Wall clock time and date at job start Mon Mar 30 2020 05:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47153 * 240.00388 * 3 2 1 5 5 H 1.48494 * 109.46852 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47067 * 120.00282 * 3 2 1 7 7 C 1.37878 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47167 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47167 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47307 * 304.99895 * 12 11 10 14 14 N 1.46896 * 109.47465 * 65.00178 * 12 11 10 15 15 C 1.50706 * 109.47066 * 185.00455 * 12 11 10 16 16 O 1.21283 * 119.99503 * 259.99830 * 15 12 11 17 17 N 1.34773 * 120.00081 * 79.72557 * 15 12 11 18 18 C 1.46506 * 119.99968 * 180.02562 * 17 15 12 19 19 H 1.09004 * 109.63486 * 325.41817 * 18 17 15 20 20 C 1.53023 * 109.64081 * 86.04902 * 18 17 15 21 21 C 1.50073 * 110.14222 * 169.12184 * 20 18 17 22 22 C 1.29448 * 124.07663 * 342.87033 * 21 20 18 23 23 C 1.50064 * 124.07479 * 0.46862 * 22 21 20 24 24 C 1.53027 * 110.14901 * 342.87254 * 23 22 21 25 25 H 0.97000 * 119.99846 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47281 * 60.00185 * 9 7 2 27 27 H 1.09002 * 109.47018 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47297 * 60.00503 * 10 9 7 29 29 H 1.08995 * 109.47210 * 300.00081 * 10 9 7 30 30 H 1.09003 * 109.46940 * 60.00184 * 11 10 9 31 31 H 1.08995 * 109.47266 * 300.00224 * 11 10 9 32 32 H 1.00900 * 110.99773 * 59.99397 * 14 12 11 33 33 H 1.00897 * 111.00727 * 183.95321 * 14 12 11 34 34 H 0.96998 * 120.00525 * 359.97438 * 17 15 12 35 35 H 1.08994 * 109.36197 * 289.32977 * 20 18 17 36 36 H 1.08997 * 109.35838 * 48.91804 * 20 18 17 37 37 H 1.07999 * 117.96207 * 162.89260 * 21 20 18 38 38 H 1.07993 * 117.95992 * 180.44806 * 22 21 20 39 39 H 1.08997 * 109.36039 * 222.66216 * 23 22 21 40 40 H 1.09004 * 109.36016 * 103.07440 * 23 22 21 41 41 H 1.09002 * 109.64056 * 289.74737 * 24 23 22 42 42 H 1.09003 * 109.81969 * 169.22529 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 1 3.1581 -6.0432 -0.8428 14 7 3.2386 -6.1418 1.2541 15 6 1.7251 -7.4516 -0.1239 16 8 1.5135 -8.1252 0.8623 17 7 1.2851 -7.8644 -1.3290 18 6 0.5560 -9.1295 -1.4488 19 1 0.9522 -9.8497 -0.7329 20 6 -0.9314 -8.8935 -1.1781 21 6 -1.7245 -10.1112 -1.5528 22 6 -1.2808 -11.0599 -2.3135 23 6 0.0922 -11.0796 -2.9189 24 6 0.7089 -9.6798 -2.8723 25 1 -0.4850 0.8401 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0451 -0.8897 31 1 0.8540 -5.0446 0.8903 32 1 2.6268 -6.2395 2.0506 33 1 3.9463 -6.8610 1.2513 34 1 1.4506 -7.3235 -2.1171 35 1 -1.0765 -8.6795 -0.1192 36 1 -1.2754 -8.0431 -1.7669 37 1 -2.7279 -10.2015 -1.1638 38 1 -1.9396 -11.8890 -2.5254 39 1 0.0255 -11.4107 -3.9552 40 1 0.7234 -11.7711 -2.3607 41 1 0.1904 -9.0275 -3.5750 42 1 1.7659 -9.7328 -3.1333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594454920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:15 Heat of formation + Delta-G solvation = -78.325782 kcal Electronic energy + Delta-G solvation = -19945.225505 eV Core-core repulsion = 16922.844027 eV Total energy + Delta-G solvation = -3022.381478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29054 -39.26813 -37.09589 -35.29558 -35.22279 -33.11396 -31.77911 -30.77074 -29.42546 -26.73021 -24.64265 -23.98802 -22.71839 -21.75045 -21.19079 -19.04010 -18.43731 -17.98960 -17.84853 -17.03845 -16.48699 -16.45188 -15.99063 -15.40332 -15.25405 -14.66365 -14.48240 -14.40856 -14.23776 -14.15407 -13.63433 -13.42479 -13.25735 -13.08906 -12.82074 -12.47648 -12.40354 -12.20362 -12.05606 -11.75344 -11.56348 -11.44691 -11.35450 -11.22462 -10.93942 -10.50898 -10.15015 -9.90446 -9.67227 -8.16475 -6.27102 1.35434 1.41680 1.45132 1.50186 1.52999 2.16217 2.44056 3.16490 3.51320 3.66587 3.75962 3.84295 3.98712 4.03114 4.17516 4.24202 4.37079 4.43314 4.53447 4.59880 4.64229 4.68791 4.86640 4.92989 4.94578 5.02610 5.14653 5.19944 5.25571 5.27898 5.35219 5.46503 5.61328 5.71014 5.85179 5.94425 6.00071 6.04941 6.31109 6.44286 6.53369 6.90723 7.16476 7.41979 8.95165 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029009 B = 0.003230 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.975600 B = 8667.427180 C = 9150.267932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.084 4.084 11 C -0.094 4.094 12 C 0.087 3.913 13 H 0.125 0.875 14 N -0.819 5.819 15 C 0.486 3.514 16 O -0.584 6.584 17 N -0.712 5.712 18 C 0.144 3.856 19 H 0.068 0.932 20 C -0.102 4.102 21 C -0.167 4.167 22 C -0.154 4.154 23 C -0.088 4.088 24 C -0.121 4.121 25 H 0.262 0.738 26 H -0.008 1.008 27 H -0.018 1.018 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.345 0.655 33 H 0.349 0.651 34 H 0.415 0.585 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -22.837 -8.242 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.121 4.121 11 C -0.132 4.132 12 C -0.029 4.029 13 H 0.142 0.858 14 N -0.348 5.348 15 C 0.271 3.729 16 O -0.464 6.464 17 N -0.364 5.364 18 C 0.039 3.961 19 H 0.086 0.914 20 C -0.140 4.140 21 C -0.186 4.186 22 C -0.172 4.172 23 C -0.126 4.126 24 C -0.159 4.159 25 H 0.071 0.929 26 H 0.011 0.989 27 H 0.001 0.999 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.252 0.748 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.878 -22.462 -7.754 23.837 hybrid contribution -0.601 0.300 0.233 0.711 sum 1.277 -22.162 -7.521 23.438 Atomic orbital electron populations 1.70099 1.07831 1.27706 1.52005 1.25997 0.95755 1.03385 0.94878 0.85522 0.78280 0.78145 0.79238 1.18884 1.20965 1.19369 1.21721 0.93606 0.92488 1.50085 0.92139 1.19047 0.94567 0.93502 0.94391 1.21281 0.97519 0.92050 1.01270 1.21453 0.96725 0.93396 1.01638 1.21631 0.95448 0.89626 0.96164 0.85775 1.59041 1.17597 1.54887 1.03226 1.22458 0.78794 0.88555 0.83102 1.90657 1.59248 1.58259 1.38270 1.46150 1.56497 1.23690 1.10017 1.21018 0.90773 0.85372 0.98961 0.91373 1.20789 0.94723 0.97728 1.00806 1.22014 1.00236 0.96013 1.00314 1.22302 0.98154 0.98779 0.97976 1.20480 0.93445 0.96320 1.02324 1.21884 1.02648 0.97433 0.93946 0.92887 0.98932 0.99915 0.92600 0.92456 0.90886 0.93800 0.84203 0.83756 0.74771 0.93286 0.90437 0.87475 0.86240 0.88478 0.90237 0.90235 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.54 -31.28 9.11 25.60 0.23 -31.04 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.08 -3.39 5.04 30.59 0.15 -3.23 16 11 C -0.09 -3.06 4.84 30.59 0.15 -2.91 16 12 C 0.09 2.25 3.15 44.17 0.14 2.38 16 13 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 14 N -0.82 -21.88 8.44 -171.81 -1.45 -23.33 16 15 C 0.49 12.71 7.05 87.66 0.62 13.33 16 16 O -0.58 -19.49 15.91 -3.04 -0.05 -19.54 16 17 N -0.71 -14.13 5.09 -441.86 -2.25 -16.38 16 18 C 0.14 2.77 2.51 45.13 0.11 2.88 16 19 H 0.07 1.62 7.56 -2.38 -0.02 1.60 16 20 C -0.10 -2.17 5.71 29.66 0.17 -2.00 16 21 C -0.17 -2.97 9.80 27.03 0.27 -2.71 16 22 C -0.15 -2.17 9.80 27.03 0.27 -1.90 16 23 C -0.09 -0.99 6.12 29.66 0.18 -0.81 16 24 C -0.12 -1.52 5.50 30.73 0.17 -1.36 16 25 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 27 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 28 H 0.06 2.34 7.75 -2.39 -0.02 2.33 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.34 9.96 8.58 -89.69 -0.77 9.19 16 33 H 0.35 7.91 9.06 -89.70 -0.81 7.10 16 34 H 0.42 6.13 8.61 -92.71 -0.80 5.33 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -70.95 344.06 0.26 -70.69 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -1.37 Total: 25.13 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 3.07 Total: -25.75 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -3.41 Total: -97.34 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.95 0.26 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594454920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.636 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds