Wall clock time and date at job start Mon Mar 30 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46962 * 124.72306 * 3 2 1 5 5 N 1.46896 * 109.47095 * 179.59740 * 4 3 2 6 6 C 1.46900 * 111.00223 * 299.74451 * 5 4 3 7 7 C 1.50697 * 109.46862 * 293.95491 * 6 5 4 8 8 H 1.08000 * 120.00195 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99921 * 179.97438 * 7 6 5 10 10 N 1.31524 * 120.00118 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00173 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47158 * 89.99993 * 11 9 7 13 13 H 1.48503 * 109.47457 * 210.00311 * 11 9 7 14 14 H 1.48504 * 109.47125 * 330.00254 * 11 9 7 15 15 C 1.46908 * 110.99946 * 63.69776 * 5 4 3 16 16 C 1.52995 * 109.47016 * 73.69533 * 15 5 4 17 17 C 1.53004 * 109.47015 * 174.87255 * 16 15 5 18 18 C 1.52995 * 109.47015 * 179.97438 * 17 16 15 19 19 H 1.09005 * 110.43564 * 305.69520 * 18 17 16 20 20 C 1.54818 * 110.48781 * 183.15435 * 18 17 16 21 21 C 1.55219 * 101.98924 * 220.51612 * 20 18 17 22 22 O 1.44384 * 103.56278 * 36.88042 * 21 20 18 23 23 C 1.43735 * 106.97665 * 320.00695 * 22 21 20 24 24 H 1.08998 * 109.47177 * 4.71961 * 3 2 1 25 25 H 1.09002 * 109.46878 * 244.71816 * 3 2 1 26 26 H 1.09003 * 109.46637 * 299.59544 * 4 3 2 27 27 H 1.09000 * 109.47172 * 59.59305 * 4 3 2 28 28 H 1.09005 * 109.47135 * 53.95281 * 6 5 4 29 29 H 1.08999 * 109.47634 * 173.95345 * 6 5 4 30 30 H 0.96991 * 119.99921 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46840 * 193.69156 * 15 5 4 32 32 H 1.08997 * 109.47078 * 313.68854 * 15 5 4 33 33 H 1.09000 * 109.47150 * 294.87152 * 16 15 5 34 34 H 1.08995 * 109.47279 * 54.87404 * 16 15 5 35 35 H 1.09000 * 109.47077 * 299.99942 * 17 16 15 36 36 H 1.08994 * 109.47092 * 59.99422 * 17 16 15 37 37 H 1.08996 * 110.90488 * 338.64288 * 20 18 17 38 38 H 1.09010 * 110.90590 * 102.24150 * 20 18 17 39 39 H 1.09003 * 110.52312 * 278.38750 * 21 20 18 40 40 H 1.08994 * 110.64525 * 155.43564 * 21 20 18 41 41 H 1.09000 * 109.88495 * 267.09322 * 23 22 21 42 42 H 1.09008 * 110.00090 * 146.00793 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8226 -1.1857 5 7 4.5865 0.8313 -1.1802 6 6 5.1049 1.4284 0.0579 7 6 4.7375 2.8892 0.1031 8 1 4.1756 3.3300 -0.7070 9 6 5.1188 3.6629 1.1788 10 7 4.7986 4.9380 1.2180 11 14 6.0901 2.9003 2.5803 12 1 7.5431 3.0185 2.2975 13 1 5.7728 3.6094 3.8459 14 1 5.7265 1.4664 2.7118 15 6 5.1217 -0.5228 -1.3758 16 6 4.9344 -0.9391 -2.8361 17 6 5.6046 -2.2945 -3.0700 18 6 5.4167 -2.7111 -4.5301 19 1 4.3599 -2.6965 -4.7970 20 6 6.0178 -4.1168 -4.7742 21 6 6.6914 -3.9429 -6.1617 22 8 7.2103 -2.5962 -6.1198 23 6 6.2215 -1.7857 -5.4631 24 1 2.9718 -1.0233 -0.0846 25 1 2.9711 0.4397 0.9293 26 1 2.7603 0.3794 -2.1152 27 1 2.7479 1.8448 -1.1049 28 1 4.6703 0.9176 0.9173 29 1 6.1897 1.3255 0.0845 30 1 5.0665 5.4821 1.9749 31 1 6.1833 -0.5331 -1.1285 32 1 4.5909 -1.2204 -0.7280 33 1 3.8700 -1.0170 -3.0580 34 1 5.3877 -0.1923 -3.4879 35 1 6.6690 -2.2166 -2.8481 36 1 5.1514 -3.0413 -2.4182 37 1 6.7568 -4.3616 -4.0113 38 1 5.2343 -4.8737 -4.8119 39 1 5.9556 -4.0461 -6.9593 40 1 7.5004 -4.6622 -6.2890 41 1 5.5583 -1.3377 -6.2030 42 1 6.7079 -1.0037 -4.8799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592083081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:29 Heat of formation + Delta-G solvation = -49.120171 kcal Electronic energy + Delta-G solvation = -20108.035828 eV Core-core repulsion = 17086.920800 eV Total energy + Delta-G solvation = -3021.115028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41554 -39.44441 -37.42187 -35.71424 -34.55005 -32.43070 -31.67553 -30.21974 -28.63997 -26.17810 -25.19347 -23.70504 -22.32425 -21.03155 -20.90301 -18.99668 -18.54411 -17.53530 -16.94294 -16.80156 -16.31586 -15.97076 -15.81205 -15.48071 -15.10419 -14.80137 -14.53182 -14.09447 -13.95196 -13.77875 -13.58694 -13.39320 -13.11110 -12.94072 -12.73199 -12.57779 -12.48951 -12.23017 -12.14720 -11.91574 -11.77720 -11.56058 -11.50157 -11.47706 -11.17452 -11.02125 -10.68438 -10.54502 -8.86620 -8.19170 -6.21735 1.43191 1.43431 1.53083 1.76654 1.80728 2.41994 2.98357 3.11525 3.16548 3.38229 3.70412 3.87172 4.02223 4.13614 4.21892 4.31797 4.34195 4.44006 4.45743 4.51366 4.62345 4.68643 4.82287 4.87252 4.90043 4.94536 4.99665 5.08283 5.11283 5.13656 5.15210 5.21168 5.30568 5.36789 5.53125 5.60385 5.67400 6.02041 6.09469 6.43127 6.61401 6.77643 6.87350 7.42091 8.97552 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.004296 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.211375 B = 6515.628965 C = 7558.328686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.244 3.756 3 C -0.062 4.062 4 C 0.075 3.925 5 N -0.536 5.536 6 C 0.162 3.838 7 C -0.509 4.509 8 H 0.037 0.963 9 C 0.004 3.996 10 N -0.954 5.954 11 Si 0.940 3.060 12 H -0.271 1.271 13 H -0.293 1.293 14 H -0.234 1.234 15 C 0.043 3.957 16 C -0.110 4.110 17 C -0.101 4.101 18 C -0.118 4.118 19 H 0.091 0.909 20 C -0.146 4.146 21 C 0.037 3.963 22 O -0.410 6.410 23 C 0.043 3.957 24 H 0.141 0.859 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.013 0.987 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -21.708 -9.066 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.073 4.073 3 C -0.104 4.104 4 C -0.055 4.055 5 N -0.258 5.258 6 C 0.035 3.965 7 C -0.547 4.547 8 H 0.055 0.945 9 C -0.192 4.192 10 N -0.596 5.596 11 Si 0.764 3.236 12 H -0.196 1.196 13 H -0.219 1.219 14 H -0.157 1.157 15 C -0.084 4.084 16 C -0.148 4.148 17 C -0.139 4.139 18 C -0.136 4.136 19 H 0.109 0.891 20 C -0.184 4.184 21 C -0.039 4.039 22 O -0.330 6.330 23 C -0.034 4.034 24 H 0.158 0.842 25 H 0.126 0.874 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.030 0.970 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.200 -21.193 -9.449 23.308 hybrid contribution 0.306 0.325 1.400 1.469 sum 2.507 -20.869 -8.049 22.507 Atomic orbital electron populations 1.81178 1.14426 1.11181 1.10830 1.29434 0.95336 0.91134 0.91370 1.20218 0.80372 1.05664 1.04145 1.21973 0.88083 0.99406 0.96079 1.62045 1.06008 1.20204 1.37532 1.20092 0.95407 0.93089 0.87865 1.21326 1.34212 0.94438 1.04734 0.94516 1.25851 0.97148 0.94985 1.01221 1.70073 1.49119 1.07938 1.32440 0.85815 0.79264 0.80417 0.78073 1.19648 1.21921 1.15692 1.22334 1.00169 0.88512 0.97405 1.21576 1.01174 0.96556 0.95537 1.21536 1.00931 0.96619 0.94814 1.22555 1.00652 0.94583 0.95855 0.89067 1.23250 1.01022 0.96873 0.97240 1.23791 0.99073 0.83724 0.97330 1.88843 1.43139 1.20979 1.80023 1.23395 0.90728 0.94356 0.94894 0.84191 0.87364 0.89018 0.92676 0.96996 0.95335 0.92834 0.91440 0.92514 0.91367 0.92507 0.92092 0.90148 0.90270 0.88464 0.91550 0.88138 0.92443 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.20 18.54 20.01 0.37 -16.83 16 2 C 0.24 7.18 15.43 89.44 1.38 8.56 16 3 C -0.06 -1.56 5.07 28.79 0.15 -1.42 16 4 C 0.07 2.25 4.98 86.31 0.43 2.68 16 5 N -0.54 -17.72 4.65 -900.78 -4.18 -21.90 16 6 C 0.16 6.56 3.54 85.56 0.30 6.87 16 7 C -0.51 -26.98 9.06 25.60 0.23 -26.75 16 8 H 0.04 2.22 7.35 -2.91 -0.02 2.20 16 9 C 0.00 0.25 5.47 84.65 0.46 0.71 16 10 N -0.95 -58.31 13.96 21.45 0.30 -58.01 16 11 Si 0.94 41.05 27.47 68.60 1.88 42.93 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.23 -8.88 6.54 99.48 0.65 -8.23 16 15 C 0.04 1.01 4.86 86.30 0.42 1.43 16 16 C -0.11 -2.15 5.04 30.59 0.15 -2.00 16 17 C -0.10 -1.53 4.41 30.59 0.13 -1.39 16 18 C -0.12 -1.71 3.06 -9.80 -0.03 -1.74 16 19 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 20 C -0.15 -1.76 6.73 31.98 0.22 -1.55 16 21 C 0.04 0.53 7.72 72.74 0.56 1.10 16 22 O -0.41 -9.12 11.52 -148.98 -1.72 -10.83 16 23 C 0.04 0.82 6.94 72.35 0.50 1.32 16 24 H 0.14 2.42 6.25 -2.39 -0.01 2.41 16 25 H 0.11 3.04 6.26 -2.39 -0.01 3.03 16 26 H 0.09 2.30 6.76 -2.39 -0.02 2.29 16 27 H 0.05 2.11 6.85 -2.39 -0.02 2.10 16 28 H 0.01 0.47 5.05 -2.38 -0.01 0.45 16 29 H 0.03 1.16 7.27 -2.39 -0.02 1.14 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.07 1.64 7.77 -2.39 -0.02 1.62 16 32 H 0.06 1.06 5.87 -2.39 -0.01 1.05 16 33 H 0.07 1.23 6.97 -2.39 -0.02 1.21 16 34 H 0.06 1.31 6.99 -2.39 -0.02 1.29 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.96 7.87 -2.39 -0.02 0.94 16 38 H 0.10 0.81 8.14 -2.38 -0.02 0.80 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.67 6.82 -2.38 -0.02 1.66 16 Total: -1.00 -68.03 332.60 2.51 -65.52 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.94 Total: 11.29 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.91 Total: -12.16 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -3.51 Total: -96.75 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.72 Total: -10.83 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.88 Total: 42.93 kcal Total: -68.03 2.51 -65.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592083081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.397 kcal (2) G-P(sol) polarization free energy of solvation -68.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds