55 -12.00 14.61 5.56 0.08 -11.92 16
14 C -0.14 -1.81 5.05 -27.88 -0.14 -1.95 16
15 C -0.07 -0.89 2.11 -88.97 -0.19 -1.08 16
16 H 0.09 1.45 7.87 -51.93 -0.41 1.04 16
17 C -0.12 -1.48 5.71 -24.66 -0.14 -1.63 16
18 C -0.12 -1.31 6.83 -24.99 -0.17 -1.48 16
19 C -0.12 -1.16 6.59 -25.62 -0.17 -1.33 16
20 C 0.09 0.91 3.60 -66.60 -0.24 0.67 16
21 H 0.04 0.36 7.84 -51.93 -0.41 -0.05 16
22 N -0.84 -8.28 9.10 -3.72 -0.03 -8.32 16
23 C -0.21 -4.33 9.95 -26.73 -0.27 -4.60 16
24 C -0.15 -3.49 9.66 -26.73 -0.26 -3.75 16
25 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16
26 H 0.07 1.93 8.14 -51.93 -0.42 1.50 16
27 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16
28 H 0.40 7.01 8.33 -40.82 -0.34 6.67 16
29 H 0.09 0.98 8.06 -51.92 -0.42 0.56 16
30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
31 H 0.08 1.25 7.17 -51.93 -0.37 0.88 16
32 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16
33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16
37 H 0.34 2.63 9.07 -39.29 -0.36 2.27 16
38 H 0.34 3.21 9.01 -39.29 -0.35 2.86 16
39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16
40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
41 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16
42 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16
LS Contribution 341.85 15.07 5.15 5.15
Total: -1.00 -28.97 341.85 -8.96 -37.93
By element:
Atomic # 1 Polarization: 19.51 SS G_CDS: -7.25 Total: 12.26 kcal
Atomic # 6 Polarization: -10.82 SS G_CDS: -2.28 Total: -13.10 kcal
Atomic # 7 Polarization: -46.05 SS G_CDS: 0.36 Total: -45.69 kcal
Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal
Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -28.97 -8.96 -37.93 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000405463281.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.753 kcal
(2) G-P(sol) polarization free energy of solvation -28.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.681 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds