Wall clock time and date at job start Mon Mar 30 2020 05:54:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31002 * 1
3 3 C 1.51297 * 120.80700 * 2 1
4 4 C 1.53398 * 108.42246 * 232.93325 * 3 2 1
5 5 N 1.46854 * 108.77436 * 310.57371 * 4 3 2
6 6 C 1.34781 * 120.38160 * 237.61895 * 5 4 3
7 7 O 1.21275 * 119.99676 * 0.02562 * 6 5 4
8 8 C 1.50703 * 119.99971 * 180.02562 * 6 5 4
9 9 H 1.09002 * 109.47083 * 320.00492 * 8 6 5
10 10 N 1.46898 * 109.47113 * 200.00293 * 8 6 5
11 11 C 1.53000 * 109.46801 * 80.00207 * 8 6 5
12 12 C 1.52997 * 109.47060 * 184.99876 * 11 8 6
13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 8
14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11
15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12
16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12
17 17 N 1.31511 * 120.00113 * 179.97438 * 16 14 13
18 18 Si 1.86798 * 119.99923 * 0.02562 * 16 14 13
19 19 H 1.48498 * 109.47375 * 89.99678 * 18 16 14
20 20 H 1.48508 * 109.47196 * 209.99673 * 18 16 14
21 21 H 1.48504 * 109.47051 * 329.99297 * 18 16 14
22 22 C 1.46859 * 119.23774 * 57.89803 * 5 4 3
23 23 C 1.51292 * 120.80241 * 179.97438 * 2 1 3
24 24 H 1.08000 * 119.99746 * 0.02562 * 1 2 3
25 25 H 1.07994 * 120.00466 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.67359 * 113.20316 * 3 2 1
27 27 H 1.09000 * 109.67352 * 352.66759 * 3 2 1
28 28 H 1.09000 * 109.58409 * 190.78554 * 4 3 2
29 29 H 1.08997 * 109.58240 * 70.36244 * 4 3 2
30 30 H 1.00899 * 111.00057 * 300.00501 * 10 8 6
31 31 H 1.00902 * 110.99515 * 63.95638 * 10 8 6
32 32 H 1.09002 * 109.47398 * 305.00045 * 11 8 6
33 33 H 1.09001 * 109.47194 * 65.00225 * 11 8 6
34 34 H 1.09002 * 109.47153 * 300.00319 * 12 11 8
35 35 H 1.08998 * 109.47533 * 59.99948 * 12 11 8
36 36 H 1.09002 * 109.47103 * 300.00247 * 13 12 11
37 37 H 1.09001 * 109.47066 * 60.00169 * 13 12 11
38 38 H 0.97008 * 120.00167 * 179.97438 * 17 16 14
39 39 H 1.09004 * 109.58819 * 61.88940 * 22 5 4
40 40 H 1.09003 * 109.58713 * 182.31215 * 22 5 4
41 41 H 1.08993 * 109.67477 * 246.79871 * 23 2 1
42 42 H 1.08994 * 109.67872 * 7.34137 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0849 1.2995 0.0000
4 6 3.0866 1.2666 -1.1613
5 7 3.8276 -0.0003 -1.1106
6 6 5.1723 -0.0003 -1.0192
7 8 5.7772 1.0500 -0.9779
8 6 5.9240 -1.3055 -0.9683
9 1 5.3802 -2.0139 -0.3434
10 7 7.2607 -1.0789 -0.4026
11 6 6.0583 -1.8721 -2.3832
12 6 6.7103 -3.2547 -2.3191
13 6 6.8452 -3.8211 -3.7339
14 6 7.4881 -5.1826 -3.6709
15 1 7.7716 -5.6023 -2.7170
16 6 7.7132 -5.8931 -4.8308
17 7 8.2746 -7.0811 -4.7758
18 14 7.2221 -5.1677 -6.4807
19 1 8.3559 -4.3846 -7.0344
20 1 6.8727 -6.2642 -7.4193
21 1 6.0472 -4.2776 -6.3000
22 6 3.0869 -1.2672 -1.1668
23 6 2.0848 -1.2995 0.0006
24 1 -0.5400 0.9353 -0.0004
25 1 -0.5400 -0.9352 -0.0004
26 1 2.6201 1.4076 0.9433
27 1 1.3985 2.1360 -0.1310
28 1 3.7820 2.1007 -1.0677
29 1 2.5511 1.3391 -2.1078
30 1 7.7850 -0.4252 -0.9645
31 1 7.1998 -0.7656 0.5546
32 1 5.0704 -1.9569 -2.8360
33 1 6.6774 -1.2060 -2.9841
34 1 7.6983 -3.1699 -1.8664
35 1 6.0914 -3.9209 -1.7182
36 1 5.8575 -3.9058 -4.1871
37 1 7.4646 -3.1548 -4.3345
38 1 8.4327 -7.5812 -5.5919
39 1 2.5514 -1.3358 -2.1137
40 1 3.7826 -2.1015 -1.0769
41 1 2.6200 -1.4072 0.9439
42 1 1.3984 -2.1361 -0.1302
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594452222.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:54:47
Heat of formation + Delta-G solvation = -35.636720 kcal
Electronic energy + Delta-G solvation = -20494.446444 eV
Core-core repulsion = 17473.916103 eV
Total energy + Delta-G solvation = -3020.530342 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.55585 -37.95058 -35.90371 -34.21624 -33.36912 -31.72100 -31.52265 -28.87249
-28.09098 -25.48477 -23.84967 -23.37296 -21.74236 -20.04044 -19.81132 -18.30589
-17.24026 -16.68638 -16.31514 -15.95939 -15.27478 -15.11527 -14.68814 -14.24447
-14.19479 -14.02457 -13.90982 -13.25353 -13.11535 -12.84390 -12.56089 -12.31454
-11.95065 -11.76950 -11.64447 -11.35525 -11.24568 -10.90891 -10.81683 -10.70202
-10.24962 -9.87894 -9.66211 -9.63884 -9.47841 -9.12995 -8.76898 -8.61355
-8.48570 -5.99258 -3.96379 1.87399 2.50194 2.80545 3.33855 3.40889
3.44325 4.25770 4.33241 4.49412 4.49767 4.63879 4.70553 4.89449
4.92305 5.00535 5.14000 5.21965 5.29362 5.34115 5.35169 5.46484
5.48707 5.58986 5.60749 5.70421 5.80790 5.97257 6.22721 6.28539
6.30857 6.49888 6.64997 6.77555 7.01512 7.02698 7.23867 7.41141
7.47221 7.54299 7.85841 8.01180 8.60837 9.07257 9.63890 11.14426
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.023461 B = 0.004081 C = 0.003799
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.204538 B = 6859.753865 C = 7369.251175
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.122 4.122
3 C -0.099 4.099
4 C 0.111 3.889
5 N -0.610 5.610
6 C 0.484 3.516
7 O -0.551 6.551
8 C 0.077 3.923
9 H 0.103 0.897
10 N -0.811 5.811
11 C -0.108 4.108
12 C -0.092 4.092
13 C -0.016 4.016
14 C -0.516 4.516
15 H 0.072 0.928
16 C 0.064 3.936
17 N -0.906 5.906
18 Si 0.879 3.121
19 H -0.278 1.278
20 H -0.289 1.289
21 H -0.267 1.267
22 C 0.104 3.896
23 C -0.103 4.103
24 H 0.097 0.903
25 H 0.100 0.900
26 H 0.075 0.925
27 H 0.079 0.921
28 H 0.094 0.906
29 H 0.068 0.932
30 H 0.350 0.650
31 H 0.339 0.661
32 H 0.063 0.937
33 H 0.063 0.937
34 H 0.069 0.931
35 H 0.051 0.949
36 H 0.012 0.988
37 H 0.009 0.991
38 H 0.262 0.738
39 H 0.076 0.924
40 H 0.100 0.900
41 H 0.078 0.922
42 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.371 15.922 10.144 24.345
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.122 4.122
3 C -0.137 4.137
4 C -0.012 4.012
5 N -0.343 5.343
6 C 0.272 3.728
7 O -0.429 6.429
8 C -0.039 4.039
9 H 0.120 0.880
10 N -0.339 5.339
11 C -0.147 4.147
12 C -0.130 4.130
13 C -0.053 4.053
14 C -0.554 4.554
15 H 0.090 0.910
16 C -0.136 4.136
17 N -0.545 5.545
18 Si 0.707 3.293
19 H -0.204 1.204
20 H -0.215 1.215
21 H -0.191 1.191
22 C -0.019 4.019
23 C -0.141 4.141
24 H 0.116 0.884
25 H 0.118 0.882
26 H 0.093 0.907
27 H 0.097 0.903
28 H 0.112 0.888
29 H 0.086 0.914
30 H 0.164 0.836
31 H 0.151 0.849
32 H 0.081 0.919
33 H 0.081 0.919
34 H 0.088 0.912
35 H 0.070 0.930
36 H 0.030 0.970
37 H 0.027 0.973
38 H 0.072 0.928
39 H 0.094 0.906
40 H 0.118 0.882
41 H 0.096 0.904
42 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -14.834 15.545 9.917 23.665
hybrid contribution -0.756 1.275 -0.837 1.702
sum -15.589 16.820 9.079 24.665
Atomic orbital electron populations
1.23662 0.94830 1.01995 1.02446 1.21853 0.95029 0.95650 0.99717
1.21183 0.97829 0.95301 0.99432 1.21565 0.94354 0.87399 0.97874
1.48184 1.06115 1.07060 1.72968 1.22565 0.82082 0.93528 0.74671
1.90651 1.67621 1.33960 1.50645 1.21779 0.89952 0.92155 1.00018
0.87974 1.59059 1.13082 1.54997 1.06783 1.21721 1.01487 0.99600
0.91865 1.21366 1.00643 0.91582 0.99363 1.19603 0.96284 0.96561
0.92885 1.21175 1.39123 1.00137 0.94981 0.90980 1.25042 0.94753
0.94726 0.99098 1.69922 1.43981 1.12381 1.28231 0.86786 0.79518
0.78854 0.84129 1.20367 1.21500 1.19129 1.22010 0.95049 0.86143
0.98674 1.21306 0.98076 0.95390 0.99292 0.88449 0.88219 0.90651
0.90264 0.88813 0.91372 0.83596 0.84923 0.91861 0.91861 0.91204
0.93043 0.97005 0.97260 0.92848 0.90582 0.88232 0.90372 0.89762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.37 13.99 29.01 0.41 -0.97 16
2 C -0.12 -0.99 5.31 -100.48 -0.53 -1.52 16
3 C -0.10 -0.81 6.20 -27.38 -0.17 -0.98 16
4 C 0.11 1.10 6.44 -3.64 -0.02 1.07 16
5 N -0.61 -6.78 2.90 -172.32 -0.50 -7.28 16
6 C 0.48 6.55 6.93 -10.98 -0.08 6.47 16
7 O -0.55 -9.01 15.63 5.56 0.09 -8.92 16
8 C 0.08 1.01 2.29 -68.86 -0.16 0.85 16
9 H 0.10 1.21 6.61 -51.93 -0.34 0.87 16
10 N -0.81 -10.88 8.44 -5.65 -0.05 -10.93 16
11 C -0.11 -1.68 4.56 -26.73 -0.12 -1.81 16
12 C -0.09 -1.77 5.04 -26.74 -0.13 -1.91 16
13 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16
14 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16
15 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16
16 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16
17 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16
18 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16
19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16
20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16
22 C 0.10 0.96 5.68 -3.38 -0.02 0.94 16
23 C -0.10 -0.81 6.22 -27.13 -0.17 -0.98 16
24 H 0.10 0.61 7.91 -52.49 -0.42 0.19 16
25 H 0.10 0.64 7.91 -52.49 -0.42 0.22 16
26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
27 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16
28 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16
29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
30 H 0.35 4.87 8.58 -39.29 -0.34 4.53 16
31 H 0.34 3.97 9.06 -39.29 -0.36 3.62 16
32 H 0.06 0.91 7.10 -51.93 -0.37 0.54 16
33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
34 H 0.07 1.43 7.75 -51.93 -0.40 1.02 16
35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16
36 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16
37 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16
38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16
39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
40 H 0.10 0.93 5.00 -51.93 -0.26 0.67 16
41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
42 H 0.08 0.56 7.88 -51.93 -0.41 0.15 16
LS Contribution 333.55 15.07 5.03 5.03
Total: -1.00 -32.78 333.55 -7.84 -40.62
By element:
Atomic # 1 Polarization: 11.29 SS G_CDS: -6.97 Total: 4.32 kcal
Atomic # 6 Polarization: -11.13 SS G_CDS: -1.54 Total: -12.68 kcal
Atomic # 7 Polarization: -45.90 SS G_CDS: 0.23 Total: -45.67 kcal
Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -32.78 -7.84 -40.62 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594452222.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.985 kcal
(2) G-P(sol) polarization free energy of solvation -32.783 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds