Wall clock time and date at job start Mon Mar 30 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.99247 * 2 1 4 4 O 1.43746 * 109.87880 * 238.91201 * 2 1 3 5 5 C 1.44382 * 106.97521 * 214.06664 * 4 2 1 6 6 C 1.54995 * 103.49044 * 40.06062 * 5 4 2 7 7 C 1.54103 * 109.87633 * 121.08293 * 2 1 3 8 8 H 1.08999 * 110.60153 * 240.18242 * 7 2 1 9 9 C 1.53005 * 110.48961 * 2.77730 * 7 2 1 10 10 N 1.46900 * 109.47097 * 181.21894 * 9 7 2 11 11 C 1.46900 * 110.99761 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47023 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47481 * 55.00359 * 12 11 10 14 14 C 1.47197 * 109.47219 * 294.99996 * 12 11 10 15 15 N 7.02145 * 96.49132 * 139.61697 * 2 1 3 16 16 C 1.52998 * 109.47095 * 175.00276 * 12 11 10 17 17 C 1.50706 * 109.47348 * 184.99906 * 16 12 11 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 12 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 12 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47483 * 269.99808 * 21 19 17 23 23 H 1.48499 * 109.47134 * 30.00322 * 21 19 17 24 24 H 1.48507 * 109.46904 * 150.00145 * 21 19 17 25 25 H 1.08995 * 109.47028 * 298.92140 * 1 2 3 26 26 H 1.09002 * 109.46726 * 58.91566 * 1 2 3 27 27 H 1.08997 * 109.47368 * 178.91766 * 1 2 3 28 28 H 1.09001 * 109.47143 * 181.07932 * 3 2 1 29 29 H 1.09000 * 109.47073 * 301.08316 * 3 2 1 30 30 H 1.08999 * 109.46986 * 61.08313 * 3 2 1 31 31 H 1.09003 * 110.61243 * 281.55988 * 5 4 2 32 32 H 1.09000 * 110.75409 * 158.62725 * 5 4 2 33 33 H 1.09004 * 110.90600 * 204.77962 * 6 5 4 34 34 H 1.08992 * 110.93602 * 81.19166 * 6 5 4 35 35 H 1.09000 * 109.46686 * 61.21736 * 9 7 2 36 36 H 1.09007 * 109.46919 * 301.22234 * 9 7 2 37 37 H 1.00894 * 110.99679 * 56.04910 * 10 9 7 38 38 H 1.09004 * 109.47027 * 60.00361 * 11 10 9 39 39 H 1.09002 * 109.47026 * 300.00576 * 11 10 9 40 40 H 1.09001 * 109.47671 * 65.00115 * 16 12 11 41 41 H 1.09006 * 109.47297 * 304.99834 * 16 12 11 42 42 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 3.2379 -1.3643 -0.7646 6 6 2.9194 -1.8915 0.6577 7 6 2.0540 -0.7482 1.2411 8 1 2.6615 -0.0873 1.8593 9 6 0.8898 -1.3190 2.0535 10 7 1.4121 -2.0014 3.2449 11 6 0.3200 -2.5628 4.0512 12 6 0.9019 -3.2633 5.2806 13 1 1.5342 -2.5663 5.8307 14 6 1.7042 -4.4205 4.8522 15 7 2.3238 -5.3142 4.5200 16 6 -0.2379 -3.7392 6.1835 17 6 0.3342 -4.3191 7.4514 18 1 1.4038 -4.3459 7.5983 19 6 -0.5079 -4.8154 8.4238 20 7 -1.8104 -4.7833 8.2447 21 14 0.2014 -5.5348 9.9950 22 1 0.4397 -6.9889 9.8103 23 1 1.4849 -4.8593 10.3134 24 1 -0.7568 -5.3281 11.1106 25 1 -0.3633 0.4970 0.8995 26 1 -0.3633 0.5306 -0.8801 27 1 -0.3634 -1.0274 -0.0194 28 1 3.1429 1.4279 -0.0194 29 1 1.6787 1.9606 -0.8801 30 1 1.7104 1.9491 0.8995 31 1 4.0685 -0.6590 -0.7355 32 1 3.4612 -2.1908 -1.4393 33 1 3.8331 -2.0225 1.2376 34 1 2.3541 -2.8222 0.6105 35 1 0.3341 -2.0299 1.4419 36 1 0.2284 -0.5083 2.3596 37 1 1.9850 -1.3797 3.7956 38 1 -0.2400 -3.2823 3.4537 39 1 -0.3449 -1.7605 4.3711 40 1 -0.8182 -4.5022 5.6646 41 1 -0.8836 -2.8959 6.4287 42 1 -2.1786 -4.4100 7.4286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596048283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:42 Heat of formation + Delta-G solvation = -44.347768 kcal Electronic energy + Delta-G solvation = -20216.516107 eV Core-core repulsion = 17195.608025 eV Total energy + Delta-G solvation = -3020.908081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36426 -37.44864 -35.53196 -34.03121 -33.31336 -32.27784 -30.91564 -28.25776 -26.98957 -25.61378 -23.71359 -22.55265 -22.07072 -21.52399 -19.60646 -17.34103 -16.74995 -16.55871 -16.05322 -15.28179 -15.10761 -14.59516 -14.50751 -13.82018 -13.72070 -13.49557 -13.34036 -13.13958 -12.50184 -12.39257 -12.27582 -12.19282 -12.04776 -11.87525 -11.77956 -11.41383 -11.34729 -11.17328 -10.90026 -10.81797 -10.75381 -10.61091 -10.36945 -10.16790 -9.93387 -9.80603 -8.68621 -8.43535 -8.37318 -6.45176 -4.16440 3.42477 3.44371 3.59984 3.62242 3.65086 3.73856 3.99463 4.42314 4.48413 4.50664 4.69587 4.80886 4.83517 4.92977 5.03638 5.19582 5.27145 5.30563 5.33503 5.34884 5.42557 5.51772 5.54401 5.60539 5.61890 5.70414 5.74934 5.88726 5.89767 5.95649 6.03602 6.12189 6.24632 6.31605 6.78865 6.98255 7.06861 7.21760 7.38853 8.01337 8.33625 8.51213 8.77494 9.54843 10.95684 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037187 B = 0.003414 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.778376 B = 8199.154438 C = 8591.229952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.102 3.898 3 C -0.162 4.162 4 O -0.370 6.370 5 C 0.042 3.958 6 C -0.136 4.136 7 C -0.111 4.111 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.693 5.693 11 C 0.066 3.934 12 C 0.017 3.983 13 H 0.100 0.900 14 C 0.254 3.746 15 N -0.475 5.475 16 C 0.018 3.982 17 C -0.606 4.606 18 H 0.051 0.949 19 C 0.020 3.980 20 N -0.909 5.909 21 Si 1.069 2.931 22 H -0.288 1.288 23 H -0.287 1.287 24 H -0.283 1.283 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.340 0.660 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.017 0.983 41 H 0.028 0.972 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 13.574 -15.482 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.062 3.938 3 C -0.219 4.219 4 O -0.289 6.289 5 C -0.034 4.034 6 C -0.174 4.174 7 C -0.130 4.130 8 H 0.101 0.899 9 C -0.062 4.062 10 N -0.324 5.324 11 C -0.064 4.064 12 C -0.005 4.005 13 H 0.118 0.882 14 C -0.063 4.063 15 N -0.152 5.152 16 C -0.021 4.021 17 C -0.644 4.644 18 H 0.069 0.931 19 C -0.184 4.184 20 N -0.545 5.545 21 Si 0.897 3.103 22 H -0.214 1.214 23 H -0.214 1.214 24 H -0.209 1.209 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.158 0.842 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.369 10.936 -15.081 19.687 hybrid contribution 0.004 1.837 -0.688 1.962 sum 6.372 12.773 -15.769 21.270 Atomic orbital electron populations 1.22016 0.93133 1.03060 1.02302 1.22082 0.94857 0.91736 0.85115 1.22241 1.01420 0.95813 1.02436 1.88895 1.39619 1.67241 1.33180 1.23574 0.87563 0.96127 0.96147 1.23053 1.00484 0.98802 0.95036 1.22571 0.97213 0.97041 0.96148 0.89916 1.22140 0.95222 0.96781 0.92025 1.60484 1.22552 1.39971 1.09351 1.22065 0.92467 0.98348 0.93476 1.19029 0.96726 0.89542 0.95169 0.88242 1.28810 0.92495 0.93793 0.91169 1.81028 1.11268 1.11726 1.11183 1.19287 0.92011 0.96747 0.94055 1.21995 0.94849 1.44500 1.03088 0.93051 1.25795 0.94764 0.95233 1.02621 1.70779 1.11801 1.42897 1.29006 0.83539 0.74988 0.76431 0.75358 1.21430 1.21352 1.20880 0.90985 0.92185 0.91423 0.92390 0.91943 0.91570 0.92581 0.89180 0.90214 0.89990 0.90492 0.94573 0.84226 0.90587 0.93387 0.96491 0.95419 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.71 37.16 0.29 -1.01 16 2 C 0.10 0.97 1.19 -90.04 -0.11 0.86 16 3 C -0.16 -1.30 8.62 37.16 0.32 -0.98 16 4 O -0.37 -4.22 10.86 -35.23 -0.38 -4.61 16 5 C 0.04 0.40 7.66 38.21 0.29 0.70 16 6 C -0.14 -1.39 6.52 -24.72 -0.16 -1.55 16 7 C -0.11 -1.05 2.86 -89.09 -0.25 -1.30 16 8 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 9 C 0.07 0.69 3.80 -3.82 -0.01 0.68 16 10 N -0.69 -8.46 6.01 -113.78 -0.68 -9.14 16 11 C 0.07 0.94 5.05 -3.83 -0.02 0.92 16 12 C 0.02 0.31 2.35 -93.41 -0.22 0.09 16 13 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 14 C 0.25 5.30 13.67 -20.73 -0.28 5.02 16 15 N -0.48 -10.80 18.54 42.19 0.78 -10.02 16 16 C 0.02 0.40 3.74 -27.88 -0.10 0.30 16 17 C -0.61 -16.25 8.60 -34.44 -0.30 -16.55 16 18 H 0.05 1.39 7.59 -52.48 -0.40 0.99 16 19 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 20 N -0.91 -26.67 13.65 55.43 0.76 -25.91 16 21 Si 1.07 24.97 29.90 -169.99 -5.08 19.88 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.07 0.55 6.80 -51.93 -0.35 0.20 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.64 6.75 -51.93 -0.35 0.29 16 28 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.98 7.83 -51.93 -0.41 0.57 16 35 H 0.08 0.87 6.85 -51.93 -0.36 0.51 16 36 H 0.04 0.34 6.65 -51.93 -0.35 0.00 16 37 H 0.34 3.73 8.73 -39.29 -0.34 3.39 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 41 H 0.03 0.63 8.01 -51.93 -0.42 0.21 16 42 H 0.27 7.73 7.22 -40.82 -0.29 7.44 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -31.03 341.01 -7.23 -38.25 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.10 Total: -1.25 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.66 Total: -12.35 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.86 Total: -45.07 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.38 Total: -4.61 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.03 -7.23 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596048283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.093 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds