Wall clock time and date at job start Mon Mar 30 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86792 * 120.00260 * 2 1 4 4 H 1.48507 * 109.47165 * 269.99912 * 3 2 1 5 5 H 1.48497 * 109.47410 * 29.99679 * 3 2 1 6 6 H 1.48498 * 109.47341 * 150.00224 * 3 2 1 7 7 C 1.38946 * 119.99453 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99954 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99830 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00282 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99905 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47256 * 174.41235 * 12 10 9 14 14 C 1.46850 * 110.99887 * 300.14982 * 13 12 10 15 15 C 1.53030 * 109.52311 * 185.83753 * 14 13 12 16 16 C 1.53118 * 109.28214 * 300.82657 * 15 14 13 17 17 C 1.53119 * 109.16145 * 57.64945 * 16 15 14 18 18 C 1.46845 * 111.00110 * 64.36226 * 13 12 10 19 19 H 1.09000 * 109.45223 * 294.17376 * 18 13 12 20 20 C 1.53004 * 109.46153 * 54.14529 * 18 13 12 21 21 C 1.53773 * 113.61361 * 180.02562 * 20 18 13 22 22 C 1.53786 * 87.17529 * 140.02146 * 21 20 18 23 23 C 1.53777 * 113.69059 * 277.59003 * 20 18 13 24 24 H 0.97001 * 119.99788 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99812 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47334 * 54.41009 * 12 10 9 27 27 H 1.09003 * 109.47131 * 294.41516 * 12 10 9 28 28 H 1.08998 * 109.45570 * 65.82536 * 14 13 12 29 29 H 1.08996 * 109.45508 * 305.85241 * 14 13 12 30 30 H 1.08998 * 109.50479 * 180.88484 * 15 14 13 31 31 H 1.09006 * 109.50198 * 60.76605 * 15 14 13 32 32 H 1.09004 * 109.51849 * 297.74758 * 16 15 14 33 33 H 1.08999 * 109.52417 * 177.55908 * 16 15 14 34 34 H 1.08997 * 109.50395 * 182.40405 * 17 16 15 35 35 H 1.08997 * 109.50261 * 62.29168 * 17 16 15 36 36 H 1.09006 * 112.84899 * 48.85775 * 20 18 13 37 37 H 1.09001 * 113.61737 * 254.61407 * 21 20 18 38 38 H 1.09000 * 113.61453 * 25.43470 * 21 20 18 39 39 H 1.09001 * 113.61223 * 89.15573 * 22 21 20 40 40 H 1.08999 * 113.61584 * 220.05915 * 22 21 20 41 41 H 1.09001 * 113.61656 * 334.55290 * 23 20 18 42 42 H 1.08996 * 113.61696 * 105.37644 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 7 2.1923 -5.9762 -0.1381 14 6 2.9543 -5.8685 -1.3889 15 6 3.8240 -7.1150 -1.5668 16 6 4.7777 -7.2404 -0.3755 17 6 3.9607 -7.3020 0.9180 18 6 3.0870 -6.0501 1.0240 19 1 3.7224 -5.1649 1.0498 20 6 2.2537 -6.1170 2.3054 21 6 3.0998 -6.1967 3.5869 22 6 2.0829 -5.2370 4.2271 23 6 1.7724 -4.7434 2.8018 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3906 -0.0005 26 1 0.5436 -4.8780 -0.8376 27 1 0.6944 -4.9658 0.9338 28 1 3.5903 -4.9841 -1.3515 29 1 2.2641 -5.7843 -2.2283 30 1 4.4012 -7.0276 -2.4873 31 1 3.1876 -7.9985 -1.6181 32 1 5.4404 -6.3754 -0.3469 33 1 5.3691 -8.1503 -0.4766 34 1 4.6354 -7.3484 1.7728 35 1 3.3265 -8.1884 0.9059 36 1 1.4628 -6.8656 2.2574 37 1 3.1114 -7.1873 4.0416 38 1 4.0964 -5.7686 3.4795 39 1 1.2449 -5.7442 4.7053 40 1 2.5389 -4.4786 4.8635 41 1 2.4054 -3.9164 2.4801 42 1 0.7131 -4.5606 2.6215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592197802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:40 Heat of formation + Delta-G solvation = -39.371867 kcal Electronic energy + Delta-G solvation = -21855.283465 eV Core-core repulsion = 18834.591155 eV Total energy + Delta-G solvation = -3020.692310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58739 -39.47375 -38.16094 -35.97292 -34.26156 -33.25586 -31.89932 -28.97909 -26.78843 -26.70427 -25.78524 -23.84394 -22.61371 -21.18846 -20.60937 -20.19631 -19.73133 -17.70867 -17.25440 -16.73799 -16.38767 -15.84077 -15.64372 -15.51264 -15.48740 -14.98765 -14.52300 -14.00976 -13.97949 -13.49989 -13.45902 -13.21008 -13.04563 -12.96291 -12.66682 -12.50289 -12.44695 -12.16968 -11.93970 -11.83379 -11.53022 -11.47540 -11.31968 -11.16119 -10.91277 -10.87295 -10.63491 -9.97885 -8.92741 -8.46159 -5.96094 1.33336 1.37129 1.49304 2.04373 2.26859 3.02112 3.19382 3.29006 3.69398 3.80579 3.86705 3.96600 4.06027 4.17242 4.22825 4.39216 4.45422 4.55440 4.59467 4.65734 4.75095 4.80412 4.86297 4.90167 4.94641 5.00136 5.05947 5.09901 5.12526 5.18057 5.20655 5.32056 5.34858 5.38643 5.41724 5.59927 5.70982 5.94501 6.15900 6.28057 6.59303 7.12029 7.56335 8.11938 8.69013 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.006239 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.734607 B = 4487.011885 C = 5198.273723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.988 3.012 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.330 4.330 8 H 0.075 0.925 9 N -0.572 5.572 10 C 0.421 3.579 11 O -0.619 6.619 12 C 0.037 3.963 13 N -0.495 5.495 14 C 0.036 3.964 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.100 4.100 18 C 0.077 3.923 19 H 0.038 0.962 20 C -0.095 4.095 21 C -0.121 4.121 22 C -0.135 4.135 23 C -0.149 4.149 24 H 0.277 0.723 25 H 0.393 0.607 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -14.549 3.567 15.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.812 3.188 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.459 4.459 8 H 0.093 0.907 9 N -0.209 5.209 10 C 0.209 3.791 11 O -0.507 6.507 12 C -0.095 4.095 13 N -0.217 5.217 14 C -0.093 4.093 15 C -0.142 4.142 16 C -0.157 4.157 17 C -0.138 4.138 18 C -0.031 4.031 19 H 0.056 0.944 20 C -0.114 4.114 21 C -0.159 4.159 22 C -0.172 4.172 23 C -0.187 4.187 24 H 0.086 0.914 25 H 0.227 0.773 26 H 0.115 0.885 27 H 0.133 0.867 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.664 -14.842 3.540 15.489 hybrid contribution 0.260 2.332 -0.249 2.360 sum 2.924 -12.510 3.291 13.262 Atomic orbital electron populations 1.69675 1.06748 1.29171 1.50438 1.25979 0.96484 1.02250 0.96456 0.85002 0.77876 0.77314 0.78601 1.19705 1.19445 1.20042 1.19591 0.92456 0.84244 1.49658 0.90714 1.42109 1.09175 1.04953 1.64638 1.21949 0.88626 0.86782 0.81782 1.90413 1.15631 1.87604 1.57058 1.22370 0.96006 0.86052 1.05068 1.62557 1.18275 1.38199 1.02707 1.22282 0.96728 0.98588 0.91652 1.21505 0.97275 0.97224 0.98203 1.21565 0.97663 1.01351 0.95121 1.21527 0.97613 0.97131 0.97531 1.21862 0.93662 0.98224 0.89331 0.94383 1.22589 0.98798 0.96884 0.93091 1.22773 0.97264 1.00415 0.95399 1.22865 0.99996 0.99113 0.95247 1.23121 1.00145 0.97206 0.98191 0.91360 0.77320 0.88531 0.86745 0.95202 0.91809 0.91178 0.90262 0.94552 0.89808 0.91051 0.90340 0.87551 0.89085 0.91649 0.88205 0.92282 0.93812 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 2 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 3 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 8 H 0.07 4.59 7.16 -2.91 -0.02 4.57 16 9 N -0.57 -29.60 5.29 -306.98 -1.62 -31.22 16 10 C 0.42 19.87 5.40 87.66 0.47 20.35 16 11 O -0.62 -33.11 11.11 -3.07 -0.03 -33.15 16 12 C 0.04 1.34 5.30 85.56 0.45 1.79 16 13 N -0.50 -16.54 4.69 -875.67 -4.11 -20.65 16 14 C 0.04 1.22 5.00 86.32 0.43 1.65 16 15 C -0.10 -2.75 6.09 30.64 0.19 -2.57 16 16 C -0.12 -3.07 6.00 30.67 0.18 -2.89 16 17 C -0.10 -2.58 5.16 30.64 0.16 -2.43 16 18 C 0.08 2.51 1.40 44.94 0.06 2.58 16 19 H 0.04 1.63 5.48 -2.39 -0.01 1.62 16 20 C -0.10 -2.67 2.70 -10.27 -0.03 -2.69 16 21 C -0.12 -2.93 6.69 31.12 0.21 -2.72 16 22 C -0.13 -3.44 8.10 31.20 0.25 -3.19 16 23 C -0.15 -4.88 5.31 31.19 0.17 -4.71 16 24 H 0.28 14.19 8.31 -92.71 -0.77 13.41 16 25 H 0.39 19.67 7.90 -92.71 -0.73 18.94 16 26 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.11 3.84 4.54 -2.39 -0.01 3.83 16 28 H 0.03 1.29 5.70 -2.39 -0.01 1.28 16 29 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.68 7.48 -2.39 -0.02 1.66 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.85 6.74 -2.39 -0.02 1.83 16 42 H 0.06 2.01 6.85 -2.39 -0.02 2.00 16 Total: -1.00 -63.99 315.14 0.65 -63.34 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: 0.28 Total: 38.99 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 3.83 Total: -13.08 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -5.45 Total: -101.82 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.03 Total: -33.15 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -63.99 0.65 -63.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592197802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.971 kcal (2) G-P(sol) polarization free energy of solvation -63.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds