Wall clock time and date at job start Mon Mar 30 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 113.38698 * 2 1 4 4 C 1.53517 * 114.16970 * 133.07672 * 2 1 3 5 5 N 1.47475 * 87.93352 * 139.66952 * 4 2 1 6 6 C 1.46900 * 111.00263 * 221.29624 * 5 4 2 7 7 C 1.50700 * 109.47139 * 169.99970 * 6 5 4 8 8 O 1.21276 * 119.99954 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 187.12943 * 14 12 11 17 17 H 1.48503 * 109.47001 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47286 * 300.00629 * 16 14 12 19 19 H 1.48507 * 109.46736 * 60.00434 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 C 1.47477 * 87.83969 * 332.99100 * 5 4 2 23 23 H 1.08995 * 109.47286 * 286.92641 * 1 2 3 24 24 H 1.08999 * 109.46749 * 46.92232 * 1 2 3 25 25 H 1.08999 * 109.47305 * 166.92186 * 1 2 3 26 26 H 1.09001 * 109.47510 * 193.07900 * 3 2 1 27 27 H 1.09003 * 109.47319 * 313.07892 * 3 2 1 28 28 H 1.09000 * 109.47403 * 73.07154 * 3 2 1 29 29 H 1.09006 * 113.47371 * 24.90205 * 4 2 1 30 30 H 1.08998 * 113.53407 * 254.44854 * 4 2 1 31 31 H 1.09005 * 109.46828 * 50.00258 * 6 5 4 32 32 H 1.08995 * 109.47092 * 290.00256 * 6 5 4 33 33 H 0.97003 * 119.99966 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 35 35 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 36 36 H 0.97004 * 120.00131 * 355.39941 * 15 14 12 37 37 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 38 38 H 1.08997 * 117.50012 * 0.02562 * 20 11 10 39 39 H 1.09003 * 117.50343 * 359.97438 * 21 11 10 40 40 H 1.08997 * 117.49643 * 144.97660 * 21 11 10 41 41 H 1.08996 * 113.47998 * 141.77117 * 22 5 4 42 42 H 1.09000 * 113.47760 * 272.24294 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1373 1.4042 0.0000 4 6 2.1585 -0.9566 1.0231 5 7 3.1618 -1.3060 0.0002 6 6 3.4330 -2.7497 0.0002 7 6 4.2660 -3.1044 -1.2045 8 8 4.6012 -2.2396 -1.9859 9 7 4.6385 -4.3827 -1.4135 10 6 5.4488 -4.7275 -2.5844 11 6 5.6327 -6.2450 -2.6483 12 6 6.3616 -6.8611 -1.4821 13 1 5.8044 -7.2757 -0.6550 14 6 7.7400 -6.8957 -1.4710 15 7 8.4209 -6.2692 -2.4056 16 14 8.6400 -7.8321 -0.1284 17 1 10.1052 -7.7149 -0.3403 18 1 8.2847 -7.2623 1.1960 19 1 8.2457 -9.2631 -0.1736 20 6 4.5155 -7.0654 -3.2963 21 6 5.8468 -6.8732 -4.0269 22 6 2.1586 -0.9567 -1.0229 23 1 -0.3633 0.2992 0.9831 24 1 -0.3633 0.7019 -0.7506 25 1 -0.3634 -1.0010 -0.2325 26 1 3.2003 1.3404 -0.2326 27 1 1.6372 2.0164 -0.7506 28 1 2.0068 1.8565 0.9831 29 1 1.5089 -1.7883 1.2961 30 1 2.5812 -0.4496 1.8905 31 1 2.4906 -3.2964 -0.0359 32 1 3.9739 -3.0177 0.9077 33 1 4.3707 -5.0743 -0.7883 34 1 6.4236 -4.2463 -2.5060 35 1 4.9456 -4.3840 -3.4882 36 1 7.9548 -5.8393 -3.1396 37 1 4.3078 -8.0507 -2.8790 38 1 3.6497 -6.5240 -3.6774 39 1 5.8562 -6.2054 -4.8884 40 1 6.5152 -7.7318 -4.0904 41 1 2.5811 -0.4488 -1.8898 42 1 1.5091 -1.7884 -1.2959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569824863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:11 Heat of formation + Delta-G solvation = -10.151352 kcal Electronic energy + Delta-G solvation = -20494.512530 eV Core-core repulsion = 17475.087317 eV Total energy + Delta-G solvation = -3019.425213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77015 -40.27279 -38.70403 -35.03988 -34.13770 -33.94587 -29.93759 -28.28226 -27.59402 -26.94800 -26.76376 -23.72250 -23.10410 -21.60591 -21.12941 -19.38660 -18.79524 -17.96707 -17.20307 -16.91765 -16.16314 -16.03967 -15.88402 -15.60733 -15.20413 -14.82981 -14.55061 -14.36342 -14.21565 -13.94363 -13.73162 -13.32334 -13.00338 -12.85240 -12.74267 -12.61991 -12.49650 -12.25964 -11.98861 -11.96130 -11.54671 -11.51448 -11.10050 -10.90296 -10.57896 -10.46334 -10.30091 -9.97094 -9.80542 -8.53833 -6.30029 1.56137 1.62474 1.66035 1.80768 2.17516 2.59337 3.07244 3.22673 3.24626 3.34489 3.71341 3.85891 4.03252 4.11810 4.19353 4.29088 4.32118 4.34200 4.41780 4.44940 4.52153 4.65213 4.76738 4.80102 4.81292 4.83421 4.85991 5.03153 5.04465 5.13783 5.14965 5.29763 5.31306 5.31694 5.41715 5.51474 5.54470 6.00447 6.12303 6.24739 6.66483 6.71873 7.32178 7.54118 8.85762 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028154 B = 0.004059 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.273928 B = 6895.811220 C = 7309.050387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.120 4.120 4 C 0.009 3.991 5 N -0.480 5.480 6 C 0.010 3.990 7 C 0.501 3.499 8 O -0.583 6.583 9 N -0.700 5.700 10 C 0.176 3.824 11 C -0.018 4.018 12 C -0.577 4.577 13 H 0.057 0.943 14 C -0.021 4.021 15 N -0.933 5.933 16 Si 1.110 2.890 17 H -0.293 1.293 18 H -0.271 1.271 19 H -0.270 1.270 20 C -0.161 4.161 21 C -0.180 4.180 22 C 0.008 3.992 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.411 0.589 34 H 0.019 0.981 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.225 7.937 7.841 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.086 4.086 3 C -0.177 4.177 4 C -0.119 4.119 5 N -0.202 5.202 6 C -0.121 4.121 7 C 0.288 3.712 8 O -0.463 6.463 9 N -0.351 5.351 10 C 0.051 3.949 11 C -0.019 4.019 12 C -0.614 4.614 13 H 0.075 0.925 14 C -0.221 4.221 15 N -0.568 5.568 16 Si 0.933 3.067 17 H -0.220 1.220 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.198 4.198 21 C -0.219 4.219 22 C -0.121 4.121 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.246 0.754 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.786 8.461 7.864 18.764 hybrid contribution -1.603 -0.557 -0.968 1.954 sum -16.390 7.904 6.895 19.459 Atomic orbital electron populations 1.21690 0.91678 1.02357 1.03054 1.22010 0.96432 0.95044 0.95126 1.21465 1.00002 0.93683 1.02579 1.24097 0.92779 0.98925 0.96145 1.68844 1.31537 1.13738 1.06101 1.22602 1.00473 0.92370 0.96642 1.21198 0.80603 0.81823 0.87562 1.90637 1.57757 1.49033 1.48919 1.45806 1.52883 1.08960 1.27408 1.20577 0.92139 0.95500 0.86658 1.19325 0.99740 0.89345 0.93456 1.21475 0.93226 1.41697 1.05036 0.92520 1.27054 0.96449 0.95983 1.02605 1.70845 1.40025 1.32837 1.13130 0.83013 0.74664 0.75725 0.73309 1.21957 1.19673 1.19552 1.22898 0.91138 1.01563 1.04220 1.22696 1.00355 1.02900 0.95905 1.23948 0.92864 0.98798 0.96462 0.90670 0.91856 0.92233 0.93903 0.91800 0.90856 0.89286 0.88958 0.88544 0.86338 0.75355 0.96301 0.94322 0.92586 0.89321 0.89093 0.90382 0.91472 0.92399 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.30 71.98 0.67 -1.00 16 2 C -0.09 -1.55 1.53 -51.84 -0.08 -1.63 16 3 C -0.12 -2.20 9.22 71.98 0.66 -1.54 16 4 C 0.01 0.16 6.87 83.58 0.57 0.73 16 5 N -0.48 -13.00 5.87 -932.32 -5.47 -18.47 16 6 C 0.01 0.28 5.31 85.56 0.45 0.73 16 7 C 0.50 18.91 7.67 87.66 0.67 19.59 16 8 O -0.58 -27.16 15.76 -3.02 -0.05 -27.21 16 9 N -0.70 -27.21 5.46 -463.06 -2.53 -29.73 16 10 C 0.18 8.14 5.43 86.38 0.47 8.61 16 11 C -0.02 -0.83 0.99 -52.93 -0.05 -0.88 16 12 C -0.58 -29.62 8.44 25.60 0.22 -29.41 16 13 H 0.06 2.81 7.82 -2.91 -0.02 2.79 16 14 C -0.02 -1.12 5.39 84.66 0.46 -0.66 16 15 N -0.93 -55.41 13.57 21.45 0.29 -55.12 16 16 Si 1.11 48.30 29.91 68.60 2.05 50.35 16 17 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 C -0.16 -6.33 9.96 30.62 0.30 -6.03 16 21 C -0.18 -8.06 8.74 30.62 0.27 -7.79 16 22 C 0.01 0.21 5.81 83.58 0.49 0.69 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.73 7.90 -2.39 -0.02 0.71 16 26 H 0.04 1.01 7.92 -2.39 -0.02 1.00 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.27 7.73 -2.38 -0.02 1.25 16 30 H 0.09 1.58 8.12 -2.39 -0.02 1.56 16 31 H 0.10 1.97 7.56 -2.38 -0.02 1.95 16 32 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.41 14.25 8.23 -92.71 -0.76 13.49 16 34 H 0.02 1.02 7.82 -2.39 -0.02 1.00 16 35 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 36 H 0.26 15.85 6.19 -92.71 -0.57 15.28 16 37 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 42 H 0.07 1.64 7.49 -2.39 -0.02 1.62 16 Total: -1.00 -68.03 342.79 -0.18 -68.21 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.42 Total: 30.56 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 5.10 Total: -18.59 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -7.71 Total: -103.32 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.05 Total: 50.35 kcal Total: -68.03 -0.18 -68.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569824863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.059 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds