Wall clock time and date at job start Mon Mar 30 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99909 * 2 1 4 4 C 1.50695 * 109.46916 * 269.99743 * 3 2 1 5 5 H 1.07995 * 120.00491 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99770 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00175 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99890 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47045 * 60.00093 * 8 6 4 10 10 H 1.48501 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46861 * 299.99466 * 8 6 4 12 12 C 1.34776 * 119.99926 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00058 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00233 * 0.02562 * 12 2 1 15 15 C 1.52996 * 109.47131 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.46848 * 177.88305 * 15 14 12 17 17 C 1.49605 * 111.00038 * 65.29632 * 16 15 14 18 18 C 1.56742 * 99.23382 * 117.88821 * 17 16 15 19 19 C 1.55152 * 101.83325 * 43.30972 * 18 17 16 20 20 C 1.50240 * 110.99867 * 176.76315 * 16 15 14 21 21 C 1.53001 * 117.57651 * 63.42146 * 20 16 15 22 22 C 1.55699 * 108.30558 * 284.62399 * 20 16 15 23 23 H 1.09001 * 109.47354 * 270.00002 * 1 2 3 24 24 H 1.08996 * 109.47300 * 30.00136 * 1 2 3 25 25 H 1.09000 * 109.47227 * 150.00021 * 1 2 3 26 26 H 1.09001 * 109.47076 * 29.99897 * 3 2 1 27 27 H 1.09000 * 109.47035 * 149.99869 * 3 2 1 28 28 H 0.97000 * 120.00122 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46998 * 59.99324 * 14 12 2 30 30 H 1.09002 * 109.47043 * 300.00325 * 14 12 2 31 31 H 1.08999 * 109.47531 * 57.88607 * 15 14 12 32 32 H 1.08998 * 109.47100 * 297.87995 * 15 14 12 33 33 H 1.09005 * 111.43823 * 235.39341 * 17 16 15 34 34 H 1.08992 * 111.44722 * 0.37916 * 17 16 15 35 35 H 1.09006 * 118.44024 * 178.68257 * 18 17 16 36 36 H 1.08993 * 114.44017 * 183.28826 * 19 18 17 37 37 H 1.09003 * 114.47512 * 49.88128 * 19 18 17 38 38 H 1.08998 * 109.46894 * 64.51765 * 21 20 16 39 39 H 1.08997 * 109.46930 * 184.51710 * 21 20 16 40 40 H 1.09004 * 109.47183 * 304.51970 * 21 20 16 41 41 H 1.09003 * 114.53023 * 53.21365 * 22 20 16 42 42 H 1.09005 * 114.52366 * 186.88990 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5550 3.6170 -0.6732 8 14 3.4377 3.4170 -3.4339 9 1 2.1399 3.5953 -4.1333 10 1 4.1802 4.7030 -3.4339 11 1 4.2395 2.3818 -4.1345 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6458 -4.9068 0.0517 17 6 0.8370 -5.1094 -1.1904 18 6 1.5235 -6.4119 -1.7280 19 6 1.6678 -7.2534 -0.4326 20 6 2.5872 -6.0751 -0.0259 21 6 3.5949 -6.2496 1.1120 22 6 3.0730 -6.2147 -1.4986 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0319 4.4429 -0.8504 29 1 0.7590 -2.5302 -0.8897 30 1 0.7583 -2.5298 0.8903 31 1 3.0310 -3.5564 0.8709 32 1 2.9810 -3.5991 -0.9078 33 1 -0.2143 -5.2798 -0.9580 34 1 0.9590 -4.2786 -1.8854 35 1 1.1435 -6.8575 -2.6473 36 1 2.1849 -8.2033 -0.5671 37 1 0.7541 -7.3364 0.1561 38 1 3.0622 -6.4529 2.0410 39 1 4.2592 -7.0832 0.8843 40 1 4.1810 -5.3371 1.2215 41 1 3.4950 -5.3042 -1.9241 42 1 3.6707 -7.1047 -1.6954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595918480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:36 Heat of formation + Delta-G solvation = 24.952998 kcal Electronic energy + Delta-G solvation = -20685.268927 eV Core-core repulsion = 17667.365952 eV Total energy + Delta-G solvation = -3017.902974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.38919 -38.90374 -34.87846 -34.04945 -32.57624 -30.75684 -29.69430 -27.61616 -26.11623 -25.58553 -25.29101 -23.50302 -21.87372 -20.13108 -18.98879 -18.20152 -16.54559 -16.33716 -15.81789 -15.48411 -15.24409 -15.05159 -14.38915 -14.13588 -13.69772 -13.42412 -13.12789 -12.77319 -12.40431 -12.21382 -12.07955 -11.99667 -11.94828 -11.73589 -11.59994 -11.31171 -11.14248 -10.93679 -10.86384 -10.57058 -10.53085 -10.49635 -10.22309 -10.14732 -9.63033 -8.86283 -8.53262 -8.42319 -7.61216 -6.03099 -4.07987 3.31995 3.36331 3.38260 3.48589 3.60278 4.09812 4.14668 4.23865 4.33529 4.46180 4.64286 5.00349 5.10528 5.18350 5.28789 5.30048 5.36622 5.46233 5.55035 5.56236 5.64913 5.67783 5.68991 5.70197 5.75946 5.84617 5.89802 5.93592 5.98414 6.13490 6.14752 6.21560 6.24295 6.64345 6.99146 7.08575 7.46456 7.56763 7.93304 8.25118 8.45301 8.91417 9.12817 9.57005 11.04954 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.004047 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.536818 B = 6916.611905 C = 7098.949400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.505 3.495 13 O -0.545 6.545 14 C -0.135 4.135 15 C 0.056 3.944 16 N -0.484 5.484 17 C 0.032 3.968 18 C -0.146 4.146 19 C -0.132 4.132 20 C 0.055 3.945 21 C -0.116 4.116 22 C -0.163 4.163 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -19.843 0.834 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.423 6.423 14 C -0.175 4.175 15 C -0.072 4.072 16 N -0.207 5.207 17 C -0.096 4.096 18 C -0.164 4.164 19 C -0.170 4.170 20 C -0.035 4.035 21 C -0.173 4.173 22 C -0.202 4.202 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.382 -19.581 1.435 20.645 hybrid contribution 0.524 0.528 -1.852 1.995 sum -5.858 -19.053 -0.417 19.938 Atomic orbital electron populations 1.21628 0.81458 1.02481 1.00426 1.48156 1.06175 1.07871 1.71353 1.19274 0.92566 0.78171 0.97423 1.21398 1.36553 1.06290 0.92308 0.92606 1.24937 0.95357 0.96388 0.97413 1.69923 1.38332 1.14377 1.30777 0.86562 0.78350 0.77826 0.84703 1.20252 1.21131 1.20216 1.20281 0.88064 0.85144 0.77423 1.90661 1.13990 1.87358 1.50322 1.21626 0.99216 0.92799 1.03872 1.22011 0.95268 0.87359 1.02568 1.66809 1.17624 1.01261 1.34989 1.23815 0.98529 0.96095 0.91164 1.24941 0.95695 0.97449 0.98358 1.23804 1.00039 0.96386 0.96766 1.23981 0.93492 0.92064 0.93918 1.21218 0.97197 1.02069 0.96834 1.24777 0.95439 1.02246 0.97765 0.93724 0.90867 0.92476 0.95048 0.93866 0.92661 0.89795 0.88899 0.89688 0.93571 0.89180 0.91319 0.87666 0.89657 0.90903 0.91592 0.91857 0.91768 0.91252 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.98 16 2 N -0.60 -13.11 2.86 -182.96 -0.52 -13.63 16 3 C 0.24 6.55 5.16 -5.20 -0.03 6.53 16 4 C -0.53 -15.20 9.39 -34.44 -0.32 -15.53 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.50 10.71 7.67 -10.99 -0.08 10.63 16 13 O -0.55 -13.96 15.55 5.56 0.09 -13.87 16 14 C -0.13 -2.07 4.19 -27.89 -0.12 -2.19 16 15 C 0.06 0.85 3.76 -3.82 -0.01 0.83 16 16 N -0.48 -6.07 5.63 -215.68 -1.21 -7.28 16 17 C 0.03 0.35 6.32 -0.29 0.00 0.34 16 18 C -0.15 -1.41 6.45 -90.77 -0.59 -1.99 16 19 C -0.13 -1.23 7.33 -28.76 -0.21 -1.44 16 20 C 0.06 0.61 1.69 -133.27 -0.22 0.39 16 21 C -0.12 -1.17 9.93 37.16 0.37 -0.80 16 22 C -0.16 -1.72 7.50 -26.78 -0.20 -1.92 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 25 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 26 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.08 1.16 6.09 -51.93 -0.32 0.85 16 30 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 31 H 0.08 1.38 7.15 -51.93 -0.37 1.01 16 32 H 0.05 0.77 6.85 -51.93 -0.36 0.41 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.79 6.74 -51.93 -0.35 0.44 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 37 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.73 7.25 -51.93 -0.38 0.35 16 41 H 0.07 0.86 7.04 -51.93 -0.37 0.49 16 42 H 0.09 0.83 7.89 -51.93 -0.41 0.42 16 LS Contribution 333.21 15.07 5.02 5.02 Total: -1.00 -32.99 333.21 -8.83 -41.82 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.01 Total: -1.41 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.90 Total: -1.51 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -1.00 Total: -47.12 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.99 -8.83 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595918480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.770 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds