Wall clock time and date at job start Mon Mar 30 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99909 * 2 1 4 4 C 1.50695 * 109.46916 * 269.99743 * 3 2 1 5 5 H 1.07995 * 120.00491 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99770 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00175 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99890 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47045 * 60.00093 * 8 6 4 10 10 H 1.48501 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46861 * 299.99466 * 8 6 4 12 12 C 1.34776 * 119.99926 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00058 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00233 * 0.02562 * 12 2 1 15 15 C 1.52996 * 109.47131 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.46848 * 177.88305 * 15 14 12 17 17 C 1.49605 * 111.00038 * 65.29632 * 16 15 14 18 18 C 1.56742 * 99.23382 * 117.88821 * 17 16 15 19 19 C 1.55152 * 101.83325 * 43.30972 * 18 17 16 20 20 C 1.50240 * 110.99867 * 176.76315 * 16 15 14 21 21 C 1.53001 * 117.57651 * 63.42146 * 20 16 15 22 22 C 1.55699 * 108.30558 * 284.62399 * 20 16 15 23 23 H 1.09001 * 109.47354 * 270.00002 * 1 2 3 24 24 H 1.08996 * 109.47300 * 30.00136 * 1 2 3 25 25 H 1.09000 * 109.47227 * 150.00021 * 1 2 3 26 26 H 1.09001 * 109.47076 * 29.99897 * 3 2 1 27 27 H 1.09000 * 109.47035 * 149.99869 * 3 2 1 28 28 H 0.97000 * 120.00122 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46998 * 59.99324 * 14 12 2 30 30 H 1.09002 * 109.47043 * 300.00325 * 14 12 2 31 31 H 1.08999 * 109.47531 * 57.88607 * 15 14 12 32 32 H 1.08998 * 109.47100 * 297.87995 * 15 14 12 33 33 H 1.09005 * 111.43823 * 235.39341 * 17 16 15 34 34 H 1.08992 * 111.44722 * 0.37916 * 17 16 15 35 35 H 1.09006 * 118.44024 * 178.68257 * 18 17 16 36 36 H 1.08993 * 114.44017 * 183.28826 * 19 18 17 37 37 H 1.09003 * 114.47512 * 49.88128 * 19 18 17 38 38 H 1.08998 * 109.46894 * 64.51765 * 21 20 16 39 39 H 1.08997 * 109.46930 * 184.51710 * 21 20 16 40 40 H 1.09004 * 109.47183 * 304.51970 * 21 20 16 41 41 H 1.09003 * 114.53023 * 53.21365 * 22 20 16 42 42 H 1.09005 * 114.52366 * 186.88990 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5550 3.6170 -0.6732 8 14 3.4377 3.4170 -3.4339 9 1 2.1399 3.5953 -4.1333 10 1 4.1802 4.7030 -3.4339 11 1 4.2395 2.3818 -4.1345 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6458 -4.9068 0.0517 17 6 0.8370 -5.1094 -1.1904 18 6 1.5235 -6.4119 -1.7280 19 6 1.6678 -7.2534 -0.4326 20 6 2.5872 -6.0751 -0.0259 21 6 3.5949 -6.2496 1.1120 22 6 3.0730 -6.2147 -1.4986 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0319 4.4429 -0.8504 29 1 0.7590 -2.5302 -0.8897 30 1 0.7583 -2.5298 0.8903 31 1 3.0310 -3.5564 0.8709 32 1 2.9810 -3.5991 -0.9078 33 1 -0.2143 -5.2798 -0.9580 34 1 0.9590 -4.2786 -1.8854 35 1 1.1435 -6.8575 -2.6473 36 1 2.1849 -8.2033 -0.5671 37 1 0.7541 -7.3364 0.1561 38 1 3.0622 -6.4529 2.0410 39 1 4.2592 -7.0832 0.8843 40 1 4.1810 -5.3371 1.2215 41 1 3.4950 -5.3042 -1.9241 42 1 3.6707 -7.1047 -1.6954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595918480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:36 Heat of formation + Delta-G solvation = 2.360885 kcal Electronic energy + Delta-G solvation = -20686.248594 eV Core-core repulsion = 17667.365952 eV Total energy + Delta-G solvation = -3018.882642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.24838 -40.60360 -36.67061 -35.28140 -34.68105 -31.58415 -31.07502 -29.39339 -27.36471 -26.88681 -26.06310 -25.22223 -23.34050 -21.03878 -19.98918 -19.72932 -18.72010 -17.81742 -17.14120 -16.91425 -16.44871 -16.38539 -15.99535 -15.53521 -14.80653 -14.48055 -14.30329 -14.18057 -13.92540 -13.67691 -13.47768 -13.32637 -13.15105 -12.99302 -12.80726 -12.74591 -12.59212 -12.53079 -12.21064 -12.12815 -11.97627 -11.73731 -11.47358 -11.32461 -11.03177 -10.66352 -10.63230 -9.51931 -9.43497 -8.24281 -6.39764 1.34681 1.39183 1.46634 1.80869 2.25317 2.40027 2.88512 3.04984 3.34994 3.42961 3.52064 3.75068 3.85219 3.96596 4.10255 4.22633 4.34730 4.42948 4.59604 4.67248 4.70644 4.72782 4.76656 4.85926 4.88428 4.90751 4.93091 4.95537 4.98330 5.01195 5.03783 5.17645 5.20358 5.22800 5.36221 5.53738 5.70695 5.82213 5.96843 6.03952 6.66934 6.76542 7.25743 7.45681 8.82766 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.004047 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.536818 B = 6916.611905 C = 7098.949400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.114 4.114 15 C 0.068 3.932 16 N -0.486 5.486 17 C 0.025 3.975 18 C -0.139 4.139 19 C -0.117 4.117 20 C 0.037 3.963 21 C -0.115 4.115 22 C -0.168 4.168 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.024 0.976 27 H -0.004 1.004 28 H 0.268 0.732 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 -21.812 -0.422 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.283 3.717 13 O -0.483 6.483 14 C -0.154 4.154 15 C -0.061 4.061 16 N -0.209 5.209 17 C -0.102 4.102 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.053 4.053 21 C -0.172 4.172 22 C -0.207 4.207 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.112 0.888 26 H 0.042 0.958 27 H 0.014 0.986 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.509 -21.570 0.184 23.188 hybrid contribution 1.178 1.119 -1.404 2.147 sum -7.331 -20.451 -1.220 21.760 Atomic orbital electron populations 1.21939 0.77735 1.04006 1.02659 1.48201 1.08509 1.06361 1.71116 1.18754 0.91059 0.80458 0.96060 1.21674 1.37068 1.06673 0.92986 0.92907 1.25887 0.94803 0.96365 1.02129 1.70046 1.38784 1.14821 1.33175 0.85455 0.78914 0.77373 0.78994 1.18295 1.20171 1.20418 1.21333 0.87780 0.86710 0.75853 1.90629 1.16765 1.88268 1.52682 1.21528 0.98781 0.89006 1.06104 1.21764 0.94934 0.88990 1.00429 1.66829 1.17736 1.00314 1.36070 1.23959 0.99309 0.96617 0.90317 1.24975 0.94404 0.96938 0.99440 1.23762 0.99551 0.96214 0.95870 1.24213 0.94250 0.92450 0.94379 1.21228 0.97251 1.01738 0.97009 1.24873 0.96651 1.01840 0.97314 0.91071 0.91521 0.88784 0.95800 0.98603 0.92328 0.87331 0.86290 0.91789 0.96051 0.87307 0.92199 0.85648 0.87632 0.90739 0.91223 0.89939 0.93976 0.93999 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.39 10.24 127.77 1.31 3.70 16 2 N -0.61 -26.78 2.86 -851.15 -2.43 -29.22 16 3 C 0.26 14.40 5.16 85.63 0.44 14.84 16 4 C -0.55 -32.23 9.39 25.60 0.24 -31.99 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.42 5.46 84.66 0.46 0.88 16 7 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 8 Si 0.97 45.52 29.54 68.60 2.03 47.54 16 9 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 C 0.49 21.38 7.67 87.66 0.67 22.05 16 13 O -0.60 -32.53 15.55 -3.03 -0.05 -32.57 16 14 C -0.11 -3.38 4.19 29.85 0.13 -3.25 16 15 C 0.07 2.06 3.76 86.30 0.32 2.39 16 16 N -0.49 -11.52 5.63 -836.27 -4.70 -16.22 16 17 C 0.03 0.49 6.32 87.08 0.55 1.04 16 18 C -0.14 -2.29 6.45 -10.89 -0.07 -2.36 16 19 C -0.12 -1.78 7.33 29.28 0.21 -1.57 16 20 C 0.04 0.76 1.69 0.57 0.00 0.76 16 21 C -0.11 -2.26 9.93 71.98 0.71 -1.54 16 22 C -0.17 -3.32 7.50 30.56 0.23 -3.09 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 25 H 0.09 2.16 6.44 -2.39 -0.02 2.14 16 26 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 27 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 29 H 0.11 2.72 6.09 -2.38 -0.01 2.70 16 30 H 0.12 2.96 8.11 -2.39 -0.02 2.94 16 31 H 0.06 2.19 7.15 -2.39 -0.02 2.17 16 32 H 0.02 0.74 6.85 -2.39 -0.02 0.72 16 33 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.06 1.27 6.74 -2.39 -0.02 1.25 16 35 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.11 1.23 7.89 -2.39 -0.02 1.21 16 37 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.04 0.99 7.25 -2.38 -0.02 0.98 16 41 H 0.04 1.05 7.04 -2.39 -0.02 1.04 16 42 H 0.11 1.76 7.89 -2.38 -0.02 1.74 16 Total: -1.00 -75.23 333.21 1.33 -73.91 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.98 Total: 11.64 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.21 Total: 1.85 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -6.85 Total: -102.37 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.05 Total: -32.57 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.23 1.33 -73.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595918480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.268 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds