Wall clock time and date at job start Mon Mar 30 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51297 * 120.80700 * 2 1 4 4 C 1.53398 * 108.42246 * 232.93325 * 3 2 1 5 5 N 1.46854 * 108.77436 * 310.57371 * 4 3 2 6 6 C 1.34781 * 120.38160 * 237.61895 * 5 4 3 7 7 O 1.21275 * 119.99676 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99971 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.47083 * 320.00492 * 8 6 5 10 10 N 1.46898 * 109.47113 * 200.00293 * 8 6 5 11 11 C 1.53000 * 109.46801 * 80.00207 * 8 6 5 12 12 C 1.52997 * 109.47060 * 184.99876 * 11 8 6 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 8 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00113 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99923 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47375 * 89.99678 * 18 16 14 20 20 H 1.48508 * 109.47196 * 209.99673 * 18 16 14 21 21 H 1.48504 * 109.47051 * 329.99297 * 18 16 14 22 22 C 1.46859 * 119.23774 * 57.89803 * 5 4 3 23 23 C 1.51292 * 120.80241 * 179.97438 * 2 1 3 24 24 H 1.08000 * 119.99746 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00466 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.67359 * 113.20316 * 3 2 1 27 27 H 1.09000 * 109.67352 * 352.66759 * 3 2 1 28 28 H 1.09000 * 109.58409 * 190.78554 * 4 3 2 29 29 H 1.08997 * 109.58240 * 70.36244 * 4 3 2 30 30 H 1.00899 * 111.00057 * 300.00501 * 10 8 6 31 31 H 1.00902 * 110.99515 * 63.95638 * 10 8 6 32 32 H 1.09002 * 109.47398 * 305.00045 * 11 8 6 33 33 H 1.09001 * 109.47194 * 65.00225 * 11 8 6 34 34 H 1.09002 * 109.47153 * 300.00319 * 12 11 8 35 35 H 1.08998 * 109.47533 * 59.99948 * 12 11 8 36 36 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 37 37 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 38 38 H 0.97008 * 120.00167 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.58819 * 61.88940 * 22 5 4 40 40 H 1.09003 * 109.58713 * 182.31215 * 22 5 4 41 41 H 1.08993 * 109.67477 * 246.79871 * 23 2 1 42 42 H 1.08994 * 109.67872 * 7.34137 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0849 1.2995 0.0000 4 6 3.0866 1.2666 -1.1613 5 7 3.8276 -0.0003 -1.1106 6 6 5.1723 -0.0003 -1.0192 7 8 5.7772 1.0500 -0.9779 8 6 5.9240 -1.3055 -0.9683 9 1 5.3802 -2.0139 -0.3434 10 7 7.2607 -1.0789 -0.4026 11 6 6.0583 -1.8721 -2.3832 12 6 6.7103 -3.2547 -2.3191 13 6 6.8452 -3.8211 -3.7339 14 6 7.4881 -5.1826 -3.6709 15 1 7.7716 -5.6023 -2.7170 16 6 7.7132 -5.8931 -4.8308 17 7 8.2746 -7.0811 -4.7758 18 14 7.2221 -5.1677 -6.4807 19 1 8.3559 -4.3846 -7.0344 20 1 6.8727 -6.2642 -7.4193 21 1 6.0472 -4.2776 -6.3000 22 6 3.0869 -1.2672 -1.1668 23 6 2.0848 -1.2995 0.0006 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 2.6201 1.4076 0.9433 27 1 1.3985 2.1360 -0.1310 28 1 3.7820 2.1007 -1.0677 29 1 2.5511 1.3391 -2.1078 30 1 7.7850 -0.4252 -0.9645 31 1 7.1998 -0.7656 0.5546 32 1 5.0704 -1.9569 -2.8360 33 1 6.6774 -1.2060 -2.9841 34 1 7.6983 -3.1699 -1.8664 35 1 6.0914 -3.9209 -1.7182 36 1 5.8575 -3.9058 -4.1871 37 1 7.4646 -3.1548 -4.3345 38 1 8.4327 -7.5812 -5.5919 39 1 2.5514 -1.3358 -2.1137 40 1 3.7826 -2.1015 -1.0769 41 1 2.6200 -1.4072 0.9439 42 1 1.3984 -2.1361 -0.1302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594452222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:47 Heat of formation + Delta-G solvation = -35.636720 kcal Electronic energy + Delta-G solvation = -20494.446444 eV Core-core repulsion = 17473.916103 eV Total energy + Delta-G solvation = -3020.530342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55585 -37.95058 -35.90371 -34.21624 -33.36912 -31.72100 -31.52265 -28.87249 -28.09098 -25.48477 -23.84967 -23.37296 -21.74236 -20.04044 -19.81132 -18.30589 -17.24026 -16.68638 -16.31514 -15.95939 -15.27478 -15.11527 -14.68814 -14.24447 -14.19479 -14.02457 -13.90982 -13.25353 -13.11535 -12.84390 -12.56089 -12.31454 -11.95065 -11.76950 -11.64447 -11.35525 -11.24568 -10.90891 -10.81683 -10.70202 -10.24962 -9.87894 -9.66211 -9.63884 -9.47841 -9.12995 -8.76898 -8.61355 -8.48570 -5.99258 -3.96379 1.87399 2.50194 2.80545 3.33855 3.40889 3.44325 4.25770 4.33241 4.49412 4.49767 4.63879 4.70553 4.89449 4.92305 5.00535 5.14000 5.21965 5.29362 5.34115 5.35169 5.46484 5.48707 5.58986 5.60749 5.70421 5.80790 5.97257 6.22721 6.28539 6.30857 6.49888 6.64997 6.77555 7.01512 7.02698 7.23867 7.41141 7.47221 7.54299 7.85841 8.01180 8.60837 9.07257 9.63890 11.14426 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.004081 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.204538 B = 6859.753865 C = 7369.251175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.099 4.099 4 C 0.111 3.889 5 N -0.610 5.610 6 C 0.484 3.516 7 O -0.551 6.551 8 C 0.077 3.923 9 H 0.103 0.897 10 N -0.811 5.811 11 C -0.108 4.108 12 C -0.092 4.092 13 C -0.016 4.016 14 C -0.516 4.516 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.104 3.896 23 C -0.103 4.103 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.350 0.650 31 H 0.339 0.661 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.262 0.738 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.371 15.922 10.144 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.122 4.122 3 C -0.137 4.137 4 C -0.012 4.012 5 N -0.343 5.343 6 C 0.272 3.728 7 O -0.429 6.429 8 C -0.039 4.039 9 H 0.120 0.880 10 N -0.339 5.339 11 C -0.147 4.147 12 C -0.130 4.130 13 C -0.053 4.053 14 C -0.554 4.554 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.019 4.019 23 C -0.141 4.141 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.834 15.545 9.917 23.665 hybrid contribution -0.756 1.275 -0.837 1.702 sum -15.589 16.820 9.079 24.665 Atomic orbital electron populations 1.23662 0.94830 1.01995 1.02446 1.21853 0.95029 0.95650 0.99717 1.21183 0.97829 0.95301 0.99432 1.21565 0.94354 0.87399 0.97874 1.48184 1.06115 1.07060 1.72968 1.22565 0.82082 0.93528 0.74671 1.90651 1.67621 1.33960 1.50645 1.21779 0.89952 0.92155 1.00018 0.87974 1.59059 1.13082 1.54997 1.06783 1.21721 1.01487 0.99600 0.91865 1.21366 1.00643 0.91582 0.99363 1.19603 0.96284 0.96561 0.92885 1.21175 1.39123 1.00137 0.94981 0.90980 1.25042 0.94753 0.94726 0.99098 1.69922 1.43981 1.12381 1.28231 0.86786 0.79518 0.78854 0.84129 1.20367 1.21500 1.19129 1.22010 0.95049 0.86143 0.98674 1.21306 0.98076 0.95390 0.99292 0.88449 0.88219 0.90651 0.90264 0.88813 0.91372 0.83596 0.84923 0.91861 0.91861 0.91204 0.93043 0.97005 0.97260 0.92848 0.90582 0.88232 0.90372 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 13.99 29.01 0.41 -0.97 16 2 C -0.12 -0.99 5.31 -100.48 -0.53 -1.52 16 3 C -0.10 -0.81 6.20 -27.38 -0.17 -0.98 16 4 C 0.11 1.10 6.44 -3.64 -0.02 1.07 16 5 N -0.61 -6.78 2.90 -172.32 -0.50 -7.28 16 6 C 0.48 6.55 6.93 -10.98 -0.08 6.47 16 7 O -0.55 -9.01 15.63 5.56 0.09 -8.92 16 8 C 0.08 1.01 2.29 -68.86 -0.16 0.85 16 9 H 0.10 1.21 6.61 -51.93 -0.34 0.87 16 10 N -0.81 -10.88 8.44 -5.65 -0.05 -10.93 16 11 C -0.11 -1.68 4.56 -26.73 -0.12 -1.81 16 12 C -0.09 -1.77 5.04 -26.74 -0.13 -1.91 16 13 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 14 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 15 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 18 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.10 0.96 5.68 -3.38 -0.02 0.94 16 23 C -0.10 -0.81 6.22 -27.13 -0.17 -0.98 16 24 H 0.10 0.61 7.91 -52.49 -0.42 0.19 16 25 H 0.10 0.64 7.91 -52.49 -0.42 0.22 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 28 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.35 4.87 8.58 -39.29 -0.34 4.53 16 31 H 0.34 3.97 9.06 -39.29 -0.36 3.62 16 32 H 0.06 0.91 7.10 -51.93 -0.37 0.54 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.43 7.75 -51.93 -0.40 1.02 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 37 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.93 5.00 -51.93 -0.26 0.67 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.56 7.88 -51.93 -0.41 0.15 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -32.78 333.55 -7.84 -40.62 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.97 Total: 4.32 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.54 Total: -12.68 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.23 Total: -45.67 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.78 -7.84 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594452222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.985 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds