Wall clock time and date at job start Mon Mar 30 2020 05:54:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31002 * 1
3 3 C 1.51297 * 120.80700 * 2 1
4 4 C 1.53398 * 108.42246 * 232.93325 * 3 2 1
5 5 N 1.46854 * 108.77436 * 310.57371 * 4 3 2
6 6 C 1.34781 * 120.38160 * 237.61895 * 5 4 3
7 7 O 1.21275 * 119.99676 * 0.02562 * 6 5 4
8 8 C 1.50703 * 119.99971 * 180.02562 * 6 5 4
9 9 H 1.09002 * 109.47083 * 320.00492 * 8 6 5
10 10 N 1.46898 * 109.47113 * 200.00293 * 8 6 5
11 11 C 1.53000 * 109.46801 * 80.00207 * 8 6 5
12 12 C 1.52997 * 109.47060 * 184.99876 * 11 8 6
13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 8
14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11
15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12
16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12
17 17 N 1.31511 * 120.00113 * 179.97438 * 16 14 13
18 18 Si 1.86798 * 119.99923 * 0.02562 * 16 14 13
19 19 H 1.48498 * 109.47375 * 89.99678 * 18 16 14
20 20 H 1.48508 * 109.47196 * 209.99673 * 18 16 14
21 21 H 1.48504 * 109.47051 * 329.99297 * 18 16 14
22 22 C 1.46859 * 119.23774 * 57.89803 * 5 4 3
23 23 C 1.51292 * 120.80241 * 179.97438 * 2 1 3
24 24 H 1.08000 * 119.99746 * 0.02562 * 1 2 3
25 25 H 1.07994 * 120.00466 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.67359 * 113.20316 * 3 2 1
27 27 H 1.09000 * 109.67352 * 352.66759 * 3 2 1
28 28 H 1.09000 * 109.58409 * 190.78554 * 4 3 2
29 29 H 1.08997 * 109.58240 * 70.36244 * 4 3 2
30 30 H 1.00899 * 111.00057 * 300.00501 * 10 8 6
31 31 H 1.00902 * 110.99515 * 63.95638 * 10 8 6
32 32 H 1.09002 * 109.47398 * 305.00045 * 11 8 6
33 33 H 1.09001 * 109.47194 * 65.00225 * 11 8 6
34 34 H 1.09002 * 109.47153 * 300.00319 * 12 11 8
35 35 H 1.08998 * 109.47533 * 59.99948 * 12 11 8
36 36 H 1.09002 * 109.47103 * 300.00247 * 13 12 11
37 37 H 1.09001 * 109.47066 * 60.00169 * 13 12 11
38 38 H 0.97008 * 120.00167 * 179.97438 * 17 16 14
39 39 H 1.09004 * 109.58819 * 61.88940 * 22 5 4
40 40 H 1.09003 * 109.58713 * 182.31215 * 22 5 4
41 41 H 1.08993 * 109.67477 * 246.79871 * 23 2 1
42 42 H 1.08994 * 109.67872 * 7.34137 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0849 1.2995 0.0000
4 6 3.0866 1.2666 -1.1613
5 7 3.8276 -0.0003 -1.1106
6 6 5.1723 -0.0003 -1.0192
7 8 5.7772 1.0500 -0.9779
8 6 5.9240 -1.3055 -0.9683
9 1 5.3802 -2.0139 -0.3434
10 7 7.2607 -1.0789 -0.4026
11 6 6.0583 -1.8721 -2.3832
12 6 6.7103 -3.2547 -2.3191
13 6 6.8452 -3.8211 -3.7339
14 6 7.4881 -5.1826 -3.6709
15 1 7.7716 -5.6023 -2.7170
16 6 7.7132 -5.8931 -4.8308
17 7 8.2746 -7.0811 -4.7758
18 14 7.2221 -5.1677 -6.4807
19 1 8.3559 -4.3846 -7.0344
20 1 6.8727 -6.2642 -7.4193
21 1 6.0472 -4.2776 -6.3000
22 6 3.0869 -1.2672 -1.1668
23 6 2.0848 -1.2995 0.0006
24 1 -0.5400 0.9353 -0.0004
25 1 -0.5400 -0.9352 -0.0004
26 1 2.6201 1.4076 0.9433
27 1 1.3985 2.1360 -0.1310
28 1 3.7820 2.1007 -1.0677
29 1 2.5511 1.3391 -2.1078
30 1 7.7850 -0.4252 -0.9645
31 1 7.1998 -0.7656 0.5546
32 1 5.0704 -1.9569 -2.8360
33 1 6.6774 -1.2060 -2.9841
34 1 7.6983 -3.1699 -1.8664
35 1 6.0914 -3.9209 -1.7182
36 1 5.8575 -3.9058 -4.1871
37 1 7.4646 -3.1548 -4.3345
38 1 8.4327 -7.5812 -5.5919
39 1 2.5514 -1.3358 -2.1137
40 1 3.7826 -2.1015 -1.0769
41 1 2.6200 -1.4072 0.9439
42 1 1.3984 -2.1361 -0.1302
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000594452222.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:54:46
Heat of formation + Delta-G solvation = -57.845987 kcal
Electronic energy + Delta-G solvation = -20495.409511 eV
Core-core repulsion = 17473.916103 eV
Total energy + Delta-G solvation = -3021.493408 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.51410 -38.76911 -37.23287 -35.25006 -34.94741 -33.37476 -32.40087 -30.03552
-29.25067 -26.83083 -24.63103 -24.51901 -23.00037 -21.69115 -20.68470 -19.16332
-18.84203 -18.11224 -17.30183 -17.05721 -16.29086 -16.04991 -15.86933 -15.72730
-15.14928 -14.98602 -14.82108 -14.73236 -14.34861 -13.97228 -13.73878 -13.59157
-13.25845 -13.00054 -12.88947 -12.40760 -12.33671 -12.27403 -11.97222 -11.74779
-11.64366 -11.43367 -11.38193 -11.23769 -11.03427 -10.72160 -10.31957 -9.70058
-9.55271 -8.25176 -6.28356 1.27778 1.38361 1.39206 1.49773 1.51436
1.93432 2.39370 3.10414 3.35221 3.58589 3.72450 3.81793 3.93848
4.01891 4.11157 4.22987 4.28040 4.42596 4.47720 4.52973 4.56830
4.72056 4.75716 4.85838 4.90923 4.95615 5.03704 5.06046 5.08027
5.12063 5.20968 5.45713 5.65437 5.71571 5.72198 5.76671 5.92800
6.02366 6.29305 6.35205 6.44666 6.80486 7.01486 7.36030 8.91897
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.023461 B = 0.004081 C = 0.003799
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.204538 B = 6859.753865 C = 7369.251175
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.141 4.141
3 C -0.093 4.093
4 C 0.108 3.892
5 N -0.604 5.604
6 C 0.484 3.516
7 O -0.585 6.585
8 C 0.084 3.916
9 H 0.119 0.881
10 N -0.819 5.819
11 C -0.097 4.097
12 C -0.081 4.081
13 C -0.014 4.014
14 C -0.528 4.528
15 H 0.031 0.969
16 C 0.001 3.999
17 N -0.954 5.954
18 Si 0.951 3.049
19 H -0.271 1.271
20 H -0.284 1.284
21 H -0.243 1.243
22 C 0.098 3.902
23 C -0.099 4.099
24 H 0.106 0.894
25 H 0.108 0.892
26 H 0.066 0.934
27 H 0.095 0.905
28 H 0.076 0.924
29 H 0.078 0.922
30 H 0.346 0.654
31 H 0.348 0.652
32 H 0.080 0.920
33 H 0.054 0.946
34 H 0.053 0.947
35 H 0.054 0.946
36 H 0.022 0.978
37 H 0.010 0.990
38 H 0.265 0.735
39 H 0.085 0.915
40 H 0.099 0.901
41 H 0.074 0.926
42 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.767 17.183 9.577 26.507
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.141 4.141
3 C -0.130 4.130
4 C -0.015 4.015
5 N -0.336 5.336
6 C 0.271 3.729
7 O -0.465 6.465
8 C -0.032 4.032
9 H 0.137 0.863
10 N -0.348 5.348
11 C -0.135 4.135
12 C -0.119 4.119
13 C -0.052 4.052
14 C -0.566 4.566
15 H 0.050 0.950
16 C -0.195 4.195
17 N -0.595 5.595
18 Si 0.774 3.226
19 H -0.197 1.197
20 H -0.210 1.210
21 H -0.167 1.167
22 C -0.024 4.024
23 C -0.137 4.137
24 H 0.125 0.875
25 H 0.126 0.874
26 H 0.084 0.916
27 H 0.114 0.886
28 H 0.095 0.905
29 H 0.097 0.903
30 H 0.160 0.840
31 H 0.161 0.839
32 H 0.098 0.902
33 H 0.073 0.927
34 H 0.071 0.929
35 H 0.073 0.927
36 H 0.041 0.959
37 H 0.029 0.971
38 H 0.074 0.926
39 H 0.103 0.897
40 H 0.117 0.883
41 H 0.093 0.907
42 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -17.272 16.809 9.375 25.860
hybrid contribution -0.033 0.828 -0.575 1.009
sum -17.305 17.637 8.800 26.229
Atomic orbital electron populations
1.23847 0.94531 1.02922 1.00499 1.21876 0.95430 0.95412 1.01378
1.21119 0.97547 0.96303 0.98069 1.21662 0.94285 0.86247 0.99271
1.48264 1.05547 1.08350 1.71469 1.22475 0.82852 0.92889 0.74662
1.90639 1.68509 1.34890 1.52510 1.21666 0.90128 0.92488 0.98894
0.86315 1.59075 1.13295 1.55009 1.07421 1.21534 1.01674 0.96898
0.93441 1.21164 1.00374 0.93780 0.96558 1.19578 0.96010 0.93850
0.95734 1.21550 1.39191 1.02408 0.93490 0.95032 1.26039 0.94734
0.95033 1.03705 1.70081 1.45670 1.14187 1.29607 0.85655 0.80053
0.78424 0.78468 1.19664 1.20986 1.16677 1.22190 0.95262 0.85068
0.99843 1.21286 0.97924 0.96035 0.98427 0.87528 0.87351 0.91595
0.88614 0.90515 0.90334 0.84013 0.83899 0.90195 0.92738 0.92861
0.92695 0.95927 0.97136 0.92626 0.89712 0.88251 0.90716 0.88264
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.02 13.99 67.78 0.95 -1.07 16
2 C -0.14 -1.90 5.31 -16.11 -0.09 -1.99 16
3 C -0.09 -1.32 6.20 30.17 0.19 -1.14 16
4 C 0.11 1.97 6.44 86.45 0.56 2.53 16
5 N -0.60 -12.40 2.90 -817.49 -2.37 -14.77 16
6 C 0.48 12.52 6.93 87.66 0.61 13.13 16
7 O -0.58 -18.91 15.63 -3.01 -0.05 -18.95 16
8 C 0.08 2.10 2.29 44.17 0.10 2.20 16
9 H 0.12 2.58 6.61 -2.39 -0.02 2.57 16
10 N -0.82 -21.50 8.44 -171.80 -1.45 -22.95 16
11 C -0.10 -2.85 4.56 30.59 0.14 -2.71 16
12 C -0.08 -3.06 5.04 30.59 0.15 -2.91 16
13 C -0.01 -0.67 4.04 29.84 0.12 -0.55 16
14 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16
15 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16
16 C 0.00 0.06 5.47 84.65 0.46 0.52 16
17 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16
18 Si 0.95 44.64 27.47 68.60 1.88 46.52 16
19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16
20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16
21 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16
22 C 0.10 1.58 5.68 86.61 0.49 2.07 16
23 C -0.10 -1.31 6.22 30.34 0.19 -1.12 16
24 H 0.11 0.99 7.91 -2.91 -0.02 0.96 16
25 H 0.11 1.02 7.91 -2.91 -0.02 1.00 16
26 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16
27 H 0.10 1.04 7.88 -2.39 -0.02 1.02 16
28 H 0.08 1.68 6.96 -2.39 -0.02 1.66 16
29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
30 H 0.35 9.56 8.58 -89.69 -0.77 8.79 16
31 H 0.35 7.95 9.06 -89.69 -0.81 7.13 16
32 H 0.08 2.08 7.10 -2.39 -0.02 2.07 16
33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
34 H 0.05 2.18 7.75 -2.39 -0.02 2.16 16
35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16
36 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16
37 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16
38 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16
39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16
40 H 0.10 1.59 5.00 -2.39 -0.01 1.58 16
41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.10 1.02 7.88 -2.39 -0.02 1.00 16
Total: -1.00 -71.18 333.55 1.81 -69.38
By element:
Atomic # 1 Polarization: 23.36 SS G_CDS: -0.63 Total: 22.73 kcal
Atomic # 6 Polarization: -25.70 SS G_CDS: 4.12 Total: -21.58 kcal
Atomic # 7 Polarization: -94.57 SS G_CDS: -3.52 Total: -98.09 kcal
Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.95 kcal
Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal
Total: -71.18 1.81 -69.38 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594452222.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.529 kcal
(2) G-P(sol) polarization free energy of solvation -71.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.846 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds