Wall clock time and date at job start Mon Mar 30 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00353 * 2 1 4 4 H 1.48494 * 109.47089 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47074 * 120.00120 * 3 2 1 6 6 H 1.48507 * 109.46958 * 240.00114 * 3 2 1 7 7 C 1.37881 * 119.99371 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99798 * 185.21111 * 7 2 1 9 9 C 1.50692 * 120.00337 * 5.19968 * 7 2 1 10 10 C 1.53000 * 115.55386 * 279.36538 * 9 7 2 11 11 N 1.46500 * 109.46901 * 294.82388 * 10 9 7 12 12 C 1.34778 * 119.99834 * 184.76233 * 11 10 9 13 13 O 1.21282 * 120.00298 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99870 * 180.02562 * 12 11 10 15 15 C 1.52995 * 109.47410 * 180.02562 * 14 12 11 16 16 H 1.09005 * 110.42994 * 305.69878 * 15 14 12 17 17 C 1.54884 * 110.48721 * 68.23688 * 15 14 12 18 18 C 1.55034 * 102.68334 * 156.51918 * 17 15 14 19 19 C 1.54266 * 104.27939 * 322.23753 * 18 17 15 20 20 C 1.53871 * 106.59900 * 23.51687 * 19 18 17 21 21 H 1.08996 * 110.03091 * 240.71540 * 20 19 18 22 22 N 1.46899 * 110.07598 * 119.30623 * 20 19 18 23 23 C 1.53002 * 117.49847 * 133.65073 * 9 7 2 24 24 C 1.52993 * 60.00349 * 252.51237 * 23 9 7 25 25 H 0.97003 * 119.99737 * 354.99920 * 1 2 3 26 26 H 1.08998 * 109.47131 * 54.82158 * 10 9 7 27 27 H 1.09000 * 109.46903 * 174.82634 * 10 9 7 28 28 H 0.97003 * 119.99929 * 4.75840 * 11 10 9 29 29 H 1.09008 * 109.47004 * 300.00247 * 14 12 11 30 30 H 1.09005 * 109.46879 * 59.99643 * 14 12 11 31 31 H 1.08993 * 110.76080 * 274.94140 * 17 15 14 32 32 H 1.08998 * 110.75608 * 38.31321 * 17 15 14 33 33 H 1.08998 * 110.52639 * 203.49083 * 18 17 15 34 34 H 1.09004 * 110.36469 * 80.90575 * 18 17 15 35 35 H 1.09000 * 110.03262 * 264.22732 * 19 18 17 36 36 H 1.09002 * 110.02865 * 142.80353 * 19 18 17 37 37 H 1.00903 * 110.99788 * 62.80729 * 22 20 19 38 38 H 1.00900 * 111.00325 * 186.75954 * 22 20 19 39 39 H 1.09006 * 117.49850 * 0.02562 * 23 9 7 40 40 H 1.09000 * 117.50117 * 145.02277 * 23 9 7 41 41 H 1.09001 * 117.50151 * 252.51270 * 24 23 9 42 42 H 1.09000 * 117.50073 * 107.48552 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1030 1.6962 -1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0811 -1.1962 0.0844 9 6 1.2556 -2.4964 -0.1194 10 6 0.6265 -3.0165 1.1747 11 7 1.6842 -3.3504 2.1319 12 6 1.3696 -3.9200 3.3122 13 8 0.2110 -4.1558 3.5821 14 6 2.4575 -4.2630 4.2970 15 6 1.8359 -4.8941 5.5445 16 1 1.0653 -4.2426 5.9567 17 6 1.2465 -6.2870 5.2109 18 6 1.2414 -6.9938 6.5908 19 6 2.5435 -6.5175 7.2671 20 6 2.9215 -5.1825 6.6018 21 1 3.8966 -5.2672 6.1223 22 7 2.9456 -4.1087 7.6040 23 6 1.7912 -3.5314 -1.1108 24 6 0.5060 -2.7636 -1.4262 25 1 -0.4850 0.8369 0.0732 26 1 -0.0186 -2.2476 1.5998 27 1 0.0368 -3.9075 0.9595 28 1 2.6109 -3.1616 1.9161 29 1 3.1516 -4.9689 3.8406 30 1 2.9935 -3.3560 4.5768 31 1 0.2340 -6.1942 4.8183 32 1 1.8872 -6.8193 4.5079 33 1 1.2505 -8.0765 6.4657 34 1 0.3736 -6.6833 7.1728 35 1 3.3352 -7.2501 7.1104 36 1 2.3774 -6.3691 8.3341 37 1 3.6516 -4.2829 8.3036 38 1 3.0834 -3.2095 7.1674 39 1 2.6855 -3.2705 -1.6768 40 1 1.6957 -4.5832 -0.8411 41 1 -0.4350 -3.3102 -1.3640 42 1 0.5545 -1.9973 -2.1999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405463281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:02 Heat of formation + Delta-G solvation = -57.990187 kcal Electronic energy + Delta-G solvation = -20500.313547 eV Core-core repulsion = 17478.813886 eV Total energy + Delta-G solvation = -3021.499661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89097 -39.25841 -38.31689 -34.86778 -33.99632 -33.52365 -32.54849 -28.53750 -27.65119 -27.20923 -25.49018 -22.98452 -21.75421 -21.32015 -20.86676 -20.39246 -18.39007 -17.70157 -16.96026 -16.71201 -16.41623 -16.33463 -15.99873 -15.65636 -15.37610 -14.86211 -14.70649 -14.36193 -14.10549 -13.60352 -13.48079 -13.01837 -12.90566 -12.77882 -12.42916 -12.38226 -12.09726 -12.04843 -11.88792 -11.69482 -11.58547 -11.46431 -11.37963 -10.87093 -10.74972 -10.47591 -10.02991 -9.77246 -9.52208 -8.09809 -6.23659 1.43693 1.45397 1.51889 1.82653 2.40731 2.46948 3.18726 3.47786 3.59286 3.66821 3.73830 3.99475 4.17974 4.25889 4.36180 4.44764 4.54080 4.55099 4.61135 4.65373 4.70653 4.75068 4.82480 4.92919 4.97611 5.03473 5.12235 5.14254 5.23963 5.26201 5.31609 5.39421 5.56241 5.57550 5.59871 5.72333 5.79061 6.36385 6.36710 6.67612 6.81302 6.88084 7.46026 7.48438 8.97678 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.004387 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.585865 B = 6380.970271 C = 7062.629170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.951 3.049 4 H -0.293 1.293 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.007 3.993 10 C 0.180 3.820 11 N -0.702 5.702 12 C 0.498 3.502 13 O -0.594 6.594 14 C -0.125 4.125 15 C -0.069 4.069 16 H 0.059 0.941 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.114 4.114 20 C 0.094 3.906 21 H 0.056 0.944 22 N -0.855 5.855 23 C -0.174 4.174 24 C -0.167 4.167 25 H 0.258 0.742 26 H 0.027 0.973 27 H 0.031 0.969 28 H 0.410 0.590 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.350 0.650 38 H 0.344 0.656 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.082 -11.106 11.223 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.777 3.223 4 H -0.219 1.219 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.542 4.542 8 H 0.084 0.916 9 C 0.007 3.993 10 C 0.055 3.945 11 N -0.352 5.352 12 C 0.286 3.714 13 O -0.476 6.476 14 C -0.164 4.164 15 C -0.088 4.088 16 H 0.077 0.923 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.017 4.017 21 H 0.074 0.926 22 N -0.386 5.386 23 C -0.211 4.211 24 C -0.205 4.205 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.245 0.755 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.371 -11.361 11.496 18.202 hybrid contribution 0.953 1.606 -0.772 2.021 sum 9.324 -9.754 10.725 17.237 Atomic orbital electron populations 1.70102 1.07391 1.27400 1.49784 1.25721 0.95409 1.02143 0.94332 0.85731 0.78344 0.79301 0.78951 1.21925 1.19354 1.19526 1.20644 0.92961 0.89447 1.51193 0.91636 1.19067 0.99227 0.94287 0.86755 1.20478 0.88947 0.95576 0.89496 1.45923 1.11377 1.60847 1.17028 1.21407 0.90787 0.76609 0.82572 1.90631 1.23097 1.56025 1.77818 1.21791 0.96479 1.03770 0.94378 1.21725 0.97163 0.96888 0.93026 0.92286 1.22508 1.00550 0.94877 0.97575 1.22312 0.97888 1.00151 0.95310 1.22179 0.97445 0.95408 1.00144 1.21993 0.96613 0.91876 0.91264 0.92627 1.58816 1.57372 1.05064 1.17392 1.22963 0.96997 0.96049 1.05097 1.22478 0.94404 1.02032 1.01593 0.93265 0.95419 0.95097 0.75486 0.86465 0.87615 0.93496 0.90978 0.90520 0.92843 0.90213 0.91004 0.83630 0.84311 0.89400 0.89413 0.91339 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 13.09 21.45 0.28 -51.34 16 2 C 0.02 1.30 5.42 84.66 0.46 1.76 16 3 Si 0.95 41.73 29.54 68.60 2.03 43.76 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.50 -25.43 8.57 25.60 0.22 -25.21 16 8 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.01 0.34 1.32 -52.93 -0.07 0.27 16 10 C 0.18 8.34 5.50 86.38 0.48 8.81 16 11 N -0.70 -26.62 5.48 -463.05 -2.54 -29.16 16 12 C 0.50 17.97 7.63 87.66 0.67 18.64 16 13 O -0.59 -26.53 14.61 -3.04 -0.04 -26.58 16 14 C -0.12 -3.02 5.05 29.85 0.15 -2.87 16 15 C -0.07 -1.70 2.11 -9.72 -0.02 -1.72 16 16 H 0.06 1.87 7.87 -2.38 -0.02 1.85 16 17 C -0.12 -2.94 5.71 31.93 0.18 -2.76 16 18 C -0.12 -2.41 6.83 31.72 0.22 -2.19 16 19 C -0.11 -1.91 6.59 31.32 0.21 -1.71 16 20 C 0.09 1.70 3.60 45.64 0.16 1.87 16 21 H 0.06 0.84 7.84 -2.39 -0.02 0.82 16 22 N -0.85 -14.85 9.10 -165.69 -1.51 -16.36 16 23 C -0.17 -6.84 9.95 30.59 0.30 -6.54 16 24 C -0.17 -7.60 9.66 30.59 0.30 -7.31 16 25 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 26 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 28 H 0.41 13.67 8.33 -92.71 -0.77 12.90 16 29 H 0.12 2.20 8.06 -2.38 -0.02 2.18 16 30 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.05 1.49 7.17 -2.39 -0.02 1.47 16 32 H 0.07 1.61 8.00 -2.39 -0.02 1.59 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.21 7.92 -2.39 -0.02 1.19 16 37 H 0.35 4.50 9.07 -89.69 -0.81 3.69 16 38 H 0.34 5.76 9.01 -89.69 -0.81 4.95 16 39 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 40 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -64.21 341.85 0.10 -64.11 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -1.37 Total: 34.51 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 3.25 Total: -18.96 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -3.77 Total: -96.85 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.04 Total: -26.58 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -64.21 0.10 -64.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405463281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.120 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds