Wall clock time and date at job start Mon Mar 30 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 112.84596 * 2 1 4 4 N 1.46897 * 109.47447 * 295.68288 * 3 2 1 5 5 C 1.46898 * 110.99968 * 285.57877 * 4 3 2 6 6 C 1.53235 * 109.34116 * 172.74748 * 5 4 3 7 7 N 1.47079 * 108.52337 * 53.82562 * 6 5 4 8 8 C 1.34779 * 120.88161 * 128.79303 * 7 6 5 9 9 O 1.21688 * 120.00099 * 174.84129 * 8 7 6 10 10 C 1.46375 * 119.99749 * 354.84223 * 8 7 6 11 11 H 1.07999 * 120.00334 * 351.60628 * 10 8 7 12 12 C 1.40049 * 119.99541 * 171.60366 * 10 8 7 13 13 N 1.30672 * 120.00456 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99801 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46852 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46770 * 120.00010 * 14 12 10 17 17 H 1.48491 * 109.47222 * 240.00203 * 14 12 10 18 18 C 1.47080 * 118.23910 * 308.82206 * 7 6 5 19 19 C 1.46903 * 110.99781 * 161.27585 * 4 3 2 20 20 C 1.53775 * 113.69243 * 131.26898 * 2 1 3 21 21 C 1.53785 * 87.08255 * 89.13022 * 20 2 1 22 22 C 1.53783 * 87.07944 * 25.43269 * 21 20 2 23 23 H 1.09002 * 109.47470 * 64.88761 * 1 2 3 24 24 H 1.09000 * 109.47067 * 184.88344 * 1 2 3 25 25 H 1.08997 * 109.47493 * 304.88259 * 1 2 3 26 26 H 1.08997 * 109.46697 * 175.67574 * 3 2 1 27 27 H 1.09003 * 109.47154 * 55.68365 * 3 2 1 28 28 H 1.09010 * 109.48883 * 292.70624 * 5 4 3 29 29 H 1.09001 * 109.49507 * 52.78419 * 5 4 3 30 30 H 1.08994 * 109.62706 * 294.11998 * 6 5 4 31 31 H 1.08999 * 109.62791 * 173.53883 * 6 5 4 32 32 H 0.97000 * 120.00561 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.62557 * 291.47106 * 18 7 6 34 34 H 1.09001 * 109.63177 * 170.89110 * 18 7 6 35 35 H 1.09001 * 109.48891 * 307.20879 * 19 4 3 36 36 H 1.08996 * 109.49600 * 67.29305 * 19 4 3 37 37 H 1.09000 * 113.61580 * 203.67978 * 20 2 1 38 38 H 1.09001 * 113.61502 * 334.58474 * 20 2 1 39 39 H 1.08996 * 113.61214 * 270.88886 * 21 20 2 40 40 H 1.08993 * 113.61496 * 139.98246 * 21 20 2 41 41 H 1.08993 * 113.61717 * 220.02259 * 22 21 20 42 42 H 1.08999 * 113.69232 * 89.12672 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 7 1.7611 2.0944 -1.2481 5 6 2.5443 1.5780 -2.3786 6 6 2.0132 2.1832 -3.6824 7 7 2.0054 3.6478 -3.5485 8 6 2.5779 4.4310 -4.4842 9 8 2.4810 5.6416 -4.4066 10 6 3.3161 3.8254 -5.5936 11 1 3.5188 2.7646 -5.5922 12 6 3.7596 4.6217 -6.6569 13 7 3.5148 5.9053 -6.6584 14 14 4.7024 3.8490 -8.0724 15 1 4.8476 2.3907 -7.8328 16 1 3.9613 4.0706 -9.3401 17 1 6.0470 4.4715 -8.1699 18 6 1.3568 4.2352 -2.3663 19 6 1.9137 3.5493 -1.1143 20 6 2.1479 -0.9288 1.0584 21 6 2.0951 -2.0420 -0.0014 22 6 2.1461 -0.9280 -1.0603 23 1 -0.3634 0.4361 -0.9305 24 1 -0.3633 -1.0239 0.0875 25 1 -0.3634 0.5877 0.8430 26 1 3.2094 1.3469 0.0775 27 1 1.7312 1.9698 0.8488 28 1 3.5916 1.8518 -2.2506 29 1 2.4539 0.4925 -2.4181 30 1 0.9995 1.8269 -3.8651 31 1 2.6606 1.8945 -4.5104 32 1 3.8217 6.4568 -7.3950 33 1 0.2799 4.0761 -2.4226 34 1 1.5702 5.3033 -2.3243 35 1 1.3660 3.8933 -0.2370 36 1 2.9698 3.7956 -1.0040 37 1 3.1609 -0.6486 1.3473 38 1 1.4973 -1.1095 1.9141 39 1 1.1596 -2.6013 -0.0008 40 1 2.9745 -2.6859 -0.0024 41 1 1.4940 -1.1078 -1.9150 42 1 3.1580 -0.6467 -1.3518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565167060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:34 Heat of formation + Delta-G solvation = -26.712581 kcal Electronic energy + Delta-G solvation = -21220.771790 eV Core-core repulsion = 18200.628428 eV Total energy + Delta-G solvation = -3020.143362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07437 -39.86781 -37.94191 -34.99345 -34.58458 -32.17901 -30.85927 -29.03077 -27.98996 -26.68440 -25.85255 -24.37886 -23.10757 -22.03189 -20.49898 -19.12818 -18.51382 -17.80724 -16.53771 -16.47850 -16.26039 -16.01073 -15.85731 -15.58509 -15.36880 -14.60697 -14.45385 -14.24323 -13.90871 -13.45324 -13.26283 -13.03300 -12.98123 -12.83684 -12.77047 -12.61599 -12.38460 -12.21172 -12.10435 -11.96672 -11.94530 -11.65292 -11.27434 -10.96367 -10.84468 -10.71940 -9.80076 -9.39529 -8.99619 -8.30709 -6.84909 1.39082 1.39253 1.57198 2.22851 2.44693 2.72128 3.01366 3.57905 3.70970 3.78680 3.89742 4.03008 4.09107 4.13498 4.23242 4.36436 4.42311 4.45214 4.65521 4.69235 4.76355 4.81301 4.87014 4.90458 4.93514 4.95925 4.97807 5.07146 5.12353 5.16809 5.19799 5.28369 5.37684 5.41008 5.58707 5.71843 5.73506 6.06586 6.14731 6.17377 6.41591 6.86831 7.41507 8.44887 8.66117 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028784 B = 0.004773 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.533985 B = 5865.190767 C = 6557.601586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 C 0.070 3.930 4 N -0.527 5.527 5 C 0.037 3.963 6 C 0.124 3.876 7 N -0.648 5.648 8 C 0.540 3.460 9 O -0.635 6.635 10 C -0.569 4.569 11 H 0.093 0.907 12 C 0.029 3.971 13 N -0.825 5.825 14 Si 0.996 3.004 15 H -0.244 1.244 16 H -0.267 1.267 17 H -0.270 1.270 18 C 0.124 3.876 19 C 0.057 3.943 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.141 4.141 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.014 0.986 29 H 0.121 0.879 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.274 0.726 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.014 0.986 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -17.199 12.913 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.075 4.075 3 C -0.058 4.058 4 N -0.252 5.252 5 C -0.091 4.091 6 C 0.001 3.999 7 N -0.384 5.384 8 C 0.346 3.654 9 O -0.522 6.522 10 C -0.605 4.605 11 H 0.111 0.889 12 C -0.186 4.186 13 N -0.455 5.455 14 Si 0.815 3.185 15 H -0.167 1.167 16 H -0.192 1.192 17 H -0.195 1.195 18 C 0.000 4.000 19 C -0.071 4.071 20 C -0.165 4.165 21 C -0.172 4.172 22 C -0.179 4.179 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.033 0.967 29 H 0.139 0.861 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.032 0.968 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.173 -16.469 12.797 21.097 hybrid contribution 1.235 0.685 -0.557 1.518 sum -1.938 -15.785 12.241 20.069 Atomic orbital electron populations 1.21383 0.92381 1.01341 1.01849 1.21812 0.96334 0.91960 0.97440 1.22155 0.97331 0.95143 0.91144 1.61889 1.55888 1.02971 1.04429 1.22899 0.93787 1.01849 0.90559 1.21672 1.00947 0.79563 0.97715 1.48148 1.60229 1.06846 1.23223 1.18715 0.78768 0.85567 0.82325 1.90527 1.66668 1.16776 1.78250 1.21500 1.37290 0.96575 1.05152 0.88886 1.27007 0.95085 0.94658 1.01855 1.70190 1.37359 1.07364 1.30566 0.84996 0.77491 0.79790 0.76193 1.16660 1.19205 1.19530 1.21292 0.96386 0.97032 0.85285 1.22362 0.98277 0.88626 0.97882 1.22973 1.00964 0.95843 0.96761 1.22805 1.02436 0.96053 0.95889 1.23128 1.00641 0.96860 0.97240 0.92943 0.92091 0.92614 0.95304 0.90332 0.96728 0.86145 0.92212 0.89773 0.91607 0.92308 0.92904 0.88032 0.96808 0.90334 0.90636 0.89532 0.91189 0.91339 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 8.91 71.98 0.64 -1.37 16 2 C -0.07 -1.36 1.07 -51.65 -0.06 -1.42 16 3 C 0.07 1.55 4.52 86.30 0.39 1.94 16 4 N -0.53 -14.96 4.33 -895.24 -3.88 -18.84 16 5 C 0.04 1.15 5.11 86.38 0.44 1.59 16 6 C 0.12 4.74 6.52 86.35 0.56 5.30 16 7 N -0.65 -31.13 3.01 -823.03 -2.48 -33.61 16 8 C 0.54 32.57 7.61 86.36 0.66 33.23 16 9 O -0.63 -44.06 14.55 -4.31 -0.06 -44.12 16 10 C -0.57 -32.73 8.84 24.83 0.22 -32.51 16 11 H 0.09 4.78 5.74 -2.91 -0.02 4.77 16 12 C 0.03 1.62 5.50 85.30 0.47 2.09 16 13 N -0.83 -51.44 11.86 21.84 0.26 -51.18 16 14 Si 1.00 41.23 29.56 68.60 2.03 43.26 16 15 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16 16 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 18 C 0.12 5.17 6.58 86.35 0.57 5.74 16 19 C 0.06 1.87 5.59 86.38 0.48 2.35 16 20 C -0.13 -1.89 7.23 31.12 0.22 -1.66 16 21 C -0.13 -1.93 7.73 31.12 0.24 -1.69 16 22 C -0.14 -2.54 4.84 31.12 0.15 -2.39 16 23 H 0.05 1.13 8.07 -2.39 -0.02 1.11 16 24 H 0.06 0.93 7.31 -2.39 -0.02 0.91 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.03 0.67 7.97 -2.39 -0.02 0.65 16 27 H 0.08 1.61 7.80 -2.39 -0.02 1.60 16 28 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.12 3.02 3.82 -2.39 -0.01 3.01 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 3.33 5.39 -2.39 -0.01 3.32 16 32 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 33 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.05 2.51 7.10 -2.39 -0.02 2.49 16 35 H 0.10 2.70 7.91 -2.39 -0.02 2.68 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 37 H 0.08 1.16 8.06 -2.39 -0.02 1.15 16 38 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.09 1.12 7.61 -2.39 -0.02 1.10 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.28 7.77 -2.39 -0.02 1.26 16 42 H 0.08 1.46 6.92 -2.39 -0.02 1.45 16 Total: -1.00 -75.36 321.40 1.86 -73.50 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.99 Total: 19.77 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.99 Total: 11.21 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -6.10 Total: -103.62 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.06 Total: -44.12 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -75.36 1.86 -73.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565167060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.790 kcal (2) G-P(sol) polarization free energy of solvation -75.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds