Wall clock time and date at job start Mon Mar 30 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 113.38698 * 2 1 4 4 C 1.53517 * 114.16970 * 133.07672 * 2 1 3 5 5 N 1.47475 * 87.93352 * 139.66952 * 4 2 1 6 6 C 1.46900 * 111.00263 * 221.29624 * 5 4 2 7 7 C 1.50700 * 109.47139 * 169.99970 * 6 5 4 8 8 O 1.21276 * 119.99954 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 187.12943 * 14 12 11 17 17 H 1.48503 * 109.47001 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47286 * 300.00629 * 16 14 12 19 19 H 1.48507 * 109.46736 * 60.00434 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 C 1.47477 * 87.83969 * 332.99100 * 5 4 2 23 23 H 1.08995 * 109.47286 * 286.92641 * 1 2 3 24 24 H 1.08999 * 109.46749 * 46.92232 * 1 2 3 25 25 H 1.08999 * 109.47305 * 166.92186 * 1 2 3 26 26 H 1.09001 * 109.47510 * 193.07900 * 3 2 1 27 27 H 1.09003 * 109.47319 * 313.07892 * 3 2 1 28 28 H 1.09000 * 109.47403 * 73.07154 * 3 2 1 29 29 H 1.09006 * 113.47371 * 24.90205 * 4 2 1 30 30 H 1.08998 * 113.53407 * 254.44854 * 4 2 1 31 31 H 1.09005 * 109.46828 * 50.00258 * 6 5 4 32 32 H 1.08995 * 109.47092 * 290.00256 * 6 5 4 33 33 H 0.97003 * 119.99966 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 35 35 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 36 36 H 0.97004 * 120.00131 * 355.39941 * 15 14 12 37 37 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 38 38 H 1.08997 * 117.50012 * 0.02562 * 20 11 10 39 39 H 1.09003 * 117.50343 * 359.97438 * 21 11 10 40 40 H 1.08997 * 117.49643 * 144.97660 * 21 11 10 41 41 H 1.08996 * 113.47998 * 141.77117 * 22 5 4 42 42 H 1.09000 * 113.47760 * 272.24294 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1373 1.4042 0.0000 4 6 2.1585 -0.9566 1.0231 5 7 3.1618 -1.3060 0.0002 6 6 3.4330 -2.7497 0.0002 7 6 4.2660 -3.1044 -1.2045 8 8 4.6012 -2.2396 -1.9859 9 7 4.6385 -4.3827 -1.4135 10 6 5.4488 -4.7275 -2.5844 11 6 5.6327 -6.2450 -2.6483 12 6 6.3616 -6.8611 -1.4821 13 1 5.8044 -7.2757 -0.6550 14 6 7.7400 -6.8957 -1.4710 15 7 8.4209 -6.2692 -2.4056 16 14 8.6400 -7.8321 -0.1284 17 1 10.1052 -7.7149 -0.3403 18 1 8.2847 -7.2623 1.1960 19 1 8.2457 -9.2631 -0.1736 20 6 4.5155 -7.0654 -3.2963 21 6 5.8468 -6.8732 -4.0269 22 6 2.1586 -0.9567 -1.0229 23 1 -0.3633 0.2992 0.9831 24 1 -0.3633 0.7019 -0.7506 25 1 -0.3634 -1.0010 -0.2325 26 1 3.2003 1.3404 -0.2326 27 1 1.6372 2.0164 -0.7506 28 1 2.0068 1.8565 0.9831 29 1 1.5089 -1.7883 1.2961 30 1 2.5812 -0.4496 1.8905 31 1 2.4906 -3.2964 -0.0359 32 1 3.9739 -3.0177 0.9077 33 1 4.3707 -5.0743 -0.7883 34 1 6.4236 -4.2463 -2.5060 35 1 4.9456 -4.3840 -3.4882 36 1 7.9548 -5.8393 -3.1396 37 1 4.3078 -8.0507 -2.8790 38 1 3.6497 -6.5240 -3.6774 39 1 5.8562 -6.2054 -4.8884 40 1 6.5152 -7.7318 -4.0904 41 1 2.5811 -0.4488 -1.8898 42 1 1.5091 -1.7884 -1.2959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569824863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:12 Heat of formation + Delta-G solvation = 11.141063 kcal Electronic energy + Delta-G solvation = -20493.589222 eV Core-core repulsion = 17475.087317 eV Total energy + Delta-G solvation = -3018.501905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74719 -38.75102 -36.92988 -33.34884 -33.17957 -31.93965 -28.73610 -27.56811 -26.04352 -25.96048 -24.82303 -22.59928 -21.38092 -19.83679 -19.50045 -18.53136 -17.06556 -16.41118 -15.91474 -15.70927 -14.90382 -14.69760 -14.54934 -13.87301 -13.77622 -13.52037 -13.29422 -12.93381 -12.73287 -12.69044 -12.31337 -12.17928 -12.03464 -11.71044 -11.45500 -11.19822 -10.96716 -10.83008 -10.64818 -10.52321 -10.24991 -10.16150 -9.74773 -9.33950 -8.85935 -8.70174 -8.50196 -8.41796 -8.19423 -6.41849 -4.18243 3.16350 3.38927 3.39841 3.58429 3.59055 4.05517 4.21692 4.45455 4.58480 4.96186 4.98326 5.02735 5.16832 5.23896 5.26545 5.33480 5.40107 5.44990 5.52639 5.56145 5.71351 5.76630 5.81182 5.89351 5.95662 5.99983 6.11741 6.21119 6.25257 6.30885 6.36973 6.49995 6.64843 6.82728 6.95394 7.13464 7.16810 7.25948 8.14094 8.23269 8.31332 8.78976 8.84449 9.58321 10.97495 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028154 B = 0.004059 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.273928 B = 6895.811220 C = 7309.050387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.121 4.121 4 C 0.002 3.998 5 N -0.446 5.446 6 C 0.000 4.000 7 C 0.506 3.494 8 O -0.541 6.541 9 N -0.703 5.703 10 C 0.161 3.839 11 C 0.006 3.994 12 C -0.578 4.578 13 H 0.053 0.947 14 C 0.030 3.970 15 N -0.898 5.898 16 Si 1.067 2.933 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.194 4.194 21 C -0.172 4.172 22 C 0.014 3.986 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.401 0.599 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.276 0.724 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.712 8.399 5.871 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.178 4.178 4 C -0.127 4.127 5 N -0.168 5.168 6 C -0.132 4.132 7 C 0.290 3.710 8 O -0.418 6.418 9 N -0.353 5.353 10 C 0.037 3.963 11 C 0.005 3.995 12 C -0.616 4.616 13 H 0.071 0.929 14 C -0.177 4.177 15 N -0.532 5.532 16 Si 0.895 3.105 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.231 4.231 21 C -0.211 4.211 22 C -0.115 4.115 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.235 0.765 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.229 8.936 5.868 16.243 hybrid contribution -2.359 -0.741 -0.316 2.492 sum -14.587 8.195 5.552 17.629 Atomic orbital electron populations 1.21716 0.93789 1.01846 1.01926 1.22029 0.94961 0.95725 0.96967 1.21471 1.01688 0.93260 1.01358 1.24027 0.93591 0.98302 0.96754 1.68850 1.29627 1.13993 1.04322 1.22620 1.00007 0.91480 0.99087 1.20271 0.81109 0.82869 0.86749 1.90656 1.56137 1.47992 1.47045 1.45870 1.53319 1.08105 1.28043 1.20990 0.93787 0.96220 0.85301 1.19329 0.97545 0.89038 0.93579 1.21167 0.93110 1.42899 1.04418 0.92904 1.25779 0.94803 0.95732 1.01406 1.70735 1.39750 1.30584 1.12135 0.83574 0.76352 0.75778 0.74808 1.20758 1.21464 1.21453 1.22893 0.91570 1.01827 1.06840 1.22749 0.99099 1.03387 0.95820 1.23922 0.92764 0.97806 0.96976 0.92290 0.92236 0.92659 0.91179 0.92594 0.92563 0.91411 0.89634 0.91677 0.87787 0.76474 0.91929 0.94282 0.91261 0.90062 0.91494 0.91306 0.89544 0.89213 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.30 37.16 0.35 -0.73 16 2 C -0.10 -0.97 1.53 -153.98 -0.24 -1.21 16 3 C -0.12 -1.18 9.22 37.15 0.34 -0.84 16 4 C 0.00 0.02 6.87 -7.54 -0.05 -0.03 16 5 N -0.45 -6.32 5.87 -246.04 -1.44 -7.76 16 6 C 0.00 0.00 5.31 -4.98 -0.03 -0.03 16 7 C 0.51 9.61 7.67 -10.99 -0.08 9.53 16 8 O -0.54 -12.26 15.76 5.56 0.09 -12.17 16 9 N -0.70 -13.84 5.46 -60.29 -0.33 -14.17 16 10 C 0.16 3.65 5.43 -4.04 -0.02 3.63 16 11 C 0.01 0.14 0.99 -155.66 -0.15 -0.02 16 12 C -0.58 -14.99 8.44 -34.44 -0.29 -15.28 16 13 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 14 C 0.03 0.80 5.39 -17.82 -0.10 0.71 16 15 N -0.90 -26.01 13.57 55.43 0.75 -25.26 16 16 Si 1.07 24.15 29.91 -169.99 -5.08 19.07 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.19 -4.01 9.96 -26.69 -0.27 -4.27 16 21 C -0.17 -3.86 8.74 -26.69 -0.23 -4.09 16 22 C 0.01 0.18 5.81 -7.54 -0.04 0.14 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 26 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.63 7.73 -51.93 -0.40 0.23 16 30 H 0.09 0.86 8.12 -51.93 -0.42 0.43 16 31 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 32 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.40 7.27 8.23 -40.82 -0.34 6.93 16 34 H 0.06 1.63 7.82 -51.93 -0.41 1.22 16 35 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.28 7.97 6.19 -40.82 -0.25 7.71 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 41 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 42 H 0.06 0.79 7.49 -51.93 -0.39 0.40 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -30.63 342.79 -8.94 -39.57 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.27 Total: 8.06 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.81 Total: -12.49 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -1.02 Total: -47.19 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.63 -8.94 -39.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569824863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.706 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds