Wall clock time and date at job start Mon Mar 30 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00411 * 2 1 4 4 H 1.48500 * 109.47236 * 239.99828 * 3 2 1 5 5 H 1.48508 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47216 * 119.99665 * 3 2 1 7 7 C 1.37880 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46973 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47218 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99899 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00127 * 179.97438 * 12 11 10 15 15 C 1.46491 * 119.99871 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.90733 * 31.14184 * 15 14 12 17 17 C 1.55138 * 110.99739 * 267.27056 * 15 14 12 18 18 C 1.54320 * 103.02210 * 206.25674 * 17 15 14 19 19 N 1.47437 * 107.23257 * 22.28526 * 18 17 15 20 20 C 1.46901 * 111.00223 * 123.25511 * 19 18 17 21 21 C 1.52997 * 117.49684 * 122.77656 * 20 19 18 22 22 C 1.52998 * 117.49680 * 54.15549 * 20 19 18 23 23 C 1.47846 * 108.56923 * 0.98995 * 19 18 17 24 24 H 0.97005 * 119.99853 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47586 * 59.99202 * 9 7 2 26 26 H 1.09011 * 109.46539 * 299.99419 * 9 7 2 27 27 H 1.08996 * 109.47719 * 59.99700 * 10 9 7 28 28 H 1.09004 * 109.47101 * 299.98830 * 10 9 7 29 29 H 1.08996 * 109.47605 * 59.99769 * 11 10 9 30 30 H 1.09003 * 109.47388 * 299.99618 * 11 10 9 31 31 H 0.97005 * 119.99460 * 0.02562 * 14 12 11 32 32 H 1.09000 * 110.70480 * 87.87312 * 17 15 14 33 33 H 1.08999 * 110.85101 * 324.71131 * 17 15 14 34 34 H 1.08998 * 109.88703 * 262.87492 * 18 17 15 35 35 H 1.08998 * 110.02181 * 141.76373 * 18 17 15 36 36 H 1.09002 * 115.55318 * 268.48725 * 20 19 18 37 37 H 1.08996 * 117.50101 * 0.02562 * 21 20 19 38 38 H 1.08998 * 117.49934 * 145.02328 * 21 20 19 39 39 H 1.08997 * 117.50285 * 214.97822 * 22 20 19 40 40 H 1.09003 * 117.49910 * 0.02562 * 22 20 19 41 41 H 1.08995 * 110.38030 * 94.73340 * 23 19 18 42 42 H 1.09000 * 110.37255 * 217.07995 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4800 -4.9871 0.0025 12 6 2.4593 -6.1326 0.0031 13 8 3.6517 -5.9111 0.0026 14 7 2.0100 -7.4033 0.0043 15 6 2.9619 -8.5168 0.0043 16 1 3.8775 -8.2458 0.5301 17 6 3.2697 -8.9851 -1.4423 18 6 3.6696 -10.4633 -1.2516 19 7 3.0855 -10.9126 0.0254 20 6 2.2223 -12.0844 -0.1738 21 6 2.5562 -13.3504 0.6178 22 6 2.8281 -13.2950 -0.8868 23 6 2.3265 -9.7900 0.6167 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8895 26 1 0.6240 -2.5567 0.8905 27 1 2.8712 -3.6040 0.8922 28 1 2.8723 -3.6049 -0.8878 29 1 0.8537 -5.0455 -0.8877 30 1 0.8530 -5.0442 0.8923 31 1 1.0562 -7.5805 0.0043 32 1 4.0962 -8.4137 -1.8647 33 1 2.3845 -8.9035 -2.0731 34 1 4.7553 -10.5519 -1.2144 35 1 3.2765 -11.0650 -2.0711 36 1 1.1698 -11.8675 -0.3563 37 1 3.4160 -13.3137 1.2866 38 1 1.7233 -13.9667 0.9563 39 1 2.1741 -13.8747 -1.5382 40 1 3.8672 -13.2220 -1.2078 41 1 1.2736 -9.8578 0.3431 42 1 2.4382 -9.7859 1.7010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594252352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:38 Heat of formation + Delta-G solvation = -45.888004 kcal Electronic energy + Delta-G solvation = -19562.866790 eV Core-core repulsion = 16541.891919 eV Total energy + Delta-G solvation = -3020.974871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14264 -39.91535 -37.23350 -36.09955 -34.76001 -33.98462 -30.83596 -30.16383 -28.81598 -25.77542 -23.67435 -23.15115 -22.61577 -21.95892 -21.33797 -20.81447 -18.63397 -17.93579 -17.74238 -17.07186 -16.65693 -16.48686 -16.06060 -15.62651 -15.07389 -14.86998 -14.44856 -14.40349 -14.20949 -13.77695 -13.35234 -13.26125 -13.05017 -12.76138 -12.61396 -12.53109 -12.49998 -12.39637 -12.28937 -11.98731 -11.55133 -11.46365 -11.31339 -11.27776 -11.01257 -10.77227 -10.54018 -10.11214 -9.34013 -8.20223 -6.30103 1.39473 1.42384 1.50471 1.63661 2.06753 2.41790 2.78288 3.01232 3.12610 3.48864 3.67475 3.89947 3.98807 4.04018 4.12922 4.21341 4.26999 4.27942 4.29102 4.33736 4.53894 4.77369 4.79340 4.82086 4.85870 4.89631 4.97303 5.01861 5.09579 5.11371 5.15372 5.19826 5.32363 5.45816 5.54749 5.75837 5.85692 5.87178 6.11010 6.27656 6.54371 6.85141 7.27082 7.38376 8.91038 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.066404 B = 0.002568 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.562430 B =10901.927641 C =11077.568882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.519 3.481 13 O -0.583 6.583 14 N -0.710 5.710 15 C 0.132 3.868 16 H 0.078 0.922 17 C -0.150 4.150 18 C 0.050 3.950 19 N -0.511 5.511 20 C -0.012 4.012 21 C -0.163 4.163 22 C -0.171 4.171 23 C 0.051 3.949 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -28.067 -1.521 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.169 4.169 12 C 0.307 3.693 13 O -0.462 6.462 14 N -0.362 5.362 15 C 0.026 3.974 16 H 0.096 0.904 17 C -0.190 4.190 18 C -0.077 4.077 19 N -0.235 5.235 20 C -0.121 4.121 21 C -0.201 4.201 22 C -0.209 4.209 23 C -0.077 4.077 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.926 -27.965 -1.181 28.056 hybrid contribution -0.578 1.312 -0.516 1.524 sum 1.348 -26.653 -1.697 26.741 Atomic orbital electron populations 1.70059 1.07465 1.27848 1.51519 1.25911 0.95855 1.03071 0.94708 0.85557 0.78392 0.78398 0.79050 1.19454 1.20334 1.19445 1.21672 0.93330 0.92859 1.50805 0.93108 1.19018 0.94198 0.92348 0.95547 1.21160 0.97630 0.93071 1.00231 1.21681 0.97874 0.91531 1.05842 1.21090 0.89397 0.84794 0.74046 1.90671 1.19115 1.85430 1.51009 1.45768 1.10835 1.04335 1.75294 1.22008 0.93109 0.85894 0.96346 0.90416 1.23133 1.02354 0.96634 0.96880 1.22756 1.00500 0.93484 0.90953 1.63344 1.31775 1.04768 1.23590 1.22808 0.95631 0.86560 1.07113 1.23108 1.03785 0.98825 0.94358 1.23128 1.02299 0.99734 0.95717 1.23172 0.96787 0.87426 1.00309 0.92652 0.98039 0.98025 0.94167 0.94188 0.87299 0.87219 0.74543 0.91779 0.90188 0.90673 0.90745 0.88143 0.89074 0.87427 0.87226 0.88776 0.90953 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.55 -32.46 9.11 25.60 0.23 -32.23 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.08 -3.65 4.44 30.59 0.14 -3.51 16 11 C -0.13 -4.12 5.70 29.85 0.17 -3.95 16 12 C 0.52 16.13 7.83 87.66 0.69 16.82 16 13 O -0.58 -23.67 15.62 -3.04 -0.05 -23.72 16 14 N -0.71 -15.19 5.20 -435.99 -2.27 -17.46 16 15 C 0.13 2.76 3.42 46.38 0.16 2.92 16 16 H 0.08 2.10 7.54 -2.39 -0.02 2.08 16 17 C -0.15 -2.85 6.64 31.78 0.21 -2.64 16 18 C 0.05 0.80 6.40 86.65 0.55 1.36 16 19 N -0.51 -8.23 5.34 -860.38 -4.59 -12.82 16 20 C -0.01 -0.16 5.20 44.91 0.23 0.08 16 21 C -0.16 -1.86 10.46 30.59 0.32 -1.54 16 22 C -0.17 -1.82 9.38 30.59 0.29 -1.53 16 23 C 0.05 0.80 6.37 86.78 0.55 1.36 16 24 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 27 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 29 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.42 6.03 8.57 -92.70 -0.79 5.24 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.00 7.02 -2.39 -0.02 0.98 16 36 H 0.10 1.12 7.66 -2.39 -0.02 1.10 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 1.10 7.94 -2.39 -0.02 1.08 16 41 H 0.07 0.87 7.37 -2.39 -0.02 0.86 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -71.68 343.60 -0.25 -71.93 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.19 Total: 11.61 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 4.15 Total: -20.73 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -6.58 Total: -86.51 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.68 -0.25 -71.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594252352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.045 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds