Wall clock time and date at job start Mon Mar 30 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00411 * 2 1 4 4 H 1.48500 * 109.47236 * 239.99828 * 3 2 1 5 5 H 1.48508 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47216 * 119.99665 * 3 2 1 7 7 C 1.37880 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46973 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47218 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99899 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00127 * 179.97438 * 12 11 10 15 15 C 1.46491 * 119.99871 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.90733 * 31.14184 * 15 14 12 17 17 C 1.55138 * 110.99739 * 267.27056 * 15 14 12 18 18 C 1.54320 * 103.02210 * 206.25674 * 17 15 14 19 19 N 1.47437 * 107.23257 * 22.28526 * 18 17 15 20 20 C 1.46901 * 111.00223 * 123.25511 * 19 18 17 21 21 C 1.52997 * 117.49684 * 122.77656 * 20 19 18 22 22 C 1.52998 * 117.49680 * 54.15549 * 20 19 18 23 23 C 1.47846 * 108.56923 * 0.98995 * 19 18 17 24 24 H 0.97005 * 119.99853 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47586 * 59.99202 * 9 7 2 26 26 H 1.09011 * 109.46539 * 299.99419 * 9 7 2 27 27 H 1.08996 * 109.47719 * 59.99700 * 10 9 7 28 28 H 1.09004 * 109.47101 * 299.98830 * 10 9 7 29 29 H 1.08996 * 109.47605 * 59.99769 * 11 10 9 30 30 H 1.09003 * 109.47388 * 299.99618 * 11 10 9 31 31 H 0.97005 * 119.99460 * 0.02562 * 14 12 11 32 32 H 1.09000 * 110.70480 * 87.87312 * 17 15 14 33 33 H 1.08999 * 110.85101 * 324.71131 * 17 15 14 34 34 H 1.08998 * 109.88703 * 262.87492 * 18 17 15 35 35 H 1.08998 * 110.02181 * 141.76373 * 18 17 15 36 36 H 1.09002 * 115.55318 * 268.48725 * 20 19 18 37 37 H 1.08996 * 117.50101 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.49934 * 145.02328 * 21 20 19 39 39 H 1.08997 * 117.50285 * 214.97822 * 22 20 19 40 40 H 1.09003 * 117.49910 * 0.02562 * 22 20 19 41 41 H 1.08995 * 110.38030 * 94.73340 * 23 19 18 42 42 H 1.09000 * 110.37255 * 217.07995 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4800 -4.9871 0.0025 12 6 2.4593 -6.1326 0.0031 13 8 3.6517 -5.9111 0.0026 14 7 2.0100 -7.4033 0.0043 15 6 2.9619 -8.5168 0.0043 16 1 3.8775 -8.2458 0.5301 17 6 3.2697 -8.9851 -1.4423 18 6 3.6696 -10.4633 -1.2516 19 7 3.0855 -10.9126 0.0254 20 6 2.2223 -12.0844 -0.1738 21 6 2.5562 -13.3504 0.6178 22 6 2.8281 -13.2950 -0.8868 23 6 2.3265 -9.7900 0.6167 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8895 26 1 0.6240 -2.5567 0.8905 27 1 2.8712 -3.6040 0.8922 28 1 2.8723 -3.6049 -0.8878 29 1 0.8537 -5.0455 -0.8877 30 1 0.8530 -5.0442 0.8923 31 1 1.0562 -7.5805 0.0043 32 1 4.0962 -8.4137 -1.8647 33 1 2.3845 -8.9035 -2.0731 34 1 4.7553 -10.5519 -1.2144 35 1 3.2765 -11.0650 -2.0711 36 1 1.1698 -11.8675 -0.3563 37 1 3.4160 -13.3137 1.2866 38 1 1.7233 -13.9667 0.9563 39 1 2.1741 -13.8747 -1.5382 40 1 3.8672 -13.2220 -1.2078 41 1 1.2736 -9.8578 0.3431 42 1 2.4382 -9.7859 1.7010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594252352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:38 Heat of formation + Delta-G solvation = -23.602516 kcal Electronic energy + Delta-G solvation = -19561.900419 eV Core-core repulsion = 16541.891919 eV Total energy + Delta-G solvation = -3020.008500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14845 -38.94542 -36.47985 -34.18232 -33.73797 -32.00846 -29.99776 -28.94344 -27.36979 -23.90832 -23.07113 -22.48975 -21.39996 -20.88222 -20.11131 -19.73281 -17.09751 -16.94215 -16.39793 -15.96881 -15.31255 -15.21002 -14.85491 -14.40860 -13.95047 -13.81473 -13.44487 -13.21787 -12.73508 -12.38985 -12.24808 -12.06250 -11.83166 -11.77766 -11.66179 -11.32721 -11.18958 -10.77693 -10.76817 -10.61021 -10.53938 -10.42842 -9.69907 -9.66366 -9.26282 -9.05345 -9.01998 -8.69111 -8.30672 -5.96586 -3.97951 2.89868 3.05046 3.35484 3.37510 3.40747 3.44737 3.69200 4.25321 4.42163 4.50284 4.54547 4.63219 4.77088 4.92828 4.94903 5.06596 5.14020 5.22108 5.28270 5.39368 5.40146 5.55502 5.61315 5.63960 5.71554 5.72307 5.80645 5.85341 5.94569 6.26900 6.41365 6.57855 6.72524 6.73869 6.94356 7.17426 7.57718 7.71915 7.84811 8.04072 8.44449 8.48328 9.08900 9.65836 11.14886 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.066404 B = 0.002568 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.562430 B =10901.927641 C =11077.568882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.515 3.485 13 O -0.535 6.535 14 N -0.733 5.733 15 C 0.136 3.864 16 H 0.105 0.895 17 C -0.155 4.155 18 C 0.044 3.956 19 N -0.499 5.499 20 C -0.001 4.001 21 C -0.163 4.163 22 C -0.178 4.178 23 C 0.041 3.959 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -26.858 -1.285 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.303 3.697 13 O -0.411 6.411 14 N -0.385 5.385 15 C 0.030 3.970 16 H 0.123 0.877 17 C -0.195 4.195 18 C -0.083 4.083 19 N -0.223 5.223 20 C -0.110 4.110 21 C -0.201 4.201 22 C -0.215 4.215 23 C -0.087 4.087 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.233 0.767 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.682 -26.706 -0.946 26.856 hybrid contribution -0.784 0.994 -0.596 1.400 sum 1.897 -25.711 -1.542 25.827 Atomic orbital electron populations 1.69955 1.06032 1.26636 1.51153 1.25024 0.94871 0.99256 0.95398 0.86644 0.79561 0.83037 0.78688 1.20237 1.21346 1.20215 1.21240 0.93158 0.91027 1.50229 0.92626 1.19128 0.93966 0.91468 0.97097 1.21445 0.98633 0.91523 1.01693 1.21851 0.98136 0.94083 1.03750 1.21298 0.90434 0.83652 0.74328 1.90679 1.17343 1.84629 1.48404 1.46042 1.09622 1.05572 1.77309 1.21994 0.94009 0.85485 0.95536 0.87698 1.23198 1.02631 0.95926 0.97709 1.22819 1.00633 0.94408 0.90472 1.63359 1.31068 1.04353 1.23511 1.22705 0.95376 0.86889 1.06034 1.23068 1.03658 0.99098 0.94237 1.23077 1.02317 1.00452 0.95670 1.23260 0.96038 0.88849 1.00539 0.93025 0.96639 0.96614 0.92681 0.92724 0.89398 0.89313 0.76695 0.90015 0.91095 0.90202 0.92027 0.89040 0.88079 0.88801 0.88691 0.88290 0.92846 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.27 5.70 -27.88 -0.16 -2.43 16 12 C 0.51 8.16 7.83 -10.98 -0.09 8.08 16 13 O -0.54 -10.67 15.62 5.55 0.09 -10.58 16 14 N -0.73 -8.41 5.20 -51.74 -0.27 -8.68 16 15 C 0.14 1.47 3.42 -65.79 -0.22 1.25 16 16 H 0.11 1.39 7.54 -51.93 -0.39 0.99 16 17 C -0.15 -1.54 6.64 -24.91 -0.17 -1.70 16 18 C 0.04 0.38 6.40 -2.84 -0.02 0.36 16 19 N -0.50 -4.43 5.34 -223.30 -1.19 -5.62 16 20 C 0.00 -0.01 5.20 -67.71 -0.35 -0.36 16 21 C -0.16 -1.09 10.46 -26.73 -0.28 -1.37 16 22 C -0.18 -1.14 9.38 -26.73 -0.25 -1.39 16 23 C 0.04 0.36 6.37 -2.29 -0.01 0.35 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.40 3.45 8.57 -40.82 -0.35 3.10 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.48 7.02 -51.93 -0.36 0.11 16 36 H 0.09 0.65 7.66 -51.93 -0.40 0.25 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.66 7.94 -51.93 -0.41 0.25 16 41 H 0.05 0.41 7.37 -51.93 -0.38 0.02 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -32.93 343.60 -10.03 -42.96 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.33 Total: -1.02 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.22 Total: -12.89 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.72 Total: -40.78 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.93 -10.03 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594252352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.359 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds