Wall clock time and date at job start Mon Mar 30 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47153 * 240.00388 * 3 2 1 5 5 H 1.48494 * 109.46852 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47067 * 120.00282 * 3 2 1 7 7 C 1.37878 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47167 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47167 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47307 * 304.99895 * 12 11 10 14 14 N 1.46896 * 109.47465 * 65.00178 * 12 11 10 15 15 C 1.50706 * 109.47066 * 185.00455 * 12 11 10 16 16 O 1.21283 * 119.99503 * 259.99830 * 15 12 11 17 17 N 1.34773 * 120.00081 * 79.72557 * 15 12 11 18 18 C 1.46506 * 119.99968 * 180.02562 * 17 15 12 19 19 H 1.09004 * 109.63486 * 325.41817 * 18 17 15 20 20 C 1.53023 * 109.64081 * 86.04902 * 18 17 15 21 21 C 1.50073 * 110.14222 * 169.12184 * 20 18 17 22 22 C 1.29448 * 124.07663 * 342.87033 * 21 20 18 23 23 C 1.50064 * 124.07479 * 0.46862 * 22 21 20 24 24 C 1.53027 * 110.14901 * 342.87254 * 23 22 21 25 25 H 0.97000 * 119.99846 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47281 * 60.00185 * 9 7 2 27 27 H 1.09002 * 109.47018 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47297 * 60.00503 * 10 9 7 29 29 H 1.08995 * 109.47210 * 300.00081 * 10 9 7 30 30 H 1.09003 * 109.46940 * 60.00184 * 11 10 9 31 31 H 1.08995 * 109.47266 * 300.00224 * 11 10 9 32 32 H 1.00900 * 110.99773 * 59.99397 * 14 12 11 33 33 H 1.00897 * 111.00727 * 183.95321 * 14 12 11 34 34 H 0.96998 * 120.00525 * 359.97438 * 17 15 12 35 35 H 1.08994 * 109.36197 * 289.32977 * 20 18 17 36 36 H 1.08997 * 109.35838 * 48.91804 * 20 18 17 37 37 H 1.07999 * 117.96207 * 162.89260 * 21 20 18 38 38 H 1.07993 * 117.95992 * 180.44806 * 22 21 20 39 39 H 1.08997 * 109.36039 * 222.66216 * 23 22 21 40 40 H 1.09004 * 109.36016 * 103.07440 * 23 22 21 41 41 H 1.09002 * 109.64056 * 289.74737 * 24 23 22 42 42 H 1.09003 * 109.81969 * 169.22529 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 1 3.1581 -6.0432 -0.8428 14 7 3.2386 -6.1418 1.2541 15 6 1.7251 -7.4516 -0.1239 16 8 1.5135 -8.1252 0.8623 17 7 1.2851 -7.8644 -1.3290 18 6 0.5560 -9.1295 -1.4488 19 1 0.9522 -9.8497 -0.7329 20 6 -0.9314 -8.8935 -1.1781 21 6 -1.7245 -10.1112 -1.5528 22 6 -1.2808 -11.0599 -2.3135 23 6 0.0922 -11.0796 -2.9189 24 6 0.7089 -9.6798 -2.8723 25 1 -0.4850 0.8401 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0451 -0.8897 31 1 0.8540 -5.0446 0.8903 32 1 2.6268 -6.2395 2.0506 33 1 3.9463 -6.8610 1.2513 34 1 1.4506 -7.3235 -2.1171 35 1 -1.0765 -8.6795 -0.1192 36 1 -1.2754 -8.0431 -1.7669 37 1 -2.7279 -10.2015 -1.1638 38 1 -1.9396 -11.8890 -2.5254 39 1 0.0255 -11.4107 -3.9552 40 1 0.7234 -11.7711 -2.3607 41 1 0.1904 -9.0275 -3.5750 42 1 1.7659 -9.7328 -3.1333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594454920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:16 Heat of formation + Delta-G solvation = -56.027974 kcal Electronic energy + Delta-G solvation = -19944.258600 eV Core-core repulsion = 16922.844027 eV Total energy + Delta-G solvation = -3021.414573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28025 -38.43815 -35.67732 -34.38224 -33.31515 -31.33270 -31.12611 -29.91046 -27.79940 -25.17074 -23.62832 -22.78658 -21.71251 -20.18138 -19.97812 -18.25712 -17.06428 -16.93194 -16.31027 -15.87642 -15.54300 -14.87562 -14.44664 -14.33558 -14.07118 -13.75592 -13.65413 -13.36217 -12.95116 -12.71579 -12.62027 -12.36029 -11.76944 -11.48010 -11.37026 -11.13688 -11.01262 -10.85868 -10.71354 -10.61150 -10.40730 -10.16898 -9.58909 -9.30983 -9.21166 -9.14029 -9.03426 -8.53517 -8.28101 -5.94058 -3.95729 2.02057 2.59143 3.09074 3.37336 3.41315 3.44294 4.37327 4.43786 4.50825 4.61655 4.64685 4.86531 4.97022 5.03903 5.13481 5.20369 5.25783 5.30808 5.41551 5.43458 5.50089 5.59993 5.79559 5.82519 5.94167 5.95556 6.14308 6.28963 6.42078 6.46145 6.66828 6.83860 7.02866 7.12138 7.26146 7.43487 7.53891 7.75963 7.91905 8.07612 8.15953 8.50942 9.11807 9.67925 11.17366 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029009 B = 0.003230 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.975600 B = 8667.427180 C = 9150.267932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.077 3.923 13 H 0.100 0.900 14 N -0.812 5.812 15 C 0.484 3.516 16 O -0.550 6.550 17 N -0.726 5.726 18 C 0.144 3.856 19 H 0.088 0.912 20 C -0.105 4.105 21 C -0.143 4.143 22 C -0.166 4.166 23 C -0.086 4.086 24 C -0.128 4.128 25 H 0.260 0.740 26 H 0.012 0.988 27 H 0.014 0.986 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.350 0.650 33 H 0.337 0.663 34 H 0.403 0.597 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -22.188 -6.539 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.039 4.039 13 H 0.118 0.882 14 N -0.340 5.340 15 C 0.269 3.731 16 O -0.428 6.428 17 N -0.378 5.378 18 C 0.039 3.961 19 H 0.106 0.894 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.184 4.184 23 C -0.123 4.123 24 C -0.166 4.166 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.237 0.763 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.457 -21.798 -6.012 22.616 hybrid contribution -0.121 0.141 -0.285 0.340 sum 0.336 -21.657 -6.297 22.557 Atomic orbital electron populations 1.69960 1.06052 1.26567 1.51177 1.25031 0.94830 0.99205 0.95490 0.86675 0.79579 0.83232 0.78610 1.20293 1.21387 1.20238 1.21251 0.93050 0.91133 1.50128 0.92708 1.19113 0.94099 0.91623 0.96900 1.21537 0.98764 0.92314 1.01144 1.21644 0.96524 0.94024 1.01929 1.21769 0.95857 0.90926 0.95303 0.88244 1.59037 1.17370 1.54239 1.03345 1.22566 0.78942 0.88809 0.82796 1.90665 1.57896 1.57239 1.36950 1.46232 1.57685 1.23467 1.10403 1.20972 0.91487 0.86157 0.97481 0.89428 1.20876 0.93981 0.96839 1.02659 1.22031 0.99882 0.95717 0.98560 1.22024 0.97494 0.99283 0.99572 1.20381 0.94230 0.96629 1.01069 1.21899 1.01554 0.97096 0.96089 0.93061 0.96984 0.96810 0.91849 0.93691 0.91947 0.91967 0.83595 0.85066 0.76298 0.90376 0.90247 0.87708 0.87825 0.90617 0.90748 0.90957 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.10 -2.04 5.04 -26.73 -0.13 -2.17 16 11 C -0.10 -1.70 4.84 -26.73 -0.13 -1.82 16 12 C 0.08 1.05 3.15 -68.87 -0.22 0.83 16 13 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 14 N -0.81 -11.18 8.44 -5.66 -0.05 -11.22 16 15 C 0.48 6.49 7.05 -10.98 -0.08 6.42 16 16 O -0.55 -9.10 15.91 5.56 0.09 -9.01 16 17 N -0.73 -7.65 5.09 -53.59 -0.27 -7.93 16 18 C 0.14 1.45 2.51 -67.72 -0.17 1.28 16 19 H 0.09 1.05 7.56 -51.93 -0.39 0.65 16 20 C -0.11 -1.11 5.71 -28.17 -0.16 -1.27 16 21 C -0.14 -1.31 9.80 -35.90 -0.35 -1.66 16 22 C -0.17 -1.32 9.80 -35.90 -0.35 -1.67 16 23 C -0.09 -0.59 6.12 -28.18 -0.17 -0.77 16 24 C -0.13 -0.96 5.50 -26.52 -0.15 -1.11 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.34 7.75 -51.93 -0.40 0.94 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.35 5.04 8.58 -39.29 -0.34 4.70 16 33 H 0.34 4.03 9.06 -39.29 -0.36 3.67 16 34 H 0.40 3.41 8.61 -40.82 -0.35 3.06 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.10 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -32.49 344.06 -9.09 -41.59 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.30 Total: 6.34 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.46 Total: -15.25 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.42 Total: -45.77 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.49 -9.09 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594454920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.442 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds