Wall clock time and date at job start Mon Mar 30 2020 05:40:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 112.84596 * 2 1
4 4 N 1.46897 * 109.47447 * 295.68288 * 3 2 1
5 5 C 1.46898 * 110.99968 * 285.57877 * 4 3 2
6 6 C 1.53235 * 109.34116 * 172.74748 * 5 4 3
7 7 N 1.47079 * 108.52337 * 53.82562 * 6 5 4
8 8 C 1.34779 * 120.88161 * 128.79303 * 7 6 5
9 9 O 1.21688 * 120.00099 * 174.84129 * 8 7 6
10 10 C 1.46375 * 119.99749 * 354.84223 * 8 7 6
11 11 H 1.07999 * 120.00334 * 351.60628 * 10 8 7
12 12 C 1.40049 * 119.99541 * 171.60366 * 10 8 7
13 13 N 1.30672 * 120.00456 * 0.02562 * 12 10 8
14 14 Si 1.86806 * 119.99801 * 179.97438 * 12 10 8
15 15 H 1.48500 * 109.46852 * 0.02562 * 14 12 10
16 16 H 1.48504 * 109.46770 * 120.00010 * 14 12 10
17 17 H 1.48491 * 109.47222 * 240.00203 * 14 12 10
18 18 C 1.47080 * 118.23910 * 308.82206 * 7 6 5
19 19 C 1.46903 * 110.99781 * 161.27585 * 4 3 2
20 20 C 1.53775 * 113.69243 * 131.26898 * 2 1 3
21 21 C 1.53785 * 87.08255 * 89.13022 * 20 2 1
22 22 C 1.53783 * 87.07944 * 25.43269 * 21 20 2
23 23 H 1.09002 * 109.47470 * 64.88761 * 1 2 3
24 24 H 1.09000 * 109.47067 * 184.88344 * 1 2 3
25 25 H 1.08997 * 109.47493 * 304.88259 * 1 2 3
26 26 H 1.08997 * 109.46697 * 175.67574 * 3 2 1
27 27 H 1.09003 * 109.47154 * 55.68365 * 3 2 1
28 28 H 1.09010 * 109.48883 * 292.70624 * 5 4 3
29 29 H 1.09001 * 109.49507 * 52.78419 * 5 4 3
30 30 H 1.08994 * 109.62706 * 294.11998 * 6 5 4
31 31 H 1.08999 * 109.62791 * 173.53883 * 6 5 4
32 32 H 0.97000 * 120.00561 * 180.02562 * 13 12 10
33 33 H 1.09005 * 109.62557 * 291.47106 * 18 7 6
34 34 H 1.09001 * 109.63177 * 170.89110 * 18 7 6
35 35 H 1.09001 * 109.48891 * 307.20879 * 19 4 3
36 36 H 1.08996 * 109.49600 * 67.29305 * 19 4 3
37 37 H 1.09000 * 113.61580 * 203.67978 * 20 2 1
38 38 H 1.09001 * 113.61502 * 334.58474 * 20 2 1
39 39 H 1.08996 * 113.61214 * 270.88886 * 21 20 2
40 40 H 1.08993 * 113.61496 * 139.98246 * 21 20 2
41 41 H 1.08993 * 113.61717 * 220.02259 * 22 21 20
42 42 H 1.08999 * 113.69232 * 89.12672 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1241 1.4100 0.0000
4 7 1.7611 2.0944 -1.2481
5 6 2.5443 1.5780 -2.3786
6 6 2.0132 2.1832 -3.6824
7 7 2.0054 3.6478 -3.5485
8 6 2.5779 4.4310 -4.4842
9 8 2.4810 5.6416 -4.4066
10 6 3.3161 3.8254 -5.5936
11 1 3.5188 2.7646 -5.5922
12 6 3.7596 4.6217 -6.6569
13 7 3.5148 5.9053 -6.6584
14 14 4.7024 3.8490 -8.0724
15 1 4.8476 2.3907 -7.8328
16 1 3.9613 4.0706 -9.3401
17 1 6.0470 4.4715 -8.1699
18 6 1.3568 4.2352 -2.3663
19 6 1.9137 3.5493 -1.1143
20 6 2.1479 -0.9288 1.0584
21 6 2.0951 -2.0420 -0.0014
22 6 2.1461 -0.9280 -1.0603
23 1 -0.3634 0.4361 -0.9305
24 1 -0.3633 -1.0239 0.0875
25 1 -0.3634 0.5877 0.8430
26 1 3.2094 1.3469 0.0775
27 1 1.7312 1.9698 0.8488
28 1 3.5916 1.8518 -2.2506
29 1 2.4539 0.4925 -2.4181
30 1 0.9995 1.8269 -3.8651
31 1 2.6606 1.8945 -4.5104
32 1 3.8217 6.4568 -7.3950
33 1 0.2799 4.0761 -2.4226
34 1 1.5702 5.3033 -2.3243
35 1 1.3660 3.8933 -0.2370
36 1 2.9698 3.7956 -1.0040
37 1 3.1609 -0.6486 1.3473
38 1 1.4973 -1.1095 1.9141
39 1 1.1596 -2.6013 -0.0008
40 1 2.9745 -2.6859 -0.0024
41 1 1.4940 -1.1078 -1.9150
42 1 3.1580 -0.6467 -1.3518
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000565167060.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:40:34
Heat of formation + Delta-G solvation = -26.712581 kcal
Electronic energy + Delta-G solvation = -21220.771790 eV
Core-core repulsion = 18200.628428 eV
Total energy + Delta-G solvation = -3020.143362 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.07437 -39.86781 -37.94191 -34.99345 -34.58458 -32.17901 -30.85927 -29.03077
-27.98996 -26.68440 -25.85255 -24.37886 -23.10757 -22.03189 -20.49898 -19.12818
-18.51382 -17.80724 -16.53771 -16.47850 -16.26039 -16.01073 -15.85731 -15.58509
-15.36880 -14.60697 -14.45385 -14.24323 -13.90871 -13.45324 -13.26283 -13.03300
-12.98123 -12.83684 -12.77047 -12.61599 -12.38460 -12.21172 -12.10435 -11.96672
-11.94530 -11.65292 -11.27434 -10.96367 -10.84468 -10.71940 -9.80076 -9.39529
-8.99619 -8.30709 -6.84909 1.39082 1.39253 1.57198 2.22851 2.44693
2.72128 3.01366 3.57905 3.70970 3.78680 3.89742 4.03008 4.09107
4.13498 4.23242 4.36436 4.42311 4.45214 4.65521 4.69235 4.76355
4.81301 4.87014 4.90458 4.93514 4.95925 4.97807 5.07146 5.12353
5.16809 5.19799 5.28369 5.37684 5.41008 5.58707 5.71843 5.73506
6.06586 6.14731 6.17377 6.41591 6.86831 7.41507 8.44887 8.66117
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.028784 B = 0.004773 C = 0.004269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 972.533985 B = 5865.190767 C = 6557.601586
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.075 4.075
3 C 0.070 3.930
4 N -0.527 5.527
5 C 0.037 3.963
6 C 0.124 3.876
7 N -0.648 5.648
8 C 0.540 3.460
9 O -0.635 6.635
10 C -0.569 4.569
11 H 0.093 0.907
12 C 0.029 3.971
13 N -0.825 5.825
14 Si 0.996 3.004
15 H -0.244 1.244
16 H -0.267 1.267
17 H -0.270 1.270
18 C 0.124 3.876
19 C 0.057 3.943
20 C -0.127 4.127
21 C -0.135 4.135
22 C -0.141 4.141
23 H 0.051 0.949
24 H 0.060 0.940
25 H 0.055 0.945
26 H 0.029 0.971
27 H 0.078 0.922
28 H 0.014 0.986
29 H 0.121 0.879
30 H 0.060 0.940
31 H 0.084 0.916
32 H 0.274 0.726
33 H 0.059 0.941
34 H 0.052 0.948
35 H 0.102 0.898
36 H 0.014 0.986
37 H 0.078 0.922
38 H 0.075 0.925
39 H 0.086 0.914
40 H 0.069 0.931
41 H 0.068 0.932
42 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.626 -17.199 12.913 21.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.075 4.075
3 C -0.058 4.058
4 N -0.252 5.252
5 C -0.091 4.091
6 C 0.001 3.999
7 N -0.384 5.384
8 C 0.346 3.654
9 O -0.522 6.522
10 C -0.605 4.605
11 H 0.111 0.889
12 C -0.186 4.186
13 N -0.455 5.455
14 Si 0.815 3.185
15 H -0.167 1.167
16 H -0.192 1.192
17 H -0.195 1.195
18 C 0.000 4.000
19 C -0.071 4.071
20 C -0.165 4.165
21 C -0.172 4.172
22 C -0.179 4.179
23 H 0.071 0.929
24 H 0.079 0.921
25 H 0.074 0.926
26 H 0.047 0.953
27 H 0.097 0.903
28 H 0.033 0.967
29 H 0.139 0.861
30 H 0.078 0.922
31 H 0.102 0.898
32 H 0.084 0.916
33 H 0.077 0.923
34 H 0.071 0.929
35 H 0.120 0.880
36 H 0.032 0.968
37 H 0.097 0.903
38 H 0.094 0.906
39 H 0.105 0.895
40 H 0.088 0.912
41 H 0.087 0.913
42 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -3.173 -16.469 12.797 21.097
hybrid contribution 1.235 0.685 -0.557 1.518
sum -1.938 -15.785 12.241 20.069
Atomic orbital electron populations
1.21383 0.92381 1.01341 1.01849 1.21812 0.96334 0.91960 0.97440
1.22155 0.97331 0.95143 0.91144 1.61889 1.55888 1.02971 1.04429
1.22899 0.93787 1.01849 0.90559 1.21672 1.00947 0.79563 0.97715
1.48148 1.60229 1.06846 1.23223 1.18715 0.78768 0.85567 0.82325
1.90527 1.66668 1.16776 1.78250 1.21500 1.37290 0.96575 1.05152
0.88886 1.27007 0.95085 0.94658 1.01855 1.70190 1.37359 1.07364
1.30566 0.84996 0.77491 0.79790 0.76193 1.16660 1.19205 1.19530
1.21292 0.96386 0.97032 0.85285 1.22362 0.98277 0.88626 0.97882
1.22973 1.00964 0.95843 0.96761 1.22805 1.02436 0.96053 0.95889
1.23128 1.00641 0.96860 0.97240 0.92943 0.92091 0.92614 0.95304
0.90332 0.96728 0.86145 0.92212 0.89773 0.91607 0.92308 0.92904
0.88032 0.96808 0.90334 0.90636 0.89532 0.91189 0.91339 0.90601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.01 8.91 71.98 0.64 -1.37 16
2 C -0.07 -1.36 1.07 -51.65 -0.06 -1.42 16
3 C 0.07 1.55 4.52 86.30 0.39 1.94 16
4 N -0.53 -14.96 4.33 -895.24 -3.88 -18.84 16
5 C 0.04 1.15 5.11 86.38 0.44 1.59 16
6 C 0.12 4.74 6.52 86.35 0.56 5.30 16
7 N -0.65 -31.13 3.01 -823.03 -2.48 -33.61 16
8 C 0.54 32.57 7.61 86.36 0.66 33.23 16
9 O -0.63 -44.06 14.55 -4.31 -0.06 -44.12 16
10 C -0.57 -32.73 8.84 24.83 0.22 -32.51 16
11 H 0.09 4.78 5.74 -2.91 -0.02 4.77 16
12 C 0.03 1.62 5.50 85.30 0.47 2.09 16
13 N -0.83 -51.44 11.86 21.84 0.26 -51.18 16
14 Si 1.00 41.23 29.56 68.60 2.03 43.26 16
15 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16
16 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16
17 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16
18 C 0.12 5.17 6.58 86.35 0.57 5.74 16
19 C 0.06 1.87 5.59 86.38 0.48 2.35 16
20 C -0.13 -1.89 7.23 31.12 0.22 -1.66 16
21 C -0.13 -1.93 7.73 31.12 0.24 -1.69 16
22 C -0.14 -2.54 4.84 31.12 0.15 -2.39 16
23 H 0.05 1.13 8.07 -2.39 -0.02 1.11 16
24 H 0.06 0.93 7.31 -2.39 -0.02 0.91 16
25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16
26 H 0.03 0.67 7.97 -2.39 -0.02 0.65 16
27 H 0.08 1.61 7.80 -2.39 -0.02 1.60 16
28 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16
29 H 0.12 3.02 3.82 -2.39 -0.01 3.01 16
30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16
31 H 0.08 3.33 5.39 -2.39 -0.01 3.32 16
32 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16
33 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16
34 H 0.05 2.51 7.10 -2.39 -0.02 2.49 16
35 H 0.10 2.70 7.91 -2.39 -0.02 2.68 16
36 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16
37 H 0.08 1.16 8.06 -2.39 -0.02 1.15 16
38 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16
39 H 0.09 1.12 7.61 -2.39 -0.02 1.10 16
40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
41 H 0.07 1.28 7.77 -2.39 -0.02 1.26 16
42 H 0.08 1.46 6.92 -2.39 -0.02 1.45 16
Total: -1.00 -75.36 321.40 1.86 -73.50
By element:
Atomic # 1 Polarization: 18.78 SS G_CDS: 0.99 Total: 19.77 kcal
Atomic # 6 Polarization: 6.21 SS G_CDS: 4.99 Total: 11.21 kcal
Atomic # 7 Polarization: -97.53 SS G_CDS: -6.10 Total: -103.62 kcal
Atomic # 8 Polarization: -44.06 SS G_CDS: -0.06 Total: -44.12 kcal
Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal
Total: -75.36 1.86 -73.50 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000565167060.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.790 kcal
(2) G-P(sol) polarization free energy of solvation -75.361 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.570 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds