Wall clock time and date at job start Mon Mar 30 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00093 * 2 1 4 4 H 1.48499 * 109.46732 * 269.99734 * 3 2 1 5 5 H 1.48493 * 109.47142 * 29.99839 * 3 2 1 6 6 H 1.48493 * 109.46765 * 149.99687 * 3 2 1 7 7 C 1.37879 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00474 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99728 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47346 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47235 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.46969 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00381 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99802 * 180.02562 * 12 11 10 15 15 C 1.48564 * 121.89760 * 359.97438 * 14 12 11 16 16 C 1.52778 * 104.84494 * 111.56433 * 15 14 12 17 17 N 1.43866 * 111.77817 * 58.57562 * 16 15 14 18 18 C 1.43845 * 118.09842 * 264.60819 * 17 16 15 19 19 C 1.52851 * 110.98669 * 81.82521 * 18 17 16 20 20 C 1.46562 * 121.89715 * 180.02562 * 14 12 11 21 21 C 1.52961 * 107.31584 * 155.67481 * 20 14 12 22 22 C 1.46549 * 114.88300 * 39.60303 * 17 16 15 23 23 H 0.96999 * 119.99606 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47255 * 59.99452 * 9 7 2 25 25 H 1.09005 * 109.46951 * 300.00329 * 9 7 2 26 26 H 1.09003 * 109.46718 * 59.99747 * 10 9 7 27 27 H 1.08997 * 109.46746 * 299.99996 * 10 9 7 28 28 H 1.09003 * 109.47217 * 60.00367 * 11 10 9 29 29 H 1.08997 * 109.47508 * 299.99845 * 11 10 9 30 30 H 1.08998 * 110.35964 * 230.39060 * 15 14 12 31 31 H 1.08994 * 110.35891 * 352.73504 * 15 14 12 32 32 H 1.09001 * 109.01744 * 297.98583 * 16 15 14 33 33 H 1.08996 * 109.02013 * 179.16570 * 16 15 14 34 34 H 1.08998 * 109.17251 * 202.21723 * 18 17 16 35 35 H 1.09005 * 109.17262 * 321.43911 * 18 17 16 36 36 H 1.09000 * 109.01161 * 115.16260 * 19 18 17 37 37 H 1.09001 * 109.01363 * 233.95251 * 19 18 17 38 38 H 1.09001 * 108.72185 * 38.24818 * 20 14 12 39 39 H 1.08994 * 109.19622 * 320.10662 * 21 20 14 40 40 H 1.09003 * 109.15065 * 200.81048 * 21 20 14 41 41 H 1.08998 * 109.25482 * 48.49200 * 22 17 16 42 42 H 1.09004 * 109.25501 * 167.95361 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0009 12 6 6.0537 -4.0575 0.0015 13 8 5.2656 -4.9794 0.0014 14 7 7.3788 -4.3038 0.0020 15 6 8.3811 -3.2072 0.0016 16 6 9.0454 -3.2836 1.3753 17 7 9.6543 -4.5669 1.6031 18 6 8.8964 -5.5593 2.3172 19 6 7.9193 -6.2766 1.3860 20 6 7.9128 -5.6687 0.0020 21 6 9.3181 -5.6077 -0.5989 22 6 10.3337 -5.1425 0.4391 23 1 -0.4849 0.8401 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8752 -0.6805 -0.8889 26 1 3.6584 -3.1503 -0.8893 27 1 3.6578 -3.1506 0.8907 28 1 5.9148 -2.1230 0.8910 29 1 5.9148 -2.1229 -0.8890 30 1 9.1181 -3.3674 -0.7853 31 1 7.8887 -2.2435 -0.1284 32 1 8.2932 -3.1058 2.1439 33 1 9.8105 -2.5103 1.4433 34 1 9.5804 -6.2894 2.7496 35 1 8.3377 -5.0751 3.1182 36 1 8.2050 -7.3258 1.3115 37 1 6.9158 -6.2125 1.8067 38 1 7.2856 -6.2898 -0.6375 39 1 9.3192 -4.9122 -1.4380 40 1 9.5981 -6.5992 -0.9549 41 1 10.9834 -4.3893 -0.0066 42 1 10.9360 -5.9930 0.7586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594349430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:15 Heat of formation + Delta-G solvation = -29.444326 kcal Electronic energy + Delta-G solvation = -21110.272006 eV Core-core repulsion = 18090.010187 eV Total energy + Delta-G solvation = -3020.261819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30918 -38.67731 -34.61252 -34.42784 -33.45350 -31.99639 -31.49801 -28.83974 -27.76740 -25.51960 -23.91544 -23.47763 -21.90563 -20.21381 -19.23390 -18.61213 -17.40154 -17.08100 -16.62122 -15.87832 -15.59380 -15.16219 -14.53859 -14.20091 -13.73910 -13.68389 -13.38809 -13.36172 -13.09596 -12.61917 -12.46418 -12.37065 -12.22083 -11.93236 -11.63886 -11.34126 -11.30482 -11.00786 -10.89289 -10.78333 -10.66885 -9.98503 -9.81747 -9.69102 -9.37409 -9.12188 -8.80301 -8.50523 -8.19266 -6.00165 -3.97915 2.84306 2.90754 3.31671 3.38737 3.41593 3.62493 4.35930 4.47466 4.48724 4.62609 4.70465 4.85031 4.89746 4.94652 5.00306 5.07475 5.18907 5.33061 5.37174 5.42362 5.52773 5.54512 5.57140 5.60956 5.66323 5.73876 5.78658 5.83446 6.03249 6.09307 6.46776 6.56299 6.70479 6.92434 6.96587 7.17500 7.36441 7.45674 7.46589 7.83200 8.37099 8.60022 9.06606 9.61841 11.13611 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.004052 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.830916 B = 6907.807640 C = 7257.641730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.087 4.087 11 C -0.138 4.138 12 C 0.518 3.482 13 O -0.534 6.534 14 N -0.621 5.621 15 C 0.068 3.932 16 C 0.071 3.929 17 N -0.582 5.582 18 C 0.089 3.911 19 C -0.166 4.166 20 C 0.152 3.848 21 C -0.164 4.164 22 C 0.078 3.922 23 H 0.262 0.738 24 H 0.015 0.985 25 H 0.010 0.990 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.349 -9.002 1.303 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.125 4.125 11 C -0.178 4.178 12 C 0.308 3.692 13 O -0.410 6.410 14 N -0.358 5.358 15 C -0.057 4.057 16 C -0.057 4.057 17 N -0.304 5.304 18 C -0.039 4.039 19 C -0.206 4.206 20 C 0.048 3.952 21 C -0.204 4.204 22 C -0.050 4.050 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.006 -9.266 1.587 26.715 hybrid contribution -0.257 0.717 -0.578 0.956 sum 24.749 -8.549 1.009 26.203 Atomic orbital electron populations 1.69927 1.06312 1.26783 1.51357 1.25054 0.94743 0.99146 0.94695 0.86756 0.80318 0.83641 0.78411 1.20344 1.21423 1.19056 1.21164 0.89529 0.94545 1.50433 0.90968 1.19601 0.97325 0.92121 0.96043 1.21268 0.89225 0.99544 1.02466 1.21874 1.00583 0.92017 1.03342 1.21110 0.80679 0.92623 0.74834 1.90684 1.54571 1.46861 1.48887 1.48846 1.05650 1.06293 1.74969 1.22942 0.92252 0.91389 0.99075 1.21680 0.97854 0.89857 0.96316 1.56386 1.40380 1.05065 1.28533 1.21286 0.94182 0.93321 0.95160 1.22174 1.01883 1.00299 0.96248 1.20325 0.94103 0.84151 0.96624 1.22471 0.95151 1.02896 0.99850 1.21679 0.95090 0.99353 0.88832 0.92795 0.96690 0.97146 0.92174 0.92150 0.89556 0.89549 0.89846 0.88547 0.90871 0.90400 0.90935 0.91372 0.90994 0.90921 0.90348 0.90718 0.90650 0.90787 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.56 13.96 55.43 0.77 -27.78 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 8 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.85 4.44 -26.73 -0.12 -1.97 16 11 C -0.14 -2.22 4.12 -27.89 -0.11 -2.33 16 12 C 0.52 8.45 7.72 -10.99 -0.08 8.36 16 13 O -0.53 -10.89 15.86 5.56 0.09 -10.80 16 14 N -0.62 -7.68 2.56 -165.60 -0.42 -8.11 16 15 C 0.07 0.61 5.93 -3.02 -0.02 0.59 16 16 C 0.07 0.61 5.97 -5.55 -0.03 0.58 16 17 N -0.58 -5.05 4.16 -240.52 -1.00 -6.05 16 18 C 0.09 0.81 6.02 -5.53 -0.03 0.78 16 19 C -0.17 -1.74 5.75 -27.73 -0.16 -1.90 16 20 C 0.15 1.70 2.55 -68.84 -0.18 1.52 16 21 C -0.16 -1.30 5.24 -27.01 -0.14 -1.44 16 22 C 0.08 0.55 5.41 -4.28 -0.02 0.53 16 23 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 24 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 25 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 26 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 27 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 28 H 0.09 1.23 8.02 -51.93 -0.42 0.82 16 29 H 0.09 1.23 7.76 -51.93 -0.40 0.82 16 30 H 0.08 0.63 5.36 -51.93 -0.28 0.36 16 31 H 0.10 0.82 6.27 -51.93 -0.33 0.49 16 32 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.67 7.78 -51.93 -0.40 0.27 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 39 H 0.07 0.59 6.38 -51.93 -0.33 0.26 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.45 7.99 -51.93 -0.42 0.03 16 42 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -34.03 318.18 -8.99 -43.01 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.11 Total: -2.71 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.44 Total: -9.54 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.65 Total: -41.94 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.03 -8.99 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594349430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.570 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds