Wall clock time and date at job start Mon Mar 30 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51297 * 120.80700 * 2 1 4 4 C 1.53398 * 108.42246 * 232.93325 * 3 2 1 5 5 N 1.46854 * 108.77436 * 310.57371 * 4 3 2 6 6 C 1.34781 * 120.38160 * 237.61895 * 5 4 3 7 7 O 1.21275 * 119.99676 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99971 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.47083 * 320.00492 * 8 6 5 10 10 N 1.46898 * 109.47113 * 200.00293 * 8 6 5 11 11 C 1.53000 * 109.46801 * 80.00207 * 8 6 5 12 12 C 1.52997 * 109.47060 * 184.99876 * 11 8 6 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 8 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00113 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99923 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47375 * 89.99678 * 18 16 14 20 20 H 1.48508 * 109.47196 * 209.99673 * 18 16 14 21 21 H 1.48504 * 109.47051 * 329.99297 * 18 16 14 22 22 C 1.46859 * 119.23774 * 57.89803 * 5 4 3 23 23 C 1.51292 * 120.80241 * 179.97438 * 2 1 3 24 24 H 1.08000 * 119.99746 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00466 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.67359 * 113.20316 * 3 2 1 27 27 H 1.09000 * 109.67352 * 352.66759 * 3 2 1 28 28 H 1.09000 * 109.58409 * 190.78554 * 4 3 2 29 29 H 1.08997 * 109.58240 * 70.36244 * 4 3 2 30 30 H 1.00899 * 111.00057 * 300.00501 * 10 8 6 31 31 H 1.00902 * 110.99515 * 63.95638 * 10 8 6 32 32 H 1.09002 * 109.47398 * 305.00045 * 11 8 6 33 33 H 1.09001 * 109.47194 * 65.00225 * 11 8 6 34 34 H 1.09002 * 109.47153 * 300.00319 * 12 11 8 35 35 H 1.08998 * 109.47533 * 59.99948 * 12 11 8 36 36 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 37 37 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 38 38 H 0.97008 * 120.00167 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.58819 * 61.88940 * 22 5 4 40 40 H 1.09003 * 109.58713 * 182.31215 * 22 5 4 41 41 H 1.08993 * 109.67477 * 246.79871 * 23 2 1 42 42 H 1.08994 * 109.67872 * 7.34137 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0849 1.2995 0.0000 4 6 3.0866 1.2666 -1.1613 5 7 3.8276 -0.0003 -1.1106 6 6 5.1723 -0.0003 -1.0192 7 8 5.7772 1.0500 -0.9779 8 6 5.9240 -1.3055 -0.9683 9 1 5.3802 -2.0139 -0.3434 10 7 7.2607 -1.0789 -0.4026 11 6 6.0583 -1.8721 -2.3832 12 6 6.7103 -3.2547 -2.3191 13 6 6.8452 -3.8211 -3.7339 14 6 7.4881 -5.1826 -3.6709 15 1 7.7716 -5.6023 -2.7170 16 6 7.7132 -5.8931 -4.8308 17 7 8.2746 -7.0811 -4.7758 18 14 7.2221 -5.1677 -6.4807 19 1 8.3559 -4.3846 -7.0344 20 1 6.8727 -6.2642 -7.4193 21 1 6.0472 -4.2776 -6.3000 22 6 3.0869 -1.2672 -1.1668 23 6 2.0848 -1.2995 0.0006 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 2.6201 1.4076 0.9433 27 1 1.3985 2.1360 -0.1310 28 1 3.7820 2.1007 -1.0677 29 1 2.5511 1.3391 -2.1078 30 1 7.7850 -0.4252 -0.9645 31 1 7.1998 -0.7656 0.5546 32 1 5.0704 -1.9569 -2.8360 33 1 6.6774 -1.2060 -2.9841 34 1 7.6983 -3.1699 -1.8664 35 1 6.0914 -3.9209 -1.7182 36 1 5.8575 -3.9058 -4.1871 37 1 7.4646 -3.1548 -4.3345 38 1 8.4327 -7.5812 -5.5919 39 1 2.5514 -1.3358 -2.1137 40 1 3.7826 -2.1015 -1.0769 41 1 2.6200 -1.4072 0.9439 42 1 1.3984 -2.1361 -0.1302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594452222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:46 Heat of formation + Delta-G solvation = -57.845987 kcal Electronic energy + Delta-G solvation = -20495.409511 eV Core-core repulsion = 17473.916103 eV Total energy + Delta-G solvation = -3021.493408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51410 -38.76911 -37.23287 -35.25006 -34.94741 -33.37476 -32.40087 -30.03552 -29.25067 -26.83083 -24.63103 -24.51901 -23.00037 -21.69115 -20.68470 -19.16332 -18.84203 -18.11224 -17.30183 -17.05721 -16.29086 -16.04991 -15.86933 -15.72730 -15.14928 -14.98602 -14.82108 -14.73236 -14.34861 -13.97228 -13.73878 -13.59157 -13.25845 -13.00054 -12.88947 -12.40760 -12.33671 -12.27403 -11.97222 -11.74779 -11.64366 -11.43367 -11.38193 -11.23769 -11.03427 -10.72160 -10.31957 -9.70058 -9.55271 -8.25176 -6.28356 1.27778 1.38361 1.39206 1.49773 1.51436 1.93432 2.39370 3.10414 3.35221 3.58589 3.72450 3.81793 3.93848 4.01891 4.11157 4.22987 4.28040 4.42596 4.47720 4.52973 4.56830 4.72056 4.75716 4.85838 4.90923 4.95615 5.03704 5.06046 5.08027 5.12063 5.20968 5.45713 5.65437 5.71571 5.72198 5.76671 5.92800 6.02366 6.29305 6.35205 6.44666 6.80486 7.01486 7.36030 8.91897 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.004081 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.204538 B = 6859.753865 C = 7369.251175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C -0.093 4.093 4 C 0.108 3.892 5 N -0.604 5.604 6 C 0.484 3.516 7 O -0.585 6.585 8 C 0.084 3.916 9 H 0.119 0.881 10 N -0.819 5.819 11 C -0.097 4.097 12 C -0.081 4.081 13 C -0.014 4.014 14 C -0.528 4.528 15 H 0.031 0.969 16 C 0.001 3.999 17 N -0.954 5.954 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.243 1.243 22 C 0.098 3.902 23 C -0.099 4.099 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.346 0.654 31 H 0.348 0.652 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.010 0.990 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.767 17.183 9.577 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.141 4.141 3 C -0.130 4.130 4 C -0.015 4.015 5 N -0.336 5.336 6 C 0.271 3.729 7 O -0.465 6.465 8 C -0.032 4.032 9 H 0.137 0.863 10 N -0.348 5.348 11 C -0.135 4.135 12 C -0.119 4.119 13 C -0.052 4.052 14 C -0.566 4.566 15 H 0.050 0.950 16 C -0.195 4.195 17 N -0.595 5.595 18 Si 0.774 3.226 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.167 1.167 22 C -0.024 4.024 23 C -0.137 4.137 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.272 16.809 9.375 25.860 hybrid contribution -0.033 0.828 -0.575 1.009 sum -17.305 17.637 8.800 26.229 Atomic orbital electron populations 1.23847 0.94531 1.02922 1.00499 1.21876 0.95430 0.95412 1.01378 1.21119 0.97547 0.96303 0.98069 1.21662 0.94285 0.86247 0.99271 1.48264 1.05547 1.08350 1.71469 1.22475 0.82852 0.92889 0.74662 1.90639 1.68509 1.34890 1.52510 1.21666 0.90128 0.92488 0.98894 0.86315 1.59075 1.13295 1.55009 1.07421 1.21534 1.01674 0.96898 0.93441 1.21164 1.00374 0.93780 0.96558 1.19578 0.96010 0.93850 0.95734 1.21550 1.39191 1.02408 0.93490 0.95032 1.26039 0.94734 0.95033 1.03705 1.70081 1.45670 1.14187 1.29607 0.85655 0.80053 0.78424 0.78468 1.19664 1.20986 1.16677 1.22190 0.95262 0.85068 0.99843 1.21286 0.97924 0.96035 0.98427 0.87528 0.87351 0.91595 0.88614 0.90515 0.90334 0.84013 0.83899 0.90195 0.92738 0.92861 0.92695 0.95927 0.97136 0.92626 0.89712 0.88251 0.90716 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 13.99 67.78 0.95 -1.07 16 2 C -0.14 -1.90 5.31 -16.11 -0.09 -1.99 16 3 C -0.09 -1.32 6.20 30.17 0.19 -1.14 16 4 C 0.11 1.97 6.44 86.45 0.56 2.53 16 5 N -0.60 -12.40 2.90 -817.49 -2.37 -14.77 16 6 C 0.48 12.52 6.93 87.66 0.61 13.13 16 7 O -0.58 -18.91 15.63 -3.01 -0.05 -18.95 16 8 C 0.08 2.10 2.29 44.17 0.10 2.20 16 9 H 0.12 2.58 6.61 -2.39 -0.02 2.57 16 10 N -0.82 -21.50 8.44 -171.80 -1.45 -22.95 16 11 C -0.10 -2.85 4.56 30.59 0.14 -2.71 16 12 C -0.08 -3.06 5.04 30.59 0.15 -2.91 16 13 C -0.01 -0.67 4.04 29.84 0.12 -0.55 16 14 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 15 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 16 C 0.00 0.06 5.47 84.65 0.46 0.52 16 17 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 18 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 22 C 0.10 1.58 5.68 86.61 0.49 2.07 16 23 C -0.10 -1.31 6.22 30.34 0.19 -1.12 16 24 H 0.11 0.99 7.91 -2.91 -0.02 0.96 16 25 H 0.11 1.02 7.91 -2.91 -0.02 1.00 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.04 7.88 -2.39 -0.02 1.02 16 28 H 0.08 1.68 6.96 -2.39 -0.02 1.66 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.35 9.56 8.58 -89.69 -0.77 8.79 16 31 H 0.35 7.95 9.06 -89.69 -0.81 7.13 16 32 H 0.08 2.08 7.10 -2.39 -0.02 2.07 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 2.18 7.75 -2.39 -0.02 2.16 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 37 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 38 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.10 1.59 5.00 -2.39 -0.01 1.58 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 1.02 7.88 -2.39 -0.02 1.00 16 Total: -1.00 -71.18 333.55 1.81 -69.38 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.63 Total: 22.73 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.12 Total: -21.58 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -3.52 Total: -98.09 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -71.18 1.81 -69.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594452222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.529 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds