Wall clock time and date at job start Mon Mar 30 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86792 * 120.00260 * 2 1 4 4 H 1.48507 * 109.47165 * 269.99912 * 3 2 1 5 5 H 1.48497 * 109.47410 * 29.99679 * 3 2 1 6 6 H 1.48498 * 109.47341 * 150.00224 * 3 2 1 7 7 C 1.38946 * 119.99453 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99830 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00282 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99905 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47256 * 174.41235 * 12 10 9 14 14 C 1.46850 * 110.99887 * 300.14982 * 13 12 10 15 15 C 1.53030 * 109.52311 * 185.83753 * 14 13 12 16 16 C 1.53118 * 109.28214 * 300.82657 * 15 14 13 17 17 C 1.53119 * 109.16145 * 57.64945 * 16 15 14 18 18 C 1.46845 * 111.00110 * 64.36226 * 13 12 10 19 19 H 1.09000 * 109.45223 * 294.17376 * 18 13 12 20 20 C 1.53004 * 109.46153 * 54.14529 * 18 13 12 21 21 C 1.53773 * 113.61361 * 180.02562 * 20 18 13 22 22 C 1.53786 * 87.17529 * 140.02146 * 21 20 18 23 23 C 1.53777 * 113.69059 * 277.59003 * 20 18 13 24 24 H 0.97001 * 119.99788 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99812 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47334 * 54.41009 * 12 10 9 27 27 H 1.09003 * 109.47131 * 294.41516 * 12 10 9 28 28 H 1.08998 * 109.45570 * 65.82536 * 14 13 12 29 29 H 1.08996 * 109.45508 * 305.85241 * 14 13 12 30 30 H 1.08998 * 109.50479 * 180.88484 * 15 14 13 31 31 H 1.09006 * 109.50198 * 60.76605 * 15 14 13 32 32 H 1.09004 * 109.51849 * 297.74758 * 16 15 14 33 33 H 1.08999 * 109.52417 * 177.55908 * 16 15 14 34 34 H 1.08997 * 109.50395 * 182.40405 * 17 16 15 35 35 H 1.08997 * 109.50261 * 62.29168 * 17 16 15 36 36 H 1.09006 * 112.84899 * 48.85775 * 20 18 13 37 37 H 1.09001 * 113.61737 * 254.61407 * 21 20 18 38 38 H 1.09000 * 113.61453 * 25.43470 * 21 20 18 39 39 H 1.09001 * 113.61223 * 89.15573 * 22 21 20 40 40 H 1.08999 * 113.61584 * 220.05915 * 22 21 20 41 41 H 1.09001 * 113.61656 * 334.55290 * 23 20 18 42 42 H 1.08996 * 113.61696 * 105.37644 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 7 2.1923 -5.9762 -0.1381 14 6 2.9543 -5.8685 -1.3889 15 6 3.8240 -7.1150 -1.5668 16 6 4.7777 -7.2404 -0.3755 17 6 3.9607 -7.3020 0.9180 18 6 3.0870 -6.0501 1.0240 19 1 3.7224 -5.1649 1.0498 20 6 2.2537 -6.1170 2.3054 21 6 3.0998 -6.1967 3.5869 22 6 2.0829 -5.2370 4.2271 23 6 1.7724 -4.7434 2.8018 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3906 -0.0005 26 1 0.5436 -4.8780 -0.8376 27 1 0.6944 -4.9658 0.9338 28 1 3.5903 -4.9841 -1.3515 29 1 2.2641 -5.7843 -2.2283 30 1 4.4012 -7.0276 -2.4873 31 1 3.1876 -7.9985 -1.6181 32 1 5.4404 -6.3754 -0.3469 33 1 5.3691 -8.1503 -0.4766 34 1 4.6354 -7.3484 1.7728 35 1 3.3265 -8.1884 0.9059 36 1 1.4628 -6.8656 2.2574 37 1 3.1114 -7.1873 4.0416 38 1 4.0964 -5.7686 3.4795 39 1 1.2449 -5.7442 4.7053 40 1 2.5389 -4.4786 4.8635 41 1 2.4054 -3.9164 2.4801 42 1 0.7131 -4.5606 2.6215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592197802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:40 Heat of formation + Delta-G solvation = -21.185102 kcal Electronic energy + Delta-G solvation = -21854.494828 eV Core-core repulsion = 18834.591155 eV Total energy + Delta-G solvation = -3019.903673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14800 -37.86162 -36.82115 -34.04416 -32.83454 -31.25162 -30.65352 -27.41052 -25.52496 -25.18459 -24.25179 -22.49344 -21.33490 -19.64623 -18.99758 -18.96957 -17.78832 -15.97676 -15.89515 -15.27947 -14.56646 -14.47328 -14.23235 -13.99900 -13.82756 -13.58896 -13.02186 -12.68765 -12.58183 -12.18144 -11.92916 -11.74832 -11.54497 -11.40868 -11.22644 -11.06355 -10.72963 -10.51491 -10.44308 -10.35362 -10.25051 -10.12366 -10.05129 -9.68420 -9.44180 -9.40235 -9.11280 -7.96772 -7.28525 -6.43465 -3.84682 3.14800 3.24131 3.29500 3.87689 4.15885 4.38719 4.87058 4.98955 5.02067 5.11420 5.16316 5.22541 5.25683 5.31077 5.42434 5.68892 5.77739 5.88830 5.93870 5.95959 6.02193 6.07291 6.09964 6.11192 6.19071 6.20422 6.26448 6.28361 6.33734 6.39206 6.47342 6.54937 6.55461 6.72846 6.85340 6.98433 7.52525 7.55108 7.67182 8.03985 8.59023 9.15487 9.52809 10.03791 10.73092 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.006239 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.734607 B = 4487.011885 C = 5198.273723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.101 0.899 9 N -0.559 5.559 10 C 0.414 3.586 11 O -0.594 6.594 12 C 0.030 3.970 13 N -0.508 5.508 14 C 0.038 3.962 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.105 4.105 18 C 0.078 3.922 19 H 0.085 0.915 20 C -0.101 4.101 21 C -0.131 4.131 22 C -0.144 4.144 23 C -0.139 4.139 24 H 0.272 0.728 25 H 0.392 0.608 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -12.439 2.982 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.430 4.430 8 H 0.119 0.881 9 N -0.194 5.194 10 C 0.200 3.800 11 O -0.481 6.481 12 C -0.102 4.102 13 N -0.231 5.231 14 C -0.090 4.090 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.143 4.143 18 C -0.030 4.030 19 H 0.103 0.897 20 C -0.119 4.119 21 C -0.169 4.169 22 C -0.182 4.182 23 C -0.176 4.176 24 H 0.082 0.918 25 H 0.225 0.775 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.049 -12.714 2.957 13.405 hybrid contribution 0.103 1.715 -0.055 1.719 sum 3.153 -10.999 2.902 11.804 Atomic orbital electron populations 1.69614 1.05919 1.28169 1.50299 1.25255 0.95592 0.99702 0.97254 0.85899 0.79255 0.81000 0.78387 1.20427 1.20891 1.19498 1.19686 0.93301 0.82457 1.47587 0.88086 1.42060 1.09229 1.04898 1.63209 1.21061 0.88777 0.85858 0.84272 1.90400 1.13974 1.86934 1.56778 1.22301 0.95869 0.88411 1.03618 1.62417 1.18395 1.39918 1.02374 1.22271 0.96839 0.98462 0.91425 1.21528 0.97433 0.98518 0.97415 1.21547 0.97812 1.01005 0.95314 1.21538 0.97675 0.98229 0.96894 1.21880 0.93729 0.98622 0.88744 0.89747 1.22561 0.98299 0.97762 0.93313 1.22838 0.98330 0.99097 0.96586 1.22853 0.99114 0.99173 0.97040 1.23215 1.01353 0.97671 0.95333 0.91847 0.77496 0.90089 0.88335 0.90924 0.92153 0.92354 0.92071 0.92137 0.92758 0.92234 0.92114 0.89436 0.92082 0.90354 0.90740 0.91871 0.89079 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 10 C 0.41 9.35 5.40 -10.99 -0.06 9.29 16 11 O -0.59 -14.92 11.11 5.55 0.06 -14.86 16 12 C 0.03 0.54 5.30 -4.98 -0.03 0.51 16 13 N -0.51 -8.66 4.69 -228.13 -1.07 -9.73 16 14 C 0.04 0.65 5.00 -3.84 -0.02 0.63 16 15 C -0.11 -1.57 6.09 -26.65 -0.16 -1.73 16 16 C -0.12 -1.64 6.00 -26.61 -0.16 -1.80 16 17 C -0.11 -1.48 5.16 -26.65 -0.14 -1.62 16 18 C 0.08 1.29 1.40 -67.73 -0.10 1.19 16 19 H 0.08 1.72 5.48 -51.93 -0.28 1.44 16 20 C -0.10 -1.49 2.70 -89.81 -0.24 -1.73 16 21 C -0.13 -1.72 6.69 -25.92 -0.17 -1.89 16 22 C -0.14 -1.96 8.10 -25.80 -0.21 -2.17 16 23 C -0.14 -2.25 5.31 -25.81 -0.14 -2.39 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.10 1.67 4.54 -51.93 -0.24 1.44 16 28 H 0.07 1.50 5.70 -51.93 -0.30 1.21 16 29 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.82 6.74 -51.93 -0.35 1.47 16 42 H 0.06 1.04 6.85 -51.93 -0.36 0.68 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -28.27 315.14 -9.09 -37.37 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -6.81 Total: 13.50 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.66 Total: -9.54 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.40 Total: -47.18 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.06 Total: -14.86 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.27 -9.09 -37.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592197802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.181 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds