Wall clock time and date at job start Mon Mar 30 2020 05:15:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86795 * 120.00353 * 2 1
4 4 H 1.48494 * 109.47089 * 359.97438 * 3 2 1
5 5 H 1.48501 * 109.47074 * 120.00120 * 3 2 1
6 6 H 1.48507 * 109.46958 * 240.00114 * 3 2 1
7 7 C 1.37881 * 119.99371 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99798 * 185.21111 * 7 2 1
9 9 C 1.50692 * 120.00337 * 5.19968 * 7 2 1
10 10 C 1.53000 * 115.55386 * 279.36538 * 9 7 2
11 11 N 1.46500 * 109.46901 * 294.82388 * 10 9 7
12 12 C 1.34778 * 119.99834 * 184.76233 * 11 10 9
13 13 O 1.21282 * 120.00298 * 359.97438 * 12 11 10
14 14 C 1.50702 * 119.99870 * 180.02562 * 12 11 10
15 15 C 1.52995 * 109.47410 * 180.02562 * 14 12 11
16 16 H 1.09005 * 110.42994 * 305.69878 * 15 14 12
17 17 C 1.54884 * 110.48721 * 68.23688 * 15 14 12
18 18 C 1.55034 * 102.68334 * 156.51918 * 17 15 14
19 19 C 1.54266 * 104.27939 * 322.23753 * 18 17 15
20 20 C 1.53871 * 106.59900 * 23.51687 * 19 18 17
21 21 H 1.08996 * 110.03091 * 240.71540 * 20 19 18
22 22 N 1.46899 * 110.07598 * 119.30623 * 20 19 18
23 23 C 1.53002 * 117.49847 * 133.65073 * 9 7 2
24 24 C 1.52993 * 60.00349 * 252.51237 * 23 9 7
25 25 H 0.97003 * 119.99737 * 354.99920 * 1 2 3
26 26 H 1.08998 * 109.47131 * 54.82158 * 10 9 7
27 27 H 1.09000 * 109.46903 * 174.82634 * 10 9 7
28 28 H 0.97003 * 119.99929 * 4.75840 * 11 10 9
29 29 H 1.09008 * 109.47004 * 300.00247 * 14 12 11
30 30 H 1.09005 * 109.46879 * 59.99643 * 14 12 11
31 31 H 1.08993 * 110.76080 * 274.94140 * 17 15 14
32 32 H 1.08998 * 110.75608 * 38.31321 * 17 15 14
33 33 H 1.08998 * 110.52639 * 203.49083 * 18 17 15
34 34 H 1.09004 * 110.36469 * 80.90575 * 18 17 15
35 35 H 1.09000 * 110.03262 * 264.22732 * 19 18 17
36 36 H 1.09002 * 110.02865 * 142.80353 * 19 18 17
37 37 H 1.00903 * 110.99788 * 62.80729 * 22 20 19
38 38 H 1.00900 * 111.00325 * 186.75954 * 22 20 19
39 39 H 1.09006 * 117.49850 * 0.02562 * 23 9 7
40 40 H 1.09000 * 117.50117 * 145.02277 * 23 9 7
41 41 H 1.09001 * 117.50151 * 252.51270 * 24 23 9
42 42 H 1.09000 * 117.50073 * 107.48552 * 24 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 1.2843 2.7464 -0.0006
5 1 3.1030 1.6962 1.2125
6 1 3.1030 1.6962 -1.2126
7 6 2.0044 -1.1942 -0.0005
8 1 3.0811 -1.1962 0.0844
9 6 1.2556 -2.4964 -0.1194
10 6 0.6265 -3.0165 1.1747
11 7 1.6842 -3.3504 2.1319
12 6 1.3696 -3.9200 3.3122
13 8 0.2110 -4.1558 3.5821
14 6 2.4575 -4.2630 4.2970
15 6 1.8359 -4.8941 5.5445
16 1 1.0653 -4.2426 5.9567
17 6 1.2465 -6.2870 5.2109
18 6 1.2414 -6.9938 6.5908
19 6 2.5435 -6.5175 7.2671
20 6 2.9215 -5.1825 6.6018
21 1 3.8966 -5.2672 6.1223
22 7 2.9456 -4.1087 7.6040
23 6 1.7912 -3.5314 -1.1108
24 6 0.5060 -2.7636 -1.4262
25 1 -0.4850 0.8369 0.0732
26 1 -0.0186 -2.2476 1.5998
27 1 0.0368 -3.9075 0.9595
28 1 2.6109 -3.1616 1.9161
29 1 3.1516 -4.9689 3.8406
30 1 2.9935 -3.3560 4.5768
31 1 0.2340 -6.1942 4.8183
32 1 1.8872 -6.8193 4.5079
33 1 1.2505 -8.0765 6.4657
34 1 0.3736 -6.6833 7.1728
35 1 3.3352 -7.2501 7.1104
36 1 2.3774 -6.3691 8.3341
37 1 3.6516 -4.2829 8.3036
38 1 3.0834 -3.2095 7.1674
39 1 2.6855 -3.2705 -1.6768
40 1 1.6957 -4.5832 -0.8411
41 1 -0.4350 -3.3102 -1.3640
42 1 0.5545 -1.9973 -2.1999
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000405463281.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:02
Heat of formation + Delta-G solvation = -57.990187 kcal
Electronic energy + Delta-G solvation = -20500.313547 eV
Core-core repulsion = 17478.813886 eV
Total energy + Delta-G solvation = -3021.499661 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.89097 -39.25841 -38.31689 -34.86778 -33.99632 -33.52365 -32.54849 -28.53750
-27.65119 -27.20923 -25.49018 -22.98452 -21.75421 -21.32015 -20.86676 -20.39246
-18.39007 -17.70157 -16.96026 -16.71201 -16.41623 -16.33463 -15.99873 -15.65636
-15.37610 -14.86211 -14.70649 -14.36193 -14.10549 -13.60352 -13.48079 -13.01837
-12.90566 -12.77882 -12.42916 -12.38226 -12.09726 -12.04843 -11.88792 -11.69482
-11.58547 -11.46431 -11.37963 -10.87093 -10.74972 -10.47591 -10.02991 -9.77246
-9.52208 -8.09809 -6.23659 1.43693 1.45397 1.51889 1.82653 2.40731
2.46948 3.18726 3.47786 3.59286 3.66821 3.73830 3.99475 4.17974
4.25889 4.36180 4.44764 4.54080 4.55099 4.61135 4.65373 4.70653
4.75068 4.82480 4.92919 4.97611 5.03473 5.12235 5.14254 5.23963
5.26201 5.31609 5.39421 5.56241 5.57550 5.59871 5.72333 5.79061
6.36385 6.36710 6.67612 6.81302 6.88084 7.46026 7.48438 8.97678
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.024141 B = 0.004387 C = 0.003964
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1159.585865 B = 6380.970271 C = 7062.629170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.025 3.975
3 Si 0.951 3.049
4 H -0.293 1.293
5 H -0.269 1.269
6 H -0.270 1.270
7 C -0.505 4.505
8 H 0.066 0.934
9 C 0.007 3.993
10 C 0.180 3.820
11 N -0.702 5.702
12 C 0.498 3.502
13 O -0.594 6.594
14 C -0.125 4.125
15 C -0.069 4.069
16 H 0.059 0.941
17 C -0.117 4.117
18 C -0.119 4.119
19 C -0.114 4.114
20 C 0.094 3.906
21 H 0.056 0.944
22 N -0.855 5.855
23 C -0.174 4.174
24 C -0.167 4.167
25 H 0.258 0.742
26 H 0.027 0.973
27 H 0.031 0.969
28 H 0.410 0.590
29 H 0.117 0.883
30 H 0.106 0.894
31 H 0.046 0.954
32 H 0.072 0.928
33 H 0.076 0.924
34 H 0.053 0.947
35 H 0.079 0.921
36 H 0.071 0.929
37 H 0.350 0.650
38 H 0.344 0.656
39 H 0.088 0.912
40 H 0.087 0.913
41 H 0.068 0.932
42 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.082 -11.106 11.223 18.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.176 4.176
3 Si 0.777 3.223
4 H -0.219 1.219
5 H -0.194 1.194
6 H -0.195 1.195
7 C -0.542 4.542
8 H 0.084 0.916
9 C 0.007 3.993
10 C 0.055 3.945
11 N -0.352 5.352
12 C 0.286 3.714
13 O -0.476 6.476
14 C -0.164 4.164
15 C -0.088 4.088
16 H 0.077 0.923
17 C -0.155 4.155
18 C -0.157 4.157
19 C -0.152 4.152
20 C -0.017 4.017
21 H 0.074 0.926
22 N -0.386 5.386
23 C -0.211 4.211
24 C -0.205 4.205
25 H 0.067 0.933
26 H 0.046 0.954
27 H 0.049 0.951
28 H 0.245 0.755
29 H 0.135 0.865
30 H 0.124 0.876
31 H 0.065 0.935
32 H 0.090 0.910
33 H 0.095 0.905
34 H 0.072 0.928
35 H 0.098 0.902
36 H 0.090 0.910
37 H 0.164 0.836
38 H 0.157 0.843
39 H 0.106 0.894
40 H 0.106 0.894
41 H 0.087 0.913
42 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 8.371 -11.361 11.496 18.202
hybrid contribution 0.953 1.606 -0.772 2.021
sum 9.324 -9.754 10.725 17.237
Atomic orbital electron populations
1.70102 1.07391 1.27400 1.49784 1.25721 0.95409 1.02143 0.94332
0.85731 0.78344 0.79301 0.78951 1.21925 1.19354 1.19526 1.20644
0.92961 0.89447 1.51193 0.91636 1.19067 0.99227 0.94287 0.86755
1.20478 0.88947 0.95576 0.89496 1.45923 1.11377 1.60847 1.17028
1.21407 0.90787 0.76609 0.82572 1.90631 1.23097 1.56025 1.77818
1.21791 0.96479 1.03770 0.94378 1.21725 0.97163 0.96888 0.93026
0.92286 1.22508 1.00550 0.94877 0.97575 1.22312 0.97888 1.00151
0.95310 1.22179 0.97445 0.95408 1.00144 1.21993 0.96613 0.91876
0.91264 0.92627 1.58816 1.57372 1.05064 1.17392 1.22963 0.96997
0.96049 1.05097 1.22478 0.94404 1.02032 1.01593 0.93265 0.95419
0.95097 0.75486 0.86465 0.87615 0.93496 0.90978 0.90520 0.92843
0.90213 0.91004 0.83630 0.84311 0.89400 0.89413 0.91339 0.91771
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.62 13.09 21.45 0.28 -51.34 16
2 C 0.02 1.30 5.42 84.66 0.46 1.76 16
3 Si 0.95 41.73 29.54 68.60 2.03 43.76 16
4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16
5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16
6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16
7 C -0.50 -25.43 8.57 25.60 0.22 -25.21 16
8 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16
9 C 0.01 0.34 1.32 -52.93 -0.07 0.27 16
10 C 0.18 8.34 5.50 86.38 0.48 8.81 16
11 N -0.70 -26.62 5.48 -463.05 -2.54 -29.16 16
12 C 0.50 17.97 7.63 87.66 0.67 18.64 16
13 O -0.59 -26.53 14.61 -3.04 -0.04 -26.58 16
14 C -0.12 -3.02 5.05 29.85 0.15 -2.87 16
15 C -0.07 -1.70 2.11 -9.72 -0.02 -1.72 16
16 H 0.06 1.87 7.87 -2.38 -0.02 1.85 16
17 C -0.12 -2.94 5.71 31.93 0.18 -2.76 16
18 C -0.12 -2.41 6.83 31.72 0.22 -2.19 16
19 C -0.11 -1.91 6.59 31.32 0.21 -1.71 16
20 C 0.09 1.70 3.60 45.64 0.16 1.87 16
21 H 0.06 0.84 7.84 -2.39 -0.02 0.82 16
22 N -0.85 -14.85 9.10 -165.69 -1.51 -16.36 16
23 C -0.17 -6.84 9.95 30.59 0.30 -6.54 16
24 C -0.17 -7.60 9.66 30.59 0.30 -7.31 16
25 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16
26 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16
27 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16
28 H 0.41 13.67 8.33 -92.71 -0.77 12.90 16
29 H 0.12 2.20 8.06 -2.38 -0.02 2.18 16
30 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16
31 H 0.05 1.49 7.17 -2.39 -0.02 1.47 16
32 H 0.07 1.61 8.00 -2.39 -0.02 1.59 16
33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16
35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
36 H 0.07 1.21 7.92 -2.39 -0.02 1.19 16
37 H 0.35 4.50 9.07 -89.69 -0.81 3.69 16
38 H 0.34 5.76 9.01 -89.69 -0.81 4.95 16
39 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16
40 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16
41 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16
42 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16
Total: -1.00 -64.21 341.85 0.10 -64.11
By element:
Atomic # 1 Polarization: 35.89 SS G_CDS: -1.37 Total: 34.51 kcal
Atomic # 6 Polarization: -22.21 SS G_CDS: 3.25 Total: -18.96 kcal
Atomic # 7 Polarization: -93.08 SS G_CDS: -3.77 Total: -96.85 kcal
Atomic # 8 Polarization: -26.53 SS G_CDS: -0.04 Total: -26.58 kcal
Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal
Total: -64.21 0.10 -64.11 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000405463281.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.120 kcal
(2) G-P(sol) polarization free energy of solvation -64.207 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.087 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds