Wall clock time and date at job start Mon Mar 30 2020 05:57:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52997 * 109.99247 * 2 1
4 4 O 1.43746 * 109.87880 * 238.91201 * 2 1 3
5 5 C 1.44382 * 106.97521 * 214.06664 * 4 2 1
6 6 C 1.54995 * 103.49044 * 40.06062 * 5 4 2
7 7 C 1.54103 * 109.87633 * 121.08293 * 2 1 3
8 8 H 1.08999 * 110.60153 * 240.18242 * 7 2 1
9 9 C 1.53005 * 110.48961 * 2.77730 * 7 2 1
10 10 N 1.46900 * 109.47097 * 181.21894 * 9 7 2
11 11 C 1.46900 * 110.99761 * 179.97438 * 10 9 7
12 12 C 1.52994 * 109.47023 * 180.02562 * 11 10 9
13 13 H 1.09003 * 109.47481 * 55.00359 * 12 11 10
14 14 C 1.47197 * 109.47219 * 294.99996 * 12 11 10
15 15 N 7.02145 * 96.49132 * 139.61697 * 2 1 3
16 16 C 1.52998 * 109.47095 * 175.00276 * 12 11 10
17 17 C 1.50706 * 109.47348 * 184.99906 * 16 12 11
18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 12
19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 12
20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16
22 22 H 1.48501 * 109.47483 * 269.99808 * 21 19 17
23 23 H 1.48499 * 109.47134 * 30.00322 * 21 19 17
24 24 H 1.48507 * 109.46904 * 150.00145 * 21 19 17
25 25 H 1.08995 * 109.47028 * 298.92140 * 1 2 3
26 26 H 1.09002 * 109.46726 * 58.91566 * 1 2 3
27 27 H 1.08997 * 109.47368 * 178.91766 * 1 2 3
28 28 H 1.09001 * 109.47143 * 181.07932 * 3 2 1
29 29 H 1.09000 * 109.47073 * 301.08316 * 3 2 1
30 30 H 1.08999 * 109.46986 * 61.08313 * 3 2 1
31 31 H 1.09003 * 110.61243 * 281.55988 * 5 4 2
32 32 H 1.09000 * 110.75409 * 158.62725 * 5 4 2
33 33 H 1.09004 * 110.90600 * 204.77962 * 6 5 4
34 34 H 1.08992 * 110.93602 * 81.19166 * 6 5 4
35 35 H 1.09000 * 109.46686 * 61.21736 * 9 7 2
36 36 H 1.09007 * 109.46919 * 301.22234 * 9 7 2
37 37 H 1.00894 * 110.99679 * 56.04910 * 10 9 7
38 38 H 1.09004 * 109.47027 * 60.00361 * 11 10 9
39 39 H 1.09002 * 109.47026 * 300.00576 * 11 10 9
40 40 H 1.09001 * 109.47671 * 65.00115 * 16 12 11
41 41 H 1.09006 * 109.47297 * 304.99834 * 16 12 11
42 42 H 0.97001 * 119.99646 * 359.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0531 1.4378 0.0000
4 8 2.0188 -0.6980 -1.1577
5 6 3.2379 -1.3643 -0.7646
6 6 2.9194 -1.8915 0.6577
7 6 2.0540 -0.7482 1.2411
8 1 2.6615 -0.0873 1.8593
9 6 0.8898 -1.3190 2.0535
10 7 1.4121 -2.0014 3.2449
11 6 0.3200 -2.5628 4.0512
12 6 0.9019 -3.2633 5.2806
13 1 1.5342 -2.5663 5.8307
14 6 1.7042 -4.4205 4.8522
15 7 2.3238 -5.3142 4.5200
16 6 -0.2379 -3.7392 6.1835
17 6 0.3342 -4.3191 7.4514
18 1 1.4038 -4.3459 7.5983
19 6 -0.5079 -4.8154 8.4238
20 7 -1.8104 -4.7833 8.2447
21 14 0.2014 -5.5348 9.9950
22 1 0.4397 -6.9889 9.8103
23 1 1.4849 -4.8593 10.3134
24 1 -0.7568 -5.3281 11.1106
25 1 -0.3633 0.4970 0.8995
26 1 -0.3633 0.5306 -0.8801
27 1 -0.3634 -1.0274 -0.0194
28 1 3.1429 1.4279 -0.0194
29 1 1.6787 1.9606 -0.8801
30 1 1.7104 1.9491 0.8995
31 1 4.0685 -0.6590 -0.7355
32 1 3.4612 -2.1908 -1.4393
33 1 3.8331 -2.0225 1.2376
34 1 2.3541 -2.8222 0.6105
35 1 0.3341 -2.0299 1.4419
36 1 0.2284 -0.5083 2.3596
37 1 1.9850 -1.3797 3.7956
38 1 -0.2400 -3.2823 3.4537
39 1 -0.3449 -1.7605 4.3711
40 1 -0.8182 -4.5022 5.6646
41 1 -0.8836 -2.8959 6.4287
42 1 -2.1786 -4.4100 7.4286
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000596048283.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:57:42
Heat of formation + Delta-G solvation = -44.347768 kcal
Electronic energy + Delta-G solvation = -20216.516107 eV
Core-core repulsion = 17195.608025 eV
Total energy + Delta-G solvation = -3020.908081 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.36426 -37.44864 -35.53196 -34.03121 -33.31336 -32.27784 -30.91564 -28.25776
-26.98957 -25.61378 -23.71359 -22.55265 -22.07072 -21.52399 -19.60646 -17.34103
-16.74995 -16.55871 -16.05322 -15.28179 -15.10761 -14.59516 -14.50751 -13.82018
-13.72070 -13.49557 -13.34036 -13.13958 -12.50184 -12.39257 -12.27582 -12.19282
-12.04776 -11.87525 -11.77956 -11.41383 -11.34729 -11.17328 -10.90026 -10.81797
-10.75381 -10.61091 -10.36945 -10.16790 -9.93387 -9.80603 -8.68621 -8.43535
-8.37318 -6.45176 -4.16440 3.42477 3.44371 3.59984 3.62242 3.65086
3.73856 3.99463 4.42314 4.48413 4.50664 4.69587 4.80886 4.83517
4.92977 5.03638 5.19582 5.27145 5.30563 5.33503 5.34884 5.42557
5.51772 5.54401 5.60539 5.61890 5.70414 5.74934 5.88726 5.89767
5.95649 6.03602 6.12189 6.24632 6.31605 6.78865 6.98255 7.06861
7.21760 7.38853 8.01337 8.33625 8.51213 8.77494 9.54843 10.95684
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.037187 B = 0.003414 C = 0.003258
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 752.778376 B = 8199.154438 C = 8591.229952
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.102 3.898
3 C -0.162 4.162
4 O -0.370 6.370
5 C 0.042 3.958
6 C -0.136 4.136
7 C -0.111 4.111
8 H 0.082 0.918
9 C 0.067 3.933
10 N -0.693 5.693
11 C 0.066 3.934
12 C 0.017 3.983
13 H 0.100 0.900
14 C 0.254 3.746
15 N -0.475 5.475
16 C 0.018 3.982
17 C -0.606 4.606
18 H 0.051 0.949
19 C 0.020 3.980
20 N -0.909 5.909
21 Si 1.069 2.931
22 H -0.288 1.288
23 H -0.287 1.287
24 H -0.283 1.283
25 H 0.071 0.929
26 H 0.059 0.941
27 H 0.067 0.933
28 H 0.057 0.943
29 H 0.061 0.939
30 H 0.065 0.935
31 H 0.056 0.944
32 H 0.090 0.910
33 H 0.079 0.921
34 H 0.081 0.919
35 H 0.077 0.923
36 H 0.036 0.964
37 H 0.340 0.660
38 H 0.076 0.924
39 H 0.048 0.952
40 H 0.017 0.983
41 H 0.028 0.972
42 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.827 13.574 -15.482 21.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.062 3.938
3 C -0.219 4.219
4 O -0.289 6.289
5 C -0.034 4.034
6 C -0.174 4.174
7 C -0.130 4.130
8 H 0.101 0.899
9 C -0.062 4.062
10 N -0.324 5.324
11 C -0.064 4.064
12 C -0.005 4.005
13 H 0.118 0.882
14 C -0.063 4.063
15 N -0.152 5.152
16 C -0.021 4.021
17 C -0.644 4.644
18 H 0.069 0.931
19 C -0.184 4.184
20 N -0.545 5.545
21 Si 0.897 3.103
22 H -0.214 1.214
23 H -0.214 1.214
24 H -0.209 1.209
25 H 0.090 0.910
26 H 0.078 0.922
27 H 0.086 0.914
28 H 0.076 0.924
29 H 0.081 0.919
30 H 0.084 0.916
31 H 0.074 0.926
32 H 0.108 0.892
33 H 0.098 0.902
34 H 0.100 0.900
35 H 0.095 0.905
36 H 0.054 0.946
37 H 0.158 0.842
38 H 0.094 0.906
39 H 0.066 0.934
40 H 0.035 0.965
41 H 0.046 0.954
42 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 6.369 10.936 -15.081 19.687
hybrid contribution 0.004 1.837 -0.688 1.962
sum 6.372 12.773 -15.769 21.270
Atomic orbital electron populations
1.22016 0.93133 1.03060 1.02302 1.22082 0.94857 0.91736 0.85115
1.22241 1.01420 0.95813 1.02436 1.88895 1.39619 1.67241 1.33180
1.23574 0.87563 0.96127 0.96147 1.23053 1.00484 0.98802 0.95036
1.22571 0.97213 0.97041 0.96148 0.89916 1.22140 0.95222 0.96781
0.92025 1.60484 1.22552 1.39971 1.09351 1.22065 0.92467 0.98348
0.93476 1.19029 0.96726 0.89542 0.95169 0.88242 1.28810 0.92495
0.93793 0.91169 1.81028 1.11268 1.11726 1.11183 1.19287 0.92011
0.96747 0.94055 1.21995 0.94849 1.44500 1.03088 0.93051 1.25795
0.94764 0.95233 1.02621 1.70779 1.11801 1.42897 1.29006 0.83539
0.74988 0.76431 0.75358 1.21430 1.21352 1.20880 0.90985 0.92185
0.91423 0.92390 0.91943 0.91570 0.92581 0.89180 0.90214 0.89990
0.90492 0.94573 0.84226 0.90587 0.93387 0.96491 0.95419 0.92027
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.30 7.71 37.16 0.29 -1.01 16
2 C 0.10 0.97 1.19 -90.04 -0.11 0.86 16
3 C -0.16 -1.30 8.62 37.16 0.32 -0.98 16
4 O -0.37 -4.22 10.86 -35.23 -0.38 -4.61 16
5 C 0.04 0.40 7.66 38.21 0.29 0.70 16
6 C -0.14 -1.39 6.52 -24.72 -0.16 -1.55 16
7 C -0.11 -1.05 2.86 -89.09 -0.25 -1.30 16
8 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16
9 C 0.07 0.69 3.80 -3.82 -0.01 0.68 16
10 N -0.69 -8.46 6.01 -113.78 -0.68 -9.14 16
11 C 0.07 0.94 5.05 -3.83 -0.02 0.92 16
12 C 0.02 0.31 2.35 -93.41 -0.22 0.09 16
13 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16
14 C 0.25 5.30 13.67 -20.73 -0.28 5.02 16
15 N -0.48 -10.80 18.54 42.19 0.78 -10.02 16
16 C 0.02 0.40 3.74 -27.88 -0.10 0.30 16
17 C -0.61 -16.25 8.60 -34.44 -0.30 -16.55 16
18 H 0.05 1.39 7.59 -52.48 -0.40 0.99 16
19 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16
20 N -0.91 -26.67 13.65 55.43 0.76 -25.91 16
21 Si 1.07 24.97 29.90 -169.99 -5.08 19.88 16
22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16
24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
25 H 0.07 0.55 6.80 -51.93 -0.35 0.20 16
26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.07 0.64 6.75 -51.93 -0.35 0.29 16
28 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16
32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
34 H 0.08 0.98 7.83 -51.93 -0.41 0.57 16
35 H 0.08 0.87 6.85 -51.93 -0.36 0.51 16
36 H 0.04 0.34 6.65 -51.93 -0.35 0.00 16
37 H 0.34 3.73 8.73 -39.29 -0.34 3.39 16
38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16
41 H 0.03 0.63 8.01 -51.93 -0.42 0.21 16
42 H 0.27 7.73 7.22 -40.82 -0.29 7.44 16
LS Contribution 341.01 15.07 5.14 5.14
Total: -1.00 -31.03 341.01 -7.23 -38.25
By element:
Atomic # 1 Polarization: 5.85 SS G_CDS: -7.10 Total: -1.25 kcal
Atomic # 6 Polarization: -11.69 SS G_CDS: -0.66 Total: -12.35 kcal
Atomic # 7 Polarization: -45.93 SS G_CDS: 0.86 Total: -45.07 kcal
Atomic # 8 Polarization: -4.22 SS G_CDS: -0.38 Total: -4.61 kcal
Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.88 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -31.03 -7.23 -38.25 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596048283.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.093 kcal
(2) G-P(sol) polarization free energy of solvation -31.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.119 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.348 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds