Wall clock time and date at job start Mon Mar 30 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 112.84596 * 2 1 4 4 N 1.46897 * 109.47447 * 295.68288 * 3 2 1 5 5 C 1.46898 * 110.99968 * 285.57877 * 4 3 2 6 6 C 1.53235 * 109.34116 * 172.74748 * 5 4 3 7 7 N 1.47079 * 108.52337 * 53.82562 * 6 5 4 8 8 C 1.34779 * 120.88161 * 128.79303 * 7 6 5 9 9 O 1.21688 * 120.00099 * 174.84129 * 8 7 6 10 10 C 1.46375 * 119.99749 * 354.84223 * 8 7 6 11 11 H 1.07999 * 120.00334 * 351.60628 * 10 8 7 12 12 C 1.40049 * 119.99541 * 171.60366 * 10 8 7 13 13 N 1.30672 * 120.00456 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99801 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46852 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46770 * 120.00010 * 14 12 10 17 17 H 1.48491 * 109.47222 * 240.00203 * 14 12 10 18 18 C 1.47080 * 118.23910 * 308.82206 * 7 6 5 19 19 C 1.46903 * 110.99781 * 161.27585 * 4 3 2 20 20 C 1.53775 * 113.69243 * 131.26898 * 2 1 3 21 21 C 1.53785 * 87.08255 * 89.13022 * 20 2 1 22 22 C 1.53783 * 87.07944 * 25.43269 * 21 20 2 23 23 H 1.09002 * 109.47470 * 64.88761 * 1 2 3 24 24 H 1.09000 * 109.47067 * 184.88344 * 1 2 3 25 25 H 1.08997 * 109.47493 * 304.88259 * 1 2 3 26 26 H 1.08997 * 109.46697 * 175.67574 * 3 2 1 27 27 H 1.09003 * 109.47154 * 55.68365 * 3 2 1 28 28 H 1.09010 * 109.48883 * 292.70624 * 5 4 3 29 29 H 1.09001 * 109.49507 * 52.78419 * 5 4 3 30 30 H 1.08994 * 109.62706 * 294.11998 * 6 5 4 31 31 H 1.08999 * 109.62791 * 173.53883 * 6 5 4 32 32 H 0.97000 * 120.00561 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.62557 * 291.47106 * 18 7 6 34 34 H 1.09001 * 109.63177 * 170.89110 * 18 7 6 35 35 H 1.09001 * 109.48891 * 307.20879 * 19 4 3 36 36 H 1.08996 * 109.49600 * 67.29305 * 19 4 3 37 37 H 1.09000 * 113.61580 * 203.67978 * 20 2 1 38 38 H 1.09001 * 113.61502 * 334.58474 * 20 2 1 39 39 H 1.08996 * 113.61214 * 270.88886 * 21 20 2 40 40 H 1.08993 * 113.61496 * 139.98246 * 21 20 2 41 41 H 1.08993 * 113.61717 * 220.02259 * 22 21 20 42 42 H 1.08999 * 113.69232 * 89.12672 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 7 1.7611 2.0944 -1.2481 5 6 2.5443 1.5780 -2.3786 6 6 2.0132 2.1832 -3.6824 7 7 2.0054 3.6478 -3.5485 8 6 2.5779 4.4310 -4.4842 9 8 2.4810 5.6416 -4.4066 10 6 3.3161 3.8254 -5.5936 11 1 3.5188 2.7646 -5.5922 12 6 3.7596 4.6217 -6.6569 13 7 3.5148 5.9053 -6.6584 14 14 4.7024 3.8490 -8.0724 15 1 4.8476 2.3907 -7.8328 16 1 3.9613 4.0706 -9.3401 17 1 6.0470 4.4715 -8.1699 18 6 1.3568 4.2352 -2.3663 19 6 1.9137 3.5493 -1.1143 20 6 2.1479 -0.9288 1.0584 21 6 2.0951 -2.0420 -0.0014 22 6 2.1461 -0.9280 -1.0603 23 1 -0.3634 0.4361 -0.9305 24 1 -0.3633 -1.0239 0.0875 25 1 -0.3634 0.5877 0.8430 26 1 3.2094 1.3469 0.0775 27 1 1.7312 1.9698 0.8488 28 1 3.5916 1.8518 -2.2506 29 1 2.4539 0.4925 -2.4181 30 1 0.9995 1.8269 -3.8651 31 1 2.6606 1.8945 -4.5104 32 1 3.8217 6.4568 -7.3950 33 1 0.2799 4.0761 -2.4226 34 1 1.5702 5.3033 -2.3243 35 1 1.3660 3.8933 -0.2370 36 1 2.9698 3.7956 -1.0040 37 1 3.1609 -0.6486 1.3473 38 1 1.4973 -1.1095 1.9141 39 1 1.1596 -2.6013 -0.0008 40 1 2.9745 -2.6859 -0.0024 41 1 1.4940 -1.1078 -1.9150 42 1 3.1580 -0.6467 -1.3518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565167060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:35 Heat of formation + Delta-G solvation = -4.416545 kcal Electronic energy + Delta-G solvation = -21219.804961 eV Core-core repulsion = 18200.628428 eV Total energy + Delta-G solvation = -3019.176533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05390 -38.27743 -36.20132 -33.25977 -32.46554 -30.64850 -29.83791 -27.56345 -26.24483 -25.84483 -24.53304 -22.93830 -21.88704 -20.53462 -18.74521 -18.28772 -16.64607 -15.80581 -15.53444 -15.28325 -14.95806 -14.52534 -14.26073 -13.97902 -13.82919 -13.37161 -13.26802 -12.78790 -12.46041 -12.24412 -12.16842 -11.63504 -11.57406 -11.38247 -11.22967 -11.11153 -10.96417 -10.88705 -10.69554 -10.60960 -10.49271 -10.20670 -10.03997 -9.92327 -9.71306 -8.86307 -8.05884 -7.56066 -7.14203 -6.19468 -4.63268 3.12524 3.20693 3.24698 4.01705 4.12014 4.52846 4.56543 4.60059 4.65363 4.71743 4.81407 5.16609 5.41837 5.48988 5.53910 5.55956 5.61907 5.64636 5.71020 5.75617 5.80184 5.85103 5.88045 5.92055 5.94674 6.01354 6.06116 6.13734 6.23302 6.32469 6.37097 6.51217 6.51978 6.58016 6.76756 7.36242 7.39785 7.46770 7.65602 8.15567 8.39405 9.03121 9.46995 10.58778 10.77298 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028784 B = 0.004773 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.533985 B = 5865.190767 C = 6557.601586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C 0.069 3.931 4 N -0.530 5.530 5 C 0.025 3.975 6 C 0.128 3.872 7 N -0.644 5.644 8 C 0.560 3.440 9 O -0.580 6.580 10 C -0.545 4.545 11 H 0.073 0.927 12 C 0.088 3.912 13 N -0.770 5.770 14 Si 0.905 3.095 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 C 0.127 3.873 19 C 0.045 3.955 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.134 4.134 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.268 0.732 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -14.130 12.264 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.059 4.059 4 N -0.254 5.254 5 C -0.103 4.103 6 C 0.003 3.997 7 N -0.382 5.382 8 C 0.366 3.634 9 O -0.462 6.462 10 C -0.582 4.582 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.399 5.399 14 Si 0.730 3.270 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.202 1.202 18 C 0.002 3.998 19 C -0.084 4.084 20 C -0.172 4.172 21 C -0.180 4.180 22 C -0.171 4.171 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.356 -13.335 12.095 18.313 hybrid contribution 1.372 -0.261 -0.436 1.463 sum -1.984 -13.596 11.659 18.020 Atomic orbital electron populations 1.21425 0.92681 1.00561 1.02660 1.21775 0.96157 0.93093 0.96317 1.22050 0.97199 0.94124 0.92506 1.61877 1.56186 1.04024 1.03339 1.23001 0.94982 1.00502 0.91826 1.21490 1.00224 0.82048 0.95915 1.48237 1.61275 1.05250 1.23475 1.18262 0.78307 0.85761 0.81067 1.90583 1.64557 1.14456 1.76640 1.20988 1.37006 0.95341 1.04820 0.90937 1.25722 0.94489 0.94365 0.98567 1.70016 1.35777 1.05089 1.28976 0.86351 0.79513 0.80104 0.81019 1.18740 1.20136 1.20183 1.21185 0.95807 0.98275 0.84522 1.22529 0.99237 0.87580 0.99069 1.23003 1.00836 0.96624 0.96747 1.22838 1.01628 0.96405 0.97153 1.23108 1.01151 0.95884 0.96926 0.91160 0.93417 0.93000 0.95095 0.91379 0.95088 0.89079 0.93414 0.88901 0.92159 0.93372 0.89864 0.91069 0.95074 0.90470 0.91698 0.90391 0.91886 0.91012 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.91 37.16 0.33 -0.87 16 2 C -0.07 -0.77 1.07 -153.70 -0.16 -0.93 16 3 C 0.07 0.86 4.52 -3.82 -0.02 0.84 16 4 N -0.53 -7.93 4.33 -234.32 -1.01 -8.95 16 5 C 0.03 0.40 5.11 -3.70 -0.02 0.38 16 6 C 0.13 2.46 6.52 -3.60 -0.02 2.44 16 7 N -0.64 -15.08 3.01 -174.12 -0.52 -15.60 16 8 C 0.56 16.23 7.61 -12.99 -0.10 16.13 16 9 O -0.58 -19.05 14.55 5.20 0.08 -18.97 16 10 C -0.54 -15.38 8.84 -35.63 -0.32 -15.70 16 11 H 0.07 1.87 5.74 -52.49 -0.30 1.57 16 12 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 13 N -0.77 -23.21 11.86 55.55 0.66 -22.55 16 14 Si 0.91 20.11 29.56 -169.99 -5.02 15.08 16 15 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.13 2.58 6.58 -3.60 -0.02 2.55 16 19 C 0.04 0.74 5.59 -3.70 -0.02 0.72 16 20 C -0.13 -1.22 7.23 -25.92 -0.19 -1.40 16 21 C -0.14 -1.26 7.73 -25.92 -0.20 -1.46 16 22 C -0.13 -1.38 4.84 -25.92 -0.13 -1.50 16 23 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 24 H 0.05 0.44 7.31 -51.93 -0.38 0.06 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.03 0.39 7.97 -51.93 -0.41 -0.02 16 27 H 0.07 0.80 7.80 -51.93 -0.40 0.39 16 28 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.09 1.24 3.82 -51.93 -0.20 1.04 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.85 5.39 -51.93 -0.28 1.57 16 32 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.87 7.10 -51.93 -0.37 1.50 16 35 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 38 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 39 H 0.08 0.65 7.61 -51.93 -0.40 0.25 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16 42 H 0.08 0.89 6.92 -51.93 -0.36 0.53 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -33.19 321.40 -8.79 -41.98 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.84 Total: 0.60 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.96 Total: 3.56 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.88 Total: -47.10 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.19 -8.79 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565167060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.562 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds