Wall clock time and date at job start Mon Mar 30 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46962 * 124.72306 * 3 2 1 5 5 N 1.46896 * 109.47095 * 179.59740 * 4 3 2 6 6 C 1.46900 * 111.00223 * 299.74451 * 5 4 3 7 7 C 1.50697 * 109.46862 * 293.95491 * 6 5 4 8 8 H 1.08000 * 120.00195 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99921 * 179.97438 * 7 6 5 10 10 N 1.31524 * 120.00118 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00173 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47158 * 89.99993 * 11 9 7 13 13 H 1.48503 * 109.47457 * 210.00311 * 11 9 7 14 14 H 1.48504 * 109.47125 * 330.00254 * 11 9 7 15 15 C 1.46908 * 110.99946 * 63.69776 * 5 4 3 16 16 C 1.52995 * 109.47016 * 73.69533 * 15 5 4 17 17 C 1.53004 * 109.47015 * 174.87255 * 16 15 5 18 18 C 1.52995 * 109.47015 * 179.97438 * 17 16 15 19 19 H 1.09005 * 110.43564 * 305.69520 * 18 17 16 20 20 C 1.54818 * 110.48781 * 183.15435 * 18 17 16 21 21 C 1.55219 * 101.98924 * 220.51612 * 20 18 17 22 22 O 1.44384 * 103.56278 * 36.88042 * 21 20 18 23 23 C 1.43735 * 106.97665 * 320.00695 * 22 21 20 24 24 H 1.08998 * 109.47177 * 4.71961 * 3 2 1 25 25 H 1.09002 * 109.46878 * 244.71816 * 3 2 1 26 26 H 1.09003 * 109.46637 * 299.59544 * 4 3 2 27 27 H 1.09000 * 109.47172 * 59.59305 * 4 3 2 28 28 H 1.09005 * 109.47135 * 53.95281 * 6 5 4 29 29 H 1.08999 * 109.47634 * 173.95345 * 6 5 4 30 30 H 0.96991 * 119.99921 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46840 * 193.69156 * 15 5 4 32 32 H 1.08997 * 109.47078 * 313.68854 * 15 5 4 33 33 H 1.09000 * 109.47150 * 294.87152 * 16 15 5 34 34 H 1.08995 * 109.47279 * 54.87404 * 16 15 5 35 35 H 1.09000 * 109.47077 * 299.99942 * 17 16 15 36 36 H 1.08994 * 109.47092 * 59.99422 * 17 16 15 37 37 H 1.08996 * 110.90488 * 338.64288 * 20 18 17 38 38 H 1.09010 * 110.90590 * 102.24150 * 20 18 17 39 39 H 1.09003 * 110.52312 * 278.38750 * 21 20 18 40 40 H 1.08994 * 110.64525 * 155.43564 * 21 20 18 41 41 H 1.09000 * 109.88495 * 267.09322 * 23 22 21 42 42 H 1.09008 * 110.00090 * 146.00793 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8226 -1.1857 5 7 4.5865 0.8313 -1.1802 6 6 5.1049 1.4284 0.0579 7 6 4.7375 2.8892 0.1031 8 1 4.1756 3.3300 -0.7070 9 6 5.1188 3.6629 1.1788 10 7 4.7986 4.9380 1.2180 11 14 6.0901 2.9003 2.5803 12 1 7.5431 3.0185 2.2975 13 1 5.7728 3.6094 3.8459 14 1 5.7265 1.4664 2.7118 15 6 5.1217 -0.5228 -1.3758 16 6 4.9344 -0.9391 -2.8361 17 6 5.6046 -2.2945 -3.0700 18 6 5.4167 -2.7111 -4.5301 19 1 4.3599 -2.6965 -4.7970 20 6 6.0178 -4.1168 -4.7742 21 6 6.6914 -3.9429 -6.1617 22 8 7.2103 -2.5962 -6.1198 23 6 6.2215 -1.7857 -5.4631 24 1 2.9718 -1.0233 -0.0846 25 1 2.9711 0.4397 0.9293 26 1 2.7603 0.3794 -2.1152 27 1 2.7479 1.8448 -1.1049 28 1 4.6703 0.9176 0.9173 29 1 6.1897 1.3255 0.0845 30 1 5.0665 5.4821 1.9749 31 1 6.1833 -0.5331 -1.1285 32 1 4.5909 -1.2204 -0.7280 33 1 3.8700 -1.0170 -3.0580 34 1 5.3877 -0.1923 -3.4879 35 1 6.6690 -2.2166 -2.8481 36 1 5.1514 -3.0413 -2.4182 37 1 6.7568 -4.3616 -4.0113 38 1 5.2343 -4.8737 -4.8119 39 1 5.9556 -4.0461 -6.9593 40 1 7.5004 -4.6622 -6.2890 41 1 5.5583 -1.3377 -6.2030 42 1 6.7079 -1.0037 -4.8799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592083081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:30 Heat of formation + Delta-G solvation = -29.268980 kcal Electronic energy + Delta-G solvation = -20107.175015 eV Core-core repulsion = 17086.920800 eV Total energy + Delta-G solvation = -3020.254216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.68262 -38.17154 -36.12878 -34.77111 -32.63004 -31.52003 -30.37181 -29.21569 -27.26096 -25.13769 -23.86828 -22.77145 -21.22741 -20.29637 -19.61048 -17.55191 -16.87462 -16.75991 -16.17620 -15.50176 -15.10656 -14.92247 -14.58066 -14.15443 -13.87427 -13.56587 -13.37952 -12.96566 -12.89199 -12.53976 -12.35112 -12.20860 -11.89892 -11.69472 -11.59564 -11.51319 -11.31612 -11.11092 -10.87365 -10.80849 -10.66864 -10.55227 -10.46312 -10.00211 -9.85640 -9.79926 -9.34937 -8.62542 -7.52189 -6.10503 -4.08986 3.03459 3.06079 3.23710 3.30397 3.32643 3.78084 4.20988 4.32216 4.35951 4.45600 4.69268 4.76899 4.97835 5.01505 5.14378 5.20825 5.24962 5.35609 5.38120 5.45618 5.48012 5.56899 5.61043 5.64041 5.73279 5.76495 5.83389 5.91996 5.95727 6.07497 6.15331 6.35747 6.44081 6.57498 6.71124 6.75954 6.85937 7.49547 7.74308 7.82316 7.92598 8.57133 8.98504 9.50303 11.02461 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.004296 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.211375 B = 6515.628965 C = 7558.328686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C -0.074 4.074 4 C 0.071 3.929 5 N -0.518 5.518 6 C 0.155 3.845 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.897 5.897 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.044 3.956 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.121 4.121 19 H 0.082 0.918 20 C -0.152 4.152 21 C 0.045 3.955 22 O -0.381 6.381 23 C 0.048 3.952 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.096 0.904 28 H -0.004 1.004 29 H 0.027 0.973 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -18.154 -9.518 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.094 4.094 3 C -0.116 4.116 4 C -0.059 4.059 5 N -0.240 5.240 6 C 0.029 3.971 7 C -0.551 4.551 8 H 0.100 0.900 9 C -0.132 4.132 10 N -0.536 5.536 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.084 4.084 16 C -0.155 4.155 17 C -0.147 4.147 18 C -0.140 4.140 19 H 0.100 0.900 20 C -0.190 4.190 21 C -0.032 4.032 22 O -0.300 6.300 23 C -0.029 4.029 24 H 0.118 0.882 25 H 0.136 0.864 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.013 0.987 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.653 -17.597 -9.877 20.247 hybrid contribution 0.493 -0.816 1.689 1.940 sum 2.146 -18.414 -8.188 20.266 Atomic orbital electron populations 1.81151 1.13156 1.09679 1.09626 1.29220 0.95224 0.92432 0.92533 1.20223 0.81707 1.03900 1.05739 1.22099 0.88791 1.01041 0.93963 1.62195 1.05190 1.17261 1.39332 1.20317 0.95236 0.96073 0.85473 1.21010 1.35978 0.91578 1.06513 0.90024 1.24901 0.95686 0.94686 0.97937 1.69887 1.46620 1.05876 1.31224 0.86922 0.81039 0.79751 0.82382 1.20124 1.21270 1.19183 1.22220 1.00200 0.90512 0.95508 1.21645 1.00582 0.95849 0.97421 1.21619 1.01415 0.97550 0.94164 1.22577 1.00400 0.94327 0.96690 0.89981 1.23262 1.00618 0.97209 0.97908 1.23569 0.98286 0.84952 0.96383 1.88876 1.42095 1.19310 1.79706 1.23351 0.90788 0.94170 0.94583 0.88248 0.86379 0.91491 0.88596 0.98694 0.95532 0.92596 0.91221 0.95085 0.92175 0.90822 0.91491 0.91867 0.90324 0.90404 0.92440 0.89257 0.92483 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.18 18.54 42.15 0.78 -7.40 16 2 C 0.22 3.50 15.43 -20.76 -0.32 3.18 16 3 C -0.07 -1.03 5.07 -29.52 -0.15 -1.18 16 4 C 0.07 1.12 4.98 -3.82 -0.02 1.10 16 5 N -0.52 -8.99 4.65 -236.07 -1.10 -10.09 16 6 C 0.15 3.26 3.54 -4.98 -0.02 3.24 16 7 C -0.51 -13.33 9.06 -34.44 -0.31 -13.64 16 8 H 0.08 2.34 7.35 -52.49 -0.39 1.95 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -26.43 13.96 55.43 0.77 -25.65 16 11 Si 0.87 20.15 27.47 -169.99 -4.67 15.48 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 15 C 0.04 0.59 4.86 -3.82 -0.02 0.57 16 16 C -0.12 -1.30 5.04 -26.73 -0.13 -1.44 16 17 C -0.11 -1.01 4.41 -26.73 -0.12 -1.12 16 18 C -0.12 -1.05 3.06 -89.09 -0.27 -1.32 16 19 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.15 -1.15 6.73 -24.60 -0.17 -1.32 16 21 C 0.04 0.37 7.72 38.33 0.30 0.67 16 22 O -0.38 -4.41 11.52 -35.23 -0.41 -4.82 16 23 C 0.05 0.48 6.94 37.73 0.26 0.74 16 24 H 0.10 1.12 6.25 -51.93 -0.32 0.80 16 25 H 0.12 1.82 6.26 -51.93 -0.33 1.50 16 26 H 0.07 0.92 6.76 -51.93 -0.35 0.56 16 27 H 0.10 1.79 6.85 -51.93 -0.36 1.44 16 28 H 0.00 -0.09 5.05 -51.93 -0.26 -0.35 16 29 H 0.03 0.57 7.27 -51.93 -0.38 0.19 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.07 0.96 7.77 -51.93 -0.40 0.56 16 32 H 0.03 0.37 5.87 -51.93 -0.30 0.07 16 33 H 0.06 0.65 6.97 -51.93 -0.36 0.29 16 34 H 0.07 0.90 6.99 -51.93 -0.36 0.54 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 38 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.97 6.82 -51.92 -0.35 0.62 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -30.12 332.60 -7.38 -37.50 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.70 Total: -1.34 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.07 Total: -8.70 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.46 Total: -43.13 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.41 Total: -4.82 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.12 -7.38 -37.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592083081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.232 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds