Wall clock time and date at job start Mon Mar 30 2020 05:40:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 112.84596 * 2 1
4 4 N 1.46897 * 109.47447 * 295.68288 * 3 2 1
5 5 C 1.46898 * 110.99968 * 285.57877 * 4 3 2
6 6 C 1.53235 * 109.34116 * 172.74748 * 5 4 3
7 7 N 1.47079 * 108.52337 * 53.82562 * 6 5 4
8 8 C 1.34779 * 120.88161 * 128.79303 * 7 6 5
9 9 O 1.21688 * 120.00099 * 174.84129 * 8 7 6
10 10 C 1.46375 * 119.99749 * 354.84223 * 8 7 6
11 11 H 1.07999 * 120.00334 * 351.60628 * 10 8 7
12 12 C 1.40049 * 119.99541 * 171.60366 * 10 8 7
13 13 N 1.30672 * 120.00456 * 0.02562 * 12 10 8
14 14 Si 1.86806 * 119.99801 * 179.97438 * 12 10 8
15 15 H 1.48500 * 109.46852 * 0.02562 * 14 12 10
16 16 H 1.48504 * 109.46770 * 120.00010 * 14 12 10
17 17 H 1.48491 * 109.47222 * 240.00203 * 14 12 10
18 18 C 1.47080 * 118.23910 * 308.82206 * 7 6 5
19 19 C 1.46903 * 110.99781 * 161.27585 * 4 3 2
20 20 C 1.53775 * 113.69243 * 131.26898 * 2 1 3
21 21 C 1.53785 * 87.08255 * 89.13022 * 20 2 1
22 22 C 1.53783 * 87.07944 * 25.43269 * 21 20 2
23 23 H 1.09002 * 109.47470 * 64.88761 * 1 2 3
24 24 H 1.09000 * 109.47067 * 184.88344 * 1 2 3
25 25 H 1.08997 * 109.47493 * 304.88259 * 1 2 3
26 26 H 1.08997 * 109.46697 * 175.67574 * 3 2 1
27 27 H 1.09003 * 109.47154 * 55.68365 * 3 2 1
28 28 H 1.09010 * 109.48883 * 292.70624 * 5 4 3
29 29 H 1.09001 * 109.49507 * 52.78419 * 5 4 3
30 30 H 1.08994 * 109.62706 * 294.11998 * 6 5 4
31 31 H 1.08999 * 109.62791 * 173.53883 * 6 5 4
32 32 H 0.97000 * 120.00561 * 180.02562 * 13 12 10
33 33 H 1.09005 * 109.62557 * 291.47106 * 18 7 6
34 34 H 1.09001 * 109.63177 * 170.89110 * 18 7 6
35 35 H 1.09001 * 109.48891 * 307.20879 * 19 4 3
36 36 H 1.08996 * 109.49600 * 67.29305 * 19 4 3
37 37 H 1.09000 * 113.61580 * 203.67978 * 20 2 1
38 38 H 1.09001 * 113.61502 * 334.58474 * 20 2 1
39 39 H 1.08996 * 113.61214 * 270.88886 * 21 20 2
40 40 H 1.08993 * 113.61496 * 139.98246 * 21 20 2
41 41 H 1.08993 * 113.61717 * 220.02259 * 22 21 20
42 42 H 1.08999 * 113.69232 * 89.12672 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1241 1.4100 0.0000
4 7 1.7611 2.0944 -1.2481
5 6 2.5443 1.5780 -2.3786
6 6 2.0132 2.1832 -3.6824
7 7 2.0054 3.6478 -3.5485
8 6 2.5779 4.4310 -4.4842
9 8 2.4810 5.6416 -4.4066
10 6 3.3161 3.8254 -5.5936
11 1 3.5188 2.7646 -5.5922
12 6 3.7596 4.6217 -6.6569
13 7 3.5148 5.9053 -6.6584
14 14 4.7024 3.8490 -8.0724
15 1 4.8476 2.3907 -7.8328
16 1 3.9613 4.0706 -9.3401
17 1 6.0470 4.4715 -8.1699
18 6 1.3568 4.2352 -2.3663
19 6 1.9137 3.5493 -1.1143
20 6 2.1479 -0.9288 1.0584
21 6 2.0951 -2.0420 -0.0014
22 6 2.1461 -0.9280 -1.0603
23 1 -0.3634 0.4361 -0.9305
24 1 -0.3633 -1.0239 0.0875
25 1 -0.3634 0.5877 0.8430
26 1 3.2094 1.3469 0.0775
27 1 1.7312 1.9698 0.8488
28 1 3.5916 1.8518 -2.2506
29 1 2.4539 0.4925 -2.4181
30 1 0.9995 1.8269 -3.8651
31 1 2.6606 1.8945 -4.5104
32 1 3.8217 6.4568 -7.3950
33 1 0.2799 4.0761 -2.4226
34 1 1.5702 5.3033 -2.3243
35 1 1.3660 3.8933 -0.2370
36 1 2.9698 3.7956 -1.0040
37 1 3.1609 -0.6486 1.3473
38 1 1.4973 -1.1095 1.9141
39 1 1.1596 -2.6013 -0.0008
40 1 2.9745 -2.6859 -0.0024
41 1 1.4940 -1.1078 -1.9150
42 1 3.1580 -0.6467 -1.3518
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000565167060.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:40:35
Heat of formation + Delta-G solvation = -4.416545 kcal
Electronic energy + Delta-G solvation = -21219.804961 eV
Core-core repulsion = 18200.628428 eV
Total energy + Delta-G solvation = -3019.176533 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.05390 -38.27743 -36.20132 -33.25977 -32.46554 -30.64850 -29.83791 -27.56345
-26.24483 -25.84483 -24.53304 -22.93830 -21.88704 -20.53462 -18.74521 -18.28772
-16.64607 -15.80581 -15.53444 -15.28325 -14.95806 -14.52534 -14.26073 -13.97902
-13.82919 -13.37161 -13.26802 -12.78790 -12.46041 -12.24412 -12.16842 -11.63504
-11.57406 -11.38247 -11.22967 -11.11153 -10.96417 -10.88705 -10.69554 -10.60960
-10.49271 -10.20670 -10.03997 -9.92327 -9.71306 -8.86307 -8.05884 -7.56066
-7.14203 -6.19468 -4.63268 3.12524 3.20693 3.24698 4.01705 4.12014
4.52846 4.56543 4.60059 4.65363 4.71743 4.81407 5.16609 5.41837
5.48988 5.53910 5.55956 5.61907 5.64636 5.71020 5.75617 5.80184
5.85103 5.88045 5.92055 5.94674 6.01354 6.06116 6.13734 6.23302
6.32469 6.37097 6.51217 6.51978 6.58016 6.76756 7.36242 7.39785
7.46770 7.65602 8.15567 8.39405 9.03121 9.46995 10.58778 10.77298
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.028784 B = 0.004773 C = 0.004269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 972.533985 B = 5865.190767 C = 6557.601586
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.073 4.073
3 C 0.069 3.931
4 N -0.530 5.530
5 C 0.025 3.975
6 C 0.128 3.872
7 N -0.644 5.644
8 C 0.560 3.440
9 O -0.580 6.580
10 C -0.545 4.545
11 H 0.073 0.927
12 C 0.088 3.912
13 N -0.770 5.770
14 Si 0.905 3.095
15 H -0.263 1.263
16 H -0.276 1.276
17 H -0.276 1.276
18 C 0.127 3.873
19 C 0.045 3.955
20 C -0.134 4.134
21 C -0.143 4.143
22 C -0.134 4.134
23 H 0.069 0.931
24 H 0.047 0.953
25 H 0.051 0.949
26 H 0.031 0.969
27 H 0.068 0.932
28 H 0.031 0.969
29 H 0.091 0.909
30 H 0.048 0.952
31 H 0.093 0.907
32 H 0.268 0.732
33 H 0.048 0.952
34 H 0.083 0.917
35 H 0.071 0.929
36 H 0.031 0.969
37 H 0.077 0.923
38 H 0.064 0.936
39 H 0.077 0.923
40 H 0.062 0.938
41 H 0.071 0.929
42 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.832 -14.130 12.264 18.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.073 4.073
3 C -0.059 4.059
4 N -0.254 5.254
5 C -0.103 4.103
6 C 0.003 3.997
7 N -0.382 5.382
8 C 0.366 3.634
9 O -0.462 6.462
10 C -0.582 4.582
11 H 0.091 0.909
12 C -0.131 4.131
13 N -0.399 5.399
14 Si 0.730 3.270
15 H -0.187 1.187
16 H -0.201 1.201
17 H -0.202 1.202
18 C 0.002 3.998
19 C -0.084 4.084
20 C -0.172 4.172
21 C -0.180 4.180
22 C -0.171 4.171
23 H 0.088 0.912
24 H 0.066 0.934
25 H 0.070 0.930
26 H 0.049 0.951
27 H 0.086 0.914
28 H 0.049 0.951
29 H 0.109 0.891
30 H 0.066 0.934
31 H 0.111 0.889
32 H 0.078 0.922
33 H 0.066 0.934
34 H 0.101 0.899
35 H 0.089 0.911
36 H 0.049 0.951
37 H 0.095 0.905
38 H 0.083 0.917
39 H 0.096 0.904
40 H 0.081 0.919
41 H 0.090 0.910
42 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -3.356 -13.335 12.095 18.313
hybrid contribution 1.372 -0.261 -0.436 1.463
sum -1.984 -13.596 11.659 18.020
Atomic orbital electron populations
1.21425 0.92681 1.00561 1.02660 1.21775 0.96157 0.93093 0.96317
1.22050 0.97199 0.94124 0.92506 1.61877 1.56186 1.04024 1.03339
1.23001 0.94982 1.00502 0.91826 1.21490 1.00224 0.82048 0.95915
1.48237 1.61275 1.05250 1.23475 1.18262 0.78307 0.85761 0.81067
1.90583 1.64557 1.14456 1.76640 1.20988 1.37006 0.95341 1.04820
0.90937 1.25722 0.94489 0.94365 0.98567 1.70016 1.35777 1.05089
1.28976 0.86351 0.79513 0.80104 0.81019 1.18740 1.20136 1.20183
1.21185 0.95807 0.98275 0.84522 1.22529 0.99237 0.87580 0.99069
1.23003 1.00836 0.96624 0.96747 1.22838 1.01628 0.96405 0.97153
1.23108 1.01151 0.95884 0.96926 0.91160 0.93417 0.93000 0.95095
0.91379 0.95088 0.89079 0.93414 0.88901 0.92159 0.93372 0.89864
0.91069 0.95074 0.90470 0.91698 0.90391 0.91886 0.91012 0.89992
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.20 8.91 37.16 0.33 -0.87 16
2 C -0.07 -0.77 1.07 -153.70 -0.16 -0.93 16
3 C 0.07 0.86 4.52 -3.82 -0.02 0.84 16
4 N -0.53 -7.93 4.33 -234.32 -1.01 -8.95 16
5 C 0.03 0.40 5.11 -3.70 -0.02 0.38 16
6 C 0.13 2.46 6.52 -3.60 -0.02 2.44 16
7 N -0.64 -15.08 3.01 -174.12 -0.52 -15.60 16
8 C 0.56 16.23 7.61 -12.99 -0.10 16.13 16
9 O -0.58 -19.05 14.55 5.20 0.08 -18.97 16
10 C -0.54 -15.38 8.84 -35.63 -0.32 -15.70 16
11 H 0.07 1.87 5.74 -52.49 -0.30 1.57 16
12 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16
13 N -0.77 -23.21 11.86 55.55 0.66 -22.55 16
14 Si 0.91 20.11 29.56 -169.99 -5.02 15.08 16
15 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16
16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
18 C 0.13 2.58 6.58 -3.60 -0.02 2.55 16
19 C 0.04 0.74 5.59 -3.70 -0.02 0.72 16
20 C -0.13 -1.22 7.23 -25.92 -0.19 -1.40 16
21 C -0.14 -1.26 7.73 -25.92 -0.20 -1.46 16
22 C -0.13 -1.38 4.84 -25.92 -0.13 -1.50 16
23 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16
24 H 0.05 0.44 7.31 -51.93 -0.38 0.06 16
25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
26 H 0.03 0.39 7.97 -51.93 -0.41 -0.02 16
27 H 0.07 0.80 7.80 -51.93 -0.40 0.39 16
28 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16
29 H 0.09 1.24 3.82 -51.93 -0.20 1.04 16
30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16
31 H 0.09 1.85 5.39 -51.93 -0.28 1.57 16
32 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16
33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16
34 H 0.08 1.87 7.10 -51.93 -0.37 1.50 16
35 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16
36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16
38 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16
39 H 0.08 0.65 7.61 -51.93 -0.40 0.25 16
40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
41 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16
42 H 0.08 0.89 6.92 -51.93 -0.36 0.53 16
LS Contribution 321.40 15.07 4.84 4.84
Total: -1.00 -33.19 321.40 -8.79 -41.98
By element:
Atomic # 1 Polarization: 7.45 SS G_CDS: -6.84 Total: 0.60 kcal
Atomic # 6 Polarization: 4.52 SS G_CDS: -0.96 Total: 3.56 kcal
Atomic # 7 Polarization: -46.22 SS G_CDS: -0.88 Total: -47.10 kcal
Atomic # 8 Polarization: -19.05 SS G_CDS: 0.08 Total: -18.97 kcal
Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -33.19 -8.79 -41.98 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000565167060.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.562 kcal
(2) G-P(sol) polarization free energy of solvation -33.189 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds