Wall clock time and date at job start Mon Mar 30 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00093 * 2 1 4 4 H 1.48499 * 109.46732 * 269.99734 * 3 2 1 5 5 H 1.48493 * 109.47142 * 29.99839 * 3 2 1 6 6 H 1.48493 * 109.46765 * 149.99687 * 3 2 1 7 7 C 1.37879 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00474 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99728 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47346 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47235 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.46969 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00381 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99802 * 180.02562 * 12 11 10 15 15 C 1.48564 * 121.89760 * 359.97438 * 14 12 11 16 16 C 1.52778 * 104.84494 * 111.56433 * 15 14 12 17 17 N 1.43866 * 111.77817 * 58.57562 * 16 15 14 18 18 C 1.43845 * 118.09842 * 264.60819 * 17 16 15 19 19 C 1.52851 * 110.98669 * 81.82521 * 18 17 16 20 20 C 1.46562 * 121.89715 * 180.02562 * 14 12 11 21 21 C 1.52961 * 107.31584 * 155.67481 * 20 14 12 22 22 C 1.46549 * 114.88300 * 39.60303 * 17 16 15 23 23 H 0.96999 * 119.99606 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47255 * 59.99452 * 9 7 2 25 25 H 1.09005 * 109.46951 * 300.00329 * 9 7 2 26 26 H 1.09003 * 109.46718 * 59.99747 * 10 9 7 27 27 H 1.08997 * 109.46746 * 299.99996 * 10 9 7 28 28 H 1.09003 * 109.47217 * 60.00367 * 11 10 9 29 29 H 1.08997 * 109.47508 * 299.99845 * 11 10 9 30 30 H 1.08998 * 110.35964 * 230.39060 * 15 14 12 31 31 H 1.08994 * 110.35891 * 352.73504 * 15 14 12 32 32 H 1.09001 * 109.01744 * 297.98583 * 16 15 14 33 33 H 1.08996 * 109.02013 * 179.16570 * 16 15 14 34 34 H 1.08998 * 109.17251 * 202.21723 * 18 17 16 35 35 H 1.09005 * 109.17262 * 321.43911 * 18 17 16 36 36 H 1.09000 * 109.01161 * 115.16260 * 19 18 17 37 37 H 1.09001 * 109.01363 * 233.95251 * 19 18 17 38 38 H 1.09001 * 108.72185 * 38.24818 * 20 14 12 39 39 H 1.08994 * 109.19622 * 320.10662 * 21 20 14 40 40 H 1.09003 * 109.15065 * 200.81048 * 21 20 14 41 41 H 1.08998 * 109.25482 * 48.49200 * 22 17 16 42 42 H 1.09004 * 109.25501 * 167.95361 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0009 12 6 6.0537 -4.0575 0.0015 13 8 5.2656 -4.9794 0.0014 14 7 7.3788 -4.3038 0.0020 15 6 8.3811 -3.2072 0.0016 16 6 9.0454 -3.2836 1.3753 17 7 9.6543 -4.5669 1.6031 18 6 8.8964 -5.5593 2.3172 19 6 7.9193 -6.2766 1.3860 20 6 7.9128 -5.6687 0.0020 21 6 9.3181 -5.6077 -0.5989 22 6 10.3337 -5.1425 0.4391 23 1 -0.4849 0.8401 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8752 -0.6805 -0.8889 26 1 3.6584 -3.1503 -0.8893 27 1 3.6578 -3.1506 0.8907 28 1 5.9148 -2.1230 0.8910 29 1 5.9148 -2.1229 -0.8890 30 1 9.1181 -3.3674 -0.7853 31 1 7.8887 -2.2435 -0.1284 32 1 8.2932 -3.1058 2.1439 33 1 9.8105 -2.5103 1.4433 34 1 9.5804 -6.2894 2.7496 35 1 8.3377 -5.0751 3.1182 36 1 8.2050 -7.3258 1.3115 37 1 6.9158 -6.2125 1.8067 38 1 7.2856 -6.2898 -0.6375 39 1 9.3192 -4.9122 -1.4380 40 1 9.5981 -6.5992 -0.9549 41 1 10.9834 -4.3893 -0.0066 42 1 10.9360 -5.9930 0.7586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594349430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:15 Heat of formation + Delta-G solvation = -53.141039 kcal Electronic energy + Delta-G solvation = -21111.299573 eV Core-core repulsion = 18090.010187 eV Total energy + Delta-G solvation = -3021.289386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.16952 -39.85423 -36.22006 -35.59423 -34.48872 -33.89181 -32.20137 -30.40111 -28.85414 -26.46081 -25.45703 -24.25758 -22.98292 -21.90357 -20.26753 -19.48515 -18.86339 -18.36059 -17.95776 -16.96630 -16.50378 -16.34935 -16.15833 -15.45917 -15.06597 -14.84801 -14.69177 -14.25175 -14.01995 -13.99658 -13.71223 -13.42074 -13.14332 -13.10206 -13.02897 -12.63429 -12.50601 -12.17305 -11.98872 -11.80936 -11.76325 -11.65623 -11.54037 -11.37029 -11.33578 -10.76243 -10.73193 -9.79922 -8.89284 -8.28915 -6.35111 1.37844 1.41879 1.53977 1.59613 1.90786 2.38532 2.98064 3.06093 3.48346 3.77120 3.82280 3.90981 4.03692 4.07295 4.16141 4.20582 4.23071 4.28407 4.35129 4.49414 4.59606 4.74118 4.79710 4.85377 4.88936 4.93273 4.94710 4.98390 5.00031 5.00693 5.05615 5.16328 5.28170 5.49387 5.56165 5.58033 5.66246 6.27890 6.32425 6.37370 6.53521 6.73321 7.16132 7.29383 8.88955 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.004052 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.830916 B = 6907.807640 C = 7257.641730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.235 1.235 7 C -0.542 4.542 8 H 0.017 0.983 9 C -0.006 4.006 10 C -0.079 4.079 11 C -0.126 4.126 12 C 0.512 3.488 13 O -0.591 6.591 14 N -0.612 5.612 15 C 0.062 3.938 16 C 0.071 3.929 17 N -0.585 5.585 18 C 0.094 3.906 19 C -0.161 4.161 20 C 0.144 3.856 21 C -0.154 4.154 22 C 0.079 3.921 23 H 0.267 0.733 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.034 0.966 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.971 -6.921 1.058 30.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.158 1.158 7 C -0.580 4.580 8 H 0.035 0.965 9 C -0.044 4.044 10 C -0.118 4.118 11 C -0.165 4.165 12 C 0.302 3.698 13 O -0.472 6.472 14 N -0.346 5.346 15 C -0.060 4.060 16 C -0.057 4.057 17 N -0.306 5.306 18 C -0.035 4.035 19 C -0.202 4.202 20 C 0.040 3.960 21 C -0.194 4.194 22 C -0.048 4.048 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 29.701 -7.192 1.342 30.588 hybrid contribution -1.768 -0.058 -0.501 1.838 sum 27.933 -7.249 0.841 28.871 Atomic orbital electron populations 1.70112 1.08748 1.28351 1.52585 1.26220 0.95759 1.04193 0.93718 0.85474 0.79677 0.76875 0.79480 1.18762 1.21125 1.15775 1.21546 0.92700 0.92822 1.50960 0.96490 1.19526 0.93480 0.94015 0.97359 1.21035 0.93425 0.97322 0.99971 1.21712 0.96242 0.92577 1.05996 1.21181 0.81842 0.92140 0.74646 1.90665 1.56419 1.48249 1.51874 1.48900 1.04926 1.08030 1.72749 1.23305 0.91813 0.90557 1.00337 1.21734 0.98181 0.90529 0.95264 1.56494 1.39910 1.04935 1.29293 1.21259 0.94036 0.93706 0.94494 1.22144 1.00343 1.01568 0.96152 1.20485 0.95710 0.83130 0.96635 1.22440 0.92755 1.04097 1.00084 1.21798 0.94692 1.00418 0.87861 0.92451 0.95067 0.95131 0.94777 0.94909 0.86904 0.86571 0.87487 0.87376 0.92492 0.87860 0.89137 0.92667 0.89591 0.94729 0.93386 0.90107 0.89298 0.88736 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.38 13.96 21.45 0.30 -62.08 16 2 C 0.00 -0.18 5.47 84.65 0.46 0.28 16 3 Si 0.96 44.03 27.47 68.60 1.88 45.92 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.23 -9.52 6.54 99.48 0.65 -8.87 16 7 C -0.54 -33.15 9.66 25.60 0.25 -32.90 16 8 H 0.02 1.17 7.99 -2.91 -0.02 1.14 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.08 -3.45 4.44 30.59 0.14 -3.31 16 11 C -0.13 -3.83 4.12 29.85 0.12 -3.71 16 12 C 0.51 16.78 7.72 87.66 0.68 17.45 16 13 O -0.59 -25.62 15.86 -3.02 -0.05 -25.66 16 14 N -0.61 -14.36 2.56 -796.22 -2.04 -16.40 16 15 C 0.06 0.89 5.93 85.91 0.51 1.40 16 16 C 0.07 0.97 5.97 86.79 0.52 1.49 16 17 N -0.59 -8.23 4.16 -914.87 -3.81 -12.04 16 18 C 0.09 1.56 6.02 86.82 0.52 2.08 16 19 C -0.16 -3.39 5.75 29.95 0.17 -3.22 16 20 C 0.14 3.13 2.55 44.37 0.11 3.24 16 21 C -0.15 -1.98 5.24 30.41 0.16 -1.82 16 22 C 0.08 0.79 5.41 86.20 0.47 1.25 16 23 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 24 H 0.03 1.39 7.20 -2.38 -0.02 1.37 16 25 H 0.03 1.34 7.57 -2.38 -0.02 1.32 16 26 H 0.03 1.61 8.10 -2.39 -0.02 1.59 16 27 H 0.03 1.56 8.10 -2.39 -0.02 1.54 16 28 H 0.11 2.86 8.02 -2.39 -0.02 2.84 16 29 H 0.12 2.88 7.76 -2.39 -0.02 2.86 16 30 H 0.11 1.10 5.36 -2.39 -0.01 1.09 16 31 H 0.11 1.33 6.27 -2.39 -0.01 1.32 16 32 H 0.06 0.98 7.68 -2.39 -0.02 0.96 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.06 7.78 -2.38 -0.02 1.04 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.33 7.77 -2.39 -0.02 1.31 16 39 H 0.08 0.96 6.38 -2.39 -0.02 0.95 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.09 0.63 7.99 -2.39 -0.02 0.61 16 42 H 0.09 0.71 8.12 -2.38 -0.02 0.69 16 Total: -1.00 -79.93 318.18 1.44 -78.49 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.93 Total: 9.72 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 4.23 Total: -17.94 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -5.54 Total: -90.52 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal Total: -79.93 1.44 -78.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594349430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.349 kcal (2) G-P(sol) polarization free energy of solvation -79.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds